Mapping quantitative trait loci for lint yield and fiber quality across environments in a Gossypium hirsutum × Gossypium barbadense backcross inbred line population

Theoretical and Applied Genetics

Volumn 126, Issue 1, 2013, Pages 275-287

  Yu, Jiwen ^a   Zhang, Ke ^a   Li, Shuaiyang ^a   Yu, Shuxun ^a   Zhai, Honghong ^a   Wu, Man ^a   Li, Xingli ^a   Fan, Shuli ^a   Song, Meizhen ^a   Yang, Daigang ^a   Li, Yunhai ^a   Zhang, Jinfa ^b  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b NEW MEXICO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BOLL WEIGHTS; COTTON PRODUCTION; COTTON YIELD; EGYPTIANS; FIBER QUALITY; FIBER STRENGTH; GENETIC DISTANCES; GENETIC LINKAGE; GENETIC MAP; GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM; INBRED LINE; INTERSPECIFIC HYBRIDS; LINT YIELD; MAPPING POPULATIONS; MARKER-ASSISTED SELECTION; PHENOTYPIC VARIATIONS; QUANTITATIVE TRAIT LOCUS; SELF POLLINATION;

FIBERS; PLANTS (BOTANY);

COTTON;

ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; COTTON; CROSS BREEDING; DNA SEQUENCE; ENVIRONMENT; GENETIC LINKAGE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GOSSYPIUM; METHODOLOGY; PHENOTYPE; PLANT GENOME; POLLEN; QUANTITATIVE TRAIT LOCUS; SPECIES DIFFERENCE; TIME;

CHROMOSOME MAPPING; COTTON FIBER; CROSSES, GENETIC; ENVIRONMENT; GENETIC LINKAGE; GENETIC MARKERS; GENETIC VARIATION; GENOME, PLANT; GOSSYPIUM; MODELS, GENETIC; PHENOTYPE; POLLEN; QUANTITATIVE TRAIT LOCI; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TIME FACTORS;

BIOLOGICAL POPULATIONS; COTTON; CULTIVATION; EGYPT; GENETICS; MAPPING; PLANTS; QUALITY; QUANTITATIVE ANALYSIS;

GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM;

EID: 84871909983     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-1980-x     Document Type: Article

References (48)

