-
1
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
2
-
-
42649091460
-
Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1
-
DOI 10.1038/ng.109, PII NG109
-
Amos CI,Wu XF, Broderick P, Gorlov IP, Gu J, Eisen T, Dong Q, Zhang Q, Gu XJ, Vijayakrishnan J. 2008. Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1. Nat Genet 40: 616-622. (Pubitemid 351601203)
-
(2008)
Nature Genetics
, vol.40
, Issue.5
, pp. 616-622
-
-
Amos, C.I.1
Wu, X.2
Broderick, P.3
Gorlov, I.P.4
Gu, J.5
Eisen, T.6
Dong, Q.7
Zhang, Q.8
Gu, X.9
Vijayakrishnan, J.10
Sullivan, K.11
Matakidou, A.12
Wang, Y.13
Mills, G.14
Doheny, K.15
Tsai, Y.-Y.16
Chen, W.V.17
Shete, S.18
Spitz, M.R.19
Houlston, R.S.20
more..
-
3
-
-
41549089945
-
SNP arrays in heterogeneous tissue: Highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples
-
Assié G, LaFramboise T, Platzer P, Bertherat J, Stratakis C, Eng C. 2008. SNP arrays in heterogeneous tissue: Highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples. Am J Hum Genet 82: 903-915.
-
(2008)
Am J Hum Genet
, vol.82
, pp. 903-915
-
-
Assié, G.1
LaFramboise, T.2
Platzer, P.3
Bertherat, J.4
Stratakis, C.5
Eng, C.6
-
4
-
-
33646911907
-
Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays
-
doi: 10.1371/journal.pcbi.0020041
-
Beroukhim R, Lin M, Park Y, Hao K, Zhao X, Garraway L, Fox E, Hochberg E, Mellinghoff I, Hofer M, et al. 2006. Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays. PLoS Comput Biol 2: e41. doi: 10.1371/journal.pcbi.0020041.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Beroukhim, R.1
Lin, M.2
Park, Y.3
Hao, K.4
Zhao, X.5
Garraway, L.6
Fox, E.7
Hochberg, E.8
Mellinghoff, I.9
Hofer, M.10
-
5
-
-
79551522261
-
Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays
-
doi: 10.1371/journal.pcbi.1001060
-
Chen H, Xing H, Zhang N. 2011. Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays. PLoS Comput Biol 7: e1001060. doi: 10.1371/journal.pcbi.1001060.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Chen, H.1
Xing, H.2
Zhang, N.3
-
6
-
-
0025269067
-
Inference of haplotypes from PCR-amplified samples of diploid populations
-
Clark AG. 1990. Inference of haplotypes from PCR-amplified samples of diploid populations. Mol Biol Evol 7: 111-122.
-
(1990)
Mol Biol Evol
, vol.7
, pp. 111-122
-
-
Clark, A.G.1
-
7
-
-
77949511314
-
Power to detect selective allelic amplification in genome-wide scans of tumor data
-
Dewal N, Freedman M, LaFramboise T, Pe'er I. 2010. Power to detect selective allelic amplification in genome-wide scans of tumor data. Bioinformatics 26: 518-528.
-
(2010)
Bioinformatics
, vol.26
, pp. 518-528
-
-
Dewal, N.1
Freedman, M.2
LaFramboise, T.3
Pe'Er, I.4
-
8
-
-
84863011867
-
Calling amplified haplotypes in next generation tumor sequence data
-
Dewal N, Hu Y, FreedmanM, LaFramboise T, Pe'er I. 2012. Calling amplified haplotypes in next generation tumor sequence data. Genome Res 22: 362-374.
-
(2012)
Genome Res
, vol.22
, pp. 362-374
-
-
Dewal, N.1
Hu, Y.2
Freedman, M.3
LaFramboise, T.4
Pe'Er, I.5
-
9
-
-
0029130796
-
Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
-
Excoffier L, Slatkin M. 1995. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 12: 921-927.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 921-927
-
-
Excoffier, L.1
Slatkin, M.2
-
10
-
-
50849101381
-
Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays
-
doi: 10.1371/journal.pgen.1000167
-
Homer N, Szelinger S, Redman M, Duggan D, TembeW, Muehling J, Pearson JV, Stephan DA, Nelson SF, Craig DW. 2008. Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays. PLoS Genet 4: e1000167. doi: 10.1371/journal.pgen.1000167.
