메뉴 건너뛰기




Volumn 51, Issue 7, 2008, Pages 534-546

Characteristics and analysis of simple sequence repeats in the cotton genome based on a linkage map constructed from a BC1 population between Gossypium hirsutum and G. barbadense

Author keywords

Cotton; EST SSRs; Genetic linkage map; Genomic SSRs; Motifs

Indexed keywords

MICROSATELLITE DNA;

EID: 47249130754     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G08-033     Document Type: Article
Times cited : (41)

References (33)
  • 1
    • 34249100070 scopus 로고    scopus 로고
    • Microsatellite markers associated with lint percentage trait in cotton, Gossypium hirsutum
    • doi:10.1007/s10681-007-9361-2
    • Abdurakhmonov, I.Y., Buriev, Z.T., Saha, S., Pepper, A.E., Musaev, J.A., Almatov, A., et al. 2007. Microsatellite markers associated with lint percentage trait in cotton, Gossypium hirsutum. Euphytica, 156: 141-156. doi:10.1007/s10681-007-9361-2.
    • (2007) Euphytica , vol.156 , pp. 141-156
    • Abdurakhmonov, I.Y.1    Buriev, Z.T.2    Saha, S.3    Pepper, A.E.4    Musaev, J.A.5    Almatov, A.6
  • 2
    • 4143061372 scopus 로고    scopus 로고
    • EST derived PCR-based markers for functional gene homologues in cotton
    • PMID:15190362, doi:10.1139/g04-002
    • Chee, P.W., Rong, J., Williams, C.D., Schulze, S.R., and Paterson, A.H. 2004. EST derived PCR-based markers for functional gene homologues in cotton. Genome, 47: 449-462. doi:10.1139/g04-002. PMID:15190362.
    • (2004) Genome , vol.47 , pp. 449-462
    • Chee, P.W.1    Rong, J.2    Williams, C.D.3    Schulze, S.R.4    Paterson, A.H.5
  • 3
    • 0542446119 scopus 로고    scopus 로고
    • A high throughput procedure for capturing microsatellites from complex plant genomes. Plant Mol. Biol
    • Report
    • Connell, J.P., Pammi, S., Iqbal, M.J., Huizinga, T., and Reddy, A.S. 1998. A high throughput procedure for capturing microsatellites from complex plant genomes. Plant Mol. Biol. Report. 16: 341-349.
    • (1998) , vol.16 , pp. 341-349
    • Connell, J.P.1    Pammi, S.2    Iqbal, M.J.3    Huizinga, T.4    Reddy, A.S.5
  • 4
    • 33646568810 scopus 로고    scopus 로고
    • Cotton genome mapping with new microsatellites from Acala 'Maxxa' BACends
    • PMID:16501995, doi:10.1007/s00438-006-0106-z
    • Frelichowski, J.E., Jr., Palmer, M.B., Main, D., Tomkins, J.P., Cantrell, R.G., Stelly, D.M., et al. 2006. Cotton genome mapping with new microsatellites from Acala 'Maxxa' BACends. Mol. Genet. Genomics, 275: 479-491. doi:10.1007/s00438-006-0106-z. PMID:16501995.
    • (2006) Mol. Genet. Genomics , vol.275 , pp. 479-491
    • Frelichowski Jr., J.E.1    Palmer, M.B.2    Main, D.3    Tomkins, J.P.4    Cantrell, R.G.5    Stelly, D.M.6
  • 5
    • 0000113842 scopus 로고
    • A revised taxonomic interpretation of Gossypium L. (Malvaceae)
    • Fryxell, P.A. 1992. A revised taxonomic interpretation of Gossypium L. (Malvaceae). Rheedea, 2: 108-165.
    • (1992) Rheedea , vol.2 , pp. 108-165
    • Fryxell, P.A.1
  • 6
    • 34249835145 scopus 로고
    • RFLP maps of potato and their alignment with the homoeologous tomato genome
    • doi:10.1007/BF00229225
    • Gebhardt, C., Ritter, E., Barone, A., Debener, T., Walkemeier, B., Schachtschabel, U., et al. 1991. RFLP maps of potato and their alignment with the homoeologous tomato genome. Theor. Appl. Genet., 83: 49-57. doi:10.1007/BF00229225.
    • (1991) Theor. Appl. Genet , vol.83 , pp. 49-57
    • Gebhardt, C.1    Ritter, E.2    Barone, A.3    Debener, T.4    Walkemeier, B.5    Schachtschabel, U.6
  • 7
    • 34447283003 scopus 로고    scopus 로고
    • A microsatellite-based, gene-rich linkage map reveals genome structure, function, and evolution in Gossypium
    • PMID: 17409069, doi:10.1534/genetics.107.070375
    • Guo, W., Cai, C., Wang, C., Han, Z., Song, X., Wang, K., et al. 2007. A microsatellite-based, gene-rich linkage map reveals genome structure, function, and evolution in Gossypium. Genetics, 176: 527-541. doi:10.1534/genetics.107.070375. PMID: 17409069.