1. Asins MJ (2002) Present and future of quantitative trait locus analysis in plant breeding. Plant Breed 121: 281-291.
2. Chee PW, Draye X, Jiang CX, Decanini L, Delmonte TA, Bredhauer R, Smith CW, Paterson AH (2005a) Molecular dissection of interspecific variation between Gossypium hirsutum and Gossypium barbadense (cotton) by a backcross-self approach: I. Fiber elongation. Theor Appl Genet 111: 757-763.
3. Chee PW, Draye X, Jiang CX, Decanini L, Delmonte TA, Bredhauer R, Smith CW, Paterson AH (2005b) Molecular dissection of phenotypic variation between Gossypium hirsutum and Gossypium barbadense (cotton) by a backcross-self approach: III. Fiber length. Theor Appl Genet 111: 772-781.
4. Chen ZJ, Scheffler BE, Dennis E, Triplett BA, Zhang TZ, Guo WZ, Chen XY, Stelly DM, Rabinowicz PD, Town CD, Arioli T, Brubaker C, Cantrell RG, Lacape JM, Ulloa M, Chee P, Gingle AR, Haigler CH, Percy R, Saha S, Wilkins T, Wright RJ, Deynze AV, Zhu YX, Yu SX, Abdurakhmonov I, Katageri I, Kumar PA, Rahman M, Zafar Y, Yu JZ, Kohel RJ, Wendel JF, Paterson AH (2007) Toward sequencing cotton (Gossypium) genomes. Plant Physiol 145: 1303-1310.
5. Chen H, Qian N, Guo W, Song Q, Li B, Deng F, Dong C, Zhang T (2009) Using three overlapped RILs to dissect genetically clustered QTL for fiber strength on Chro. D8 in Upland cotton. Theor Appl Genet 119: 605-612.
6. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
7. Draye X, Chee PW, Jiang CX, Decanini L, Delmonte TA, Bredhauer R, Smith CW, Paterson AH (2005) Molecular dissection of interspecific variation between Gossypium hirsutum and G. barbadense (cotton) by a backcross-self approach: II. Fiber fineness. Theor Appl Genet 111: 764-771.
8. Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B, Zhang T (2007) A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics 176: 527-541.
9. Han ZG, Guo WZ, Song XL, Zhang TZ (2004) Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton. Mol Genet Genomics 272: 308-327.
10. Han ZG, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang TZ (2006) Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theor Appl Genet 112: 430-439.
11. He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart JM (2005) Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica 144: 141-149.
12. He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W (2007) QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum × Gossypium barbadense. Euphytica 153: 181-197.
13. Jiang CX, Wright RJ, El-Zik KM, Paterson AH (1998) Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proc Natl Acad Sci USA 95: 4419-4424.
14. Jiang C, Chee PW, Draye X, Morrell PL, Smith CW, Paterson AH (2000) Multilocus interactions restrict gene introgression in interspecific populations of polyploidy Gossypium (cotton). Evolution 54: 798-814.
15. Kohel RJ, Yu J, Park Y, Lazo R (2001) Molecular mapping and characterization of traits controlling fiber quality in cotton. Euphytica 121: 163-172.
16. Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B (2003) A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutum × Gossypium barbadense backcross population. Genome 46: 612-626.
17. Lacape JM, Nguyen TB, Courtois B, Belot JL, Giband M, Gourlot JP, Gawryziak G, Roques S, Hau B (2005) QTL analysis of cotton fiber quality using multiple Gossypium hirsutum × Gossypium barbadense backcross generations. Crop Sci 45: 123-140.
18. Lacape JM, Jacobs J, Arioli T, Derijcker R, Forestier-Chiron N, Llewellyn D, Jean J, Thomas E, Viot C (2009) A new interspecific, Gossypium hirsutum × G. barbadense, RIL population: towards a unified consensus linkage map of tetraploid cotton. Theor Appl Genet 119: 281-292.
19. Lacape JM, Llewellyn D, Jacobs J, Arioli T, Becker D, Calhoun S, Al-Ghazi Y, Liu S, Palaï O, Georges S, Giband M, de Assunção H, Barroso PA, Claverie M, Gawryziak G, Jean J, Vialle M, Viot C (2010) Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum × G. barbadense RIL population. BMC Plant Biol 10: 132.
20. Li H, Ye G, Wang J (2007) A modified algorithm for the improvement of composite interval mapping. Genetics 175: 361-374.
21. Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart JM (2005) Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant Breed 124: 180-187.
22. Lin Z, Zhang Y, Zhang X, Guo X (2009) A high-density integrative linkage map for Gossypium. Euphytica 166: 35-45.
23. Matsubara K, Kono I, Hori K, Nonoue Y, Ono N, Shomura A, Mizubayashi T, Yamamoto S, Yamanouchi U, Shirasawa K, Nishio T, Yano M (2008) Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivars. Theor Appl Genet 117: 935-945.