-
(2008)
PLoS Genet
, vol.4
-
-
Homer, N.1
Szelinger, S.2
Redman, M.3
Duggan, D.4
Tembe, W.5
Muehling, J.6
Pearson, J.V.7
Stephan, D.A.8
Nelson, S.F.9
Craig, D.W.10
-
11
-
-
34447577485
-
The International HapMap Project
-
International HapMap Consortium
-
International HapMap Consortium. 2005. The International HapMap Project. Nature 437: 1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
12
-
-
0015043748
-
Mutation and cancer: Statistical study of retinoblastoma
-
Knudson AG. 1971. Mutation and cancer: Statistical study of retinoblastoma. Proc Natl Acad Sci 68: 820-823.
-
(1971)
Proc Natl Acad Sci
, vol.68
, pp. 820-823
-
-
Knudson, A.G.1
-
13
-
-
52949085789
-
Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
-
Korn JM, Kuruvilla FG, McCarroll SA, Wysoker A, Nemesh J, Cawley S, Hubbell E, Veitch J, Collins PJ, Darvishi K, et al. 2008. Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. Nat Genet 40: 1253-1260.
-
(2008)
Nat Genet
, vol.40
, pp. 1253-1260
-
-
Korn, J.M.1
Kuruvilla, F.G.2
McCarroll, S.A.3
Wysoker, A.4
Nemesh, J.5
Cawley, S.6
Hubbell, E.7
Veitch, J.8
Collins, P.J.9
Darvishi, K.10
-
14
-
-
79960268207
-
GPHMM: An integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays
-
Li A, Liu Z, Lezon-Geyda K, Sarkar S, Lannin D, Schulz V, Krop I, Winer E, Harris L, Tuck D. 2011. GPHMM: An integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays. Nucleic Acids Res 39: 4928-4941.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 4928-4941
-
-
Li, A.1
Liu, Z.2
Lezon-Geyda, K.3
Sarkar, S.4
Lannin, D.5
Schulz, V.6
Krop, I.7
Winer, E.8
Harris, L.9
Tuck, D.10
-
15
-
-
0036842635
-
Haplotype inference in random population samples
-
DOI 10.1086/344347
-
Lin S, Cutler D, Zwick M, Chakravarti A. 2002. Haplotype inference in random population samples. Am J Hum Genet 71: 1129-1137. (Pubitemid 35305230)
-
(2002)
American Journal of Human Genetics
, vol.71
, Issue.5
, pp. 1129-1137
-
-
Lin, S.1
Cutler, D.J.2
Zwick, M.E.3
Chakravarti, A.4
-
16
-
-
76249097734
-
Genome alteration print (GAP): A tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays
-
doi: 10.1186/gb-2009-10-11-r128
-
Popova T, Manié E, Stoppa-Lyonnet D, Rigaill G, Barillot E, Stern M. 2009. Genome alteration print (GAP): A tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays. Genome Biol 10: R128. doi: 10.1186/gb-2009-10-11-r128.
-
(2009)
Genome Biol
, vol.10
-
-
Popova, T.1
Manié, E.2
Stoppa-Lyonnet, D.3
Rigaill, G.4
Barillot, E.5
Stern, M.6
-
17
-
-
0024610919
-
A tutorial on HMM and selected applications in speech recognition
-
Rabiner LR. 1989. A tutorial on HMM and selected applications in speech recognition. Proc IEEE 77: 257-286.
-
(1989)
Proc IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.R.1
-
18
-
-
33644974019
-
A fast and flexible statistical model for largescale population genotype data: Applications to inferring missing genotypes and haplotypic phase
-
Scheet P, Stephens M. 2006. A fast and flexible statistical model for largescale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet 78: 629-644.