24. McCouch SR, Cho YG, Yano PE, Blinstrub M, Morishima H, Kinoshita T (1997) Report on QTL nomenclature. Rice Genet Newslett 14: 11-13.
25. Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM (2004) Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor Appl Genet 109: 167-175.
26. Park YH, Alabady MS, Ulloa M, Sickler B, Wilkins TA, Yu J, Stelly DM, Kohel RJ, El-Shihy OM, Cantrell RG (2005) Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line cotton population. Mol Genet Genomics 274: 428-441.
27. Paterson AH, Saranga Y, Menz M, Jiang C, Wright RJ (2003) QTL analysis of genotype × environment interactions affecting cotton fiber quality. Theor Appl Genet 106: 384-396.
28. Reinisch AJ, Dong JM, Brubaker CL, Stelly DM, Wendel JM, Paterson AH (1994) A detailed RFLP map of cotton, Gossypium hirsutum × Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics 138: 829-847.
29. Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH (2004) A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics 161: 389-417.
30. Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH (2007) Meta-analysis of polyploid cotton QTLs shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics 176: 2577-2588.
31. Shappley ZW, Jenkins JN, Zhu J, McCarty JC (1998) Quantitative trait loci associated with agronomic and fiber traits of upland cotton. J Cotton Sci 2: 153-163.
32. Shen XL, Guo WZ, Zhu XF, Yuan YL, Yu JZ, Kohel RJ, Zhang TZ (2005) Molecular mapping of QTLs for fiber qualities in three diverse lines in upland cotton using SSR markers. Mol Breed 15: 169-181.
33. Shen XL, Guo WZ, Lu QX, Zhu XF, Yuan YL, Zhang TZ (2007) Genetic mapping of quantitative trait loci for fiber quality and yield trait by RIL approach in upland cotton. Euphytica 155: 371-380.
34. Song X, Wang K, Guo W, Zhang J, Zhang T (2005) A comparison of genetic maps constructed from haploid and BC1 mapping populations from the same crossing between Gossypium hirsutum L. and Gossypium barbadense L. Genome 48: 378-390.
35. Stam P (1993) Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. Plant J 3: 739-744.
36. Ulloa M, Meredith WR (2000) Genetic linkage map and QTL analysis of agronomic and fiber quality traits in an intraspecific population. J Cotton Sci 4: 161-170.
37. Wehrhahn C, Allard RW (1965) The detection and measurement of the effects of individual genes involved in the inheritance of a quantitative character in wheat. Genetics 51: 109-119.
38. Wu J, Gutierrez OA, Jenkins JN, McCarty JC, Zhu J (2009) Quantitative analysis and QTL mapping for agronomic and fiber traits in an RI population of Upland cotton. Euphytica 165: 231-245.
39. Xu YB, Zhu LH, Huang N, McCouch SR (1997) Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Genet Genomics 253: 535-545.
40. Yu JW, Yu SX, Liu C, Wu W, Fan SL, Song MZ, Lin ZX, Zhang XL, Zhang JF (2007) High-density linkage map of cultivated allotetraploid cotton based on SSR, TRAP, SRAP and AFLP markers. J Integr Plant Biol 49: 716-724.
41. Yu J, Kohel RJ, Smith CW (2010) The construction of a tetraploid cotton genome wide comprehensive reference map. Genomics 95: 230-240.
42. Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X (2011) Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between Gossypium hirsutum and G. barbadense. BMC Genomics 12: 15.
43. Zhang JF, Percy RG (2007) Improving Upland cotton by introducing desirable genes from Pima cotton. World Cotton Res Conf. http://wcrc. confex. com/wcrc/2007/techprogram/P1901. HTM.
44. Zhang JF, Stewart JM (2000) Economical and rapid method for extracting cotton genomic DNA. J Cotton Sci 4: 193-201.
45. Zhang J, Wu YT, Guo WZ, Zhang TZ (2000) Fast screening of SSR markers in cotton with PAGE/silver staining. Cotton Sci Sinica 12: 267-269.
46. Zhang J, Guo W, Zhang T (2002) Molecular linkage map of allotetraploid cotton (Gossypium hirsutum L. × Gossypium barbadense L.) with a haploid population. Theor Appl Genet 105: 1166-1174.
47. Zhang Y, Lin Z, Xia Q, Zhang M, Zhang X (2008) Characteristics and analysis of simple sequence repeats in the cotton genome based on a linkage map constructed from a BC1 population between Gossypium hirsutum and G. barbadense. Genome 51: 534-546.
48. Zhang Z, Hu M, Zhang J, Liu D, Zheng J, Zhang K, Wang W, Wan Q (2009) Construction of a comprehensive PCR-based marker linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.). Mol Breed 24: 49-61.