-
(2006)
Am J Hum Genet
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
19
-
-
53349171050
-
Segmentation-based detection of allelic imbalance and loss-ofheterozygosity in cancer cells using whole genome SNP arrays
-
doi: 10.1186/gb-2008-9-9-r136
-
Staaf J, Lindgren D, Vallon-Christersson J, Isaksson A, Goransson H, Juliusson G, Rosenquist R, Höglund M, Borg Å, Ringnér M. 2008a. Segmentation-based detection of allelic imbalance and loss-ofheterozygosity in cancer cells using whole genome SNP arrays. Genome Biol 9: R136. doi: 10.1186/gb-2008-9-9-r136.
-
(2008)
Genome Biol
, vol.9
-
-
Staaf, J.1
Lindgren, D.2
Vallon-Christersson, J.3
Isaksson, A.4
Goransson, H.5
Juliusson, G.6
Rosenquist, R.7
Höglund, M.8
Borg, Å.9
Ringnér, M.10
-
20
-
-
54949156063
-
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
-
doi: 10.1186/1471-2105-9-409
-
Staaf J, Vallon-Christersson J, Lindgren D, Juliusson G, Rosenquist R, Höglund M, Borg Å, Ringnér M. 2008b. Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. BMC Bioinformatics 9: 409. doi: 10.1186/1471-2105-9-409.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 409
-
-
Staaf, J.1
Vallon-Christersson, J.2
Lindgren, D.3
Juliusson, G.4
Rosenquist, R.5
Höglund, M.6
Borg, Å.7
Ringnér, M.8
-
21
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
DOI 10.1086/319501
-
Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68: 978-989. (Pubitemid 32289743)
-
(2001)
American Journal of Human Genetics
, vol.68
, Issue.4
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
22
-
-
70449418416
-
Integrated study of copy number states and genotype calls using high-density SNP arrays
-
Sun W, Wright F, Tang Z, Nordgard S, Van Loo P, Yu T, Kristensen V, Perou C. 2009. Integrated study of copy number states and genotype calls using high-density SNP arrays. Nucleic Acids Res 37: 5365-5377.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5365-5377
-
-
Sun, W.1
Wright, F.2
Tang, Z.3
Nordgard, S.4
Van Loo, P.5
Yu, T.6
Kristensen, V.7
Perou, C.8
-
23
-
-
0024268520
-
A cladistic analysis of phenotype associations with haplotypes inferred from restriction endonuclease mapping. II. The analysis of natural populations
-
Templeton AR, Sing CF, Kessling A, Humphries S. 1988. A cladistic analysis of phenotype associations with haplotypes inferred from restriction endonuclease mapping. II. The analysis of natural populations. Genetics 120: 1145-1154. (Pubitemid 19008851)
-
(1988)
Genetics
, vol.120
, Issue.4
, pp. 1145-1154
-
-
Templeton, A.R.1
Sing, C.F.2
Kessling, A.3
Humphries, S.4
-
24
-
-
35948984173
-
PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
-
DOI 10.1101/gr.6861907
-
Wang K, Li M, Hadley D, Liu R, Glessner J, Grant S, Hakonarson H, Bucan M. 2007. PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res 17: 1665-1674. (Pubitemid 350074862)
-
(2007)
Genome Research
, vol.17
, Issue.11
, pp. 1665-1674
-
-
Wang, K.1
Li, M.2
Hadley, D.3
Liu, R.4
Glessner, J.5
Grant, S.F.A.6
Hakonarson, H.7
Bucan, M.8
-
25
-
-
77956690576
-
A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data
-
doi: 10.1186/gb-2010-11-9-r92
-
Yau C, Mouradov D, Jorissen R, Colella S, Mirza G, Steers G, Harris A, Ragoussis J, Sieber O, Holmes C, et al. 2010. A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data. Genome Biol 11: R92. doi: 10.1186/gb-2010-11-9-r92.
-
(2010)
Genome Biol
, vol.11
-
-
Yau, C.1
Mouradov, D.2
Jorissen, R.3
Colella, S.4
Mirza, G.5
Steers, G.6
Harris, A.7
Ragoussis, J.8
Sieber, O.9
Holmes, C.10
|