    • (2007) Genetics , vol.176 , pp. 527-541
    • Guo, W.1    Cai, C.2    Wang, C.3    Han, Z.4    Song, X.5    Wang, K.6
  • 8
    • 8644248861 scopus 로고    scopus 로고
    • Genetic mapping of EST derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton
    • PMID: 15368122, doi:10.1007/s00438-004-1059-8
    • Han, Z.G., Guo, W.Z., Song, X., and Zhang, T.Z. 2004. Genetic mapping of EST derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton. Mol. Genet. Genomics, 272: 308-327. doi:10.1007/s00438-004-1059-8. PMID: 15368122.
    • (2004) Mol. Genet. Genomics , vol.272 , pp. 308-327
    • Han, Z.G.1    Guo, W.Z.2    Song, X.3    Zhang, T.Z.4
  • 9
    • 30544440501 scopus 로고    scopus 로고
    • Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton
    • PMID:16341684, doi:10.1007/s00122-005-0142-9
    • Han, Z.G., Wang, C.B., Song, X.L., Guo, W.Z., Guo, J.Y., and Zhang, T.Z. 2006. Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theor. Appl. Genet. 112: 430-439. doi:10.1007/s00122-005-0142-9. PMID:16341684.
    • (2006) Theor. Appl. Genet , vol.112 , pp. 430-439
    • Han, Z.G.1    Wang, C.B.2    Song, X.L.3    Guo, W.Z.4    Guo, J.Y.5    Zhang, T.Z.6
  • 10
    • 25444512094 scopus 로고    scopus 로고
    • Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton
    • doi:10.1007/s10681-005-5297-6
    • He, D.H., Lin, Z.X., Zhang, X.L., Nie, Y.C., Guo, X.P., Feng, C.D., and Stewart, J.M. 2005. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica, 144: 141-149. doi:10.1007/s10681-005-5297-6.
    • (2005) Euphytica , vol.144 , pp. 141-149
    • He, D.H.1    Lin, Z.X.2    Zhang, X.L.3    Nie, Y.C.4    Guo, X.P.5    Feng, C.D.6    Stewart, J.M.7
  • 11
    • 33845982521 scopus 로고    scopus 로고
    • QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense
    • He, D.H., Lin, Z.X., Zhang, X.L., Nie, Y.C., Guo, X.P., Zhang, Y.X., and Li, W. 2007. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica, 153: 181-197.
    • (2007) Euphytica , vol.153 , pp. 181-197
    • He, D.H.1    Lin, Z.X.2    Zhang, X.L.3    Nie, Y.C.4    Guo, X.P.5    Zhang, Y.X.6    Li, W.7
  • 12
    • 20444491651 scopus 로고    scopus 로고
    • Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs
    • PMID:15761705, doi:10.1007/s10142- 005-0139-0
    • Jung, S., Abbott, A., Jesudurai, C., Tomkins, J., and Main, D. 2005. Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs. Funct. Integr. Genomics, 5: 136-143. doi:10.1007/s10142- 005-0139-0. PMID:15761705.
    • (2005) Funct. Integr. Genomics , vol.5 , pp. 136-143
    • Jung, S.1    Abbott, A.2    Jesudurai, C.3    Tomkins, J.4    Main, D.5
  • 13
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi, D.D. 1944. The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
    • (1944) Ann. Eugen , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 14
    • 0023426747 scopus 로고
    • MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations
    • PMID:3692487, doi:10.1016/0888-7543(87)90010-3
    • Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., and Newburg, I. 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1: 174-181. doi:10.1016/0888-7543(87)90010-3. PMID:3692487.
    • (1987) Genomics , vol.1 , pp. 174-181
    • Lander, E.S.1    Green, P.2    Abrahamson, J.3    Barlow, A.4    Daly, M.J.5    Lincoln, S.E.6    Newburg, I.7
  • 15
    • 17644371365 scopus 로고    scopus 로고
    • Linkage map construction and mapping QTLs for cotton fiber quality using SRAP, SSR and RAPD
    • doi:10.1111/j.1439-0523.2004.01039.x
    • Lin, Z.X., He, D.H., Zhang, X.L., Nie, Y.C., Guo, X.P., Feng, C.D., and Stewart, J.M. 2005. Linkage map construction and mapping QTLs for cotton fiber quality using SRAP, SSR and RAPD. Plant Breed. 124: 180-187. doi:10.1111/j.1439-0523.2004.01039.x.
    • (2005) Plant Breed , vol.124 , pp. 180-187
    • Lin, Z.X.1    He, D.H.2    Zhang, X.L.3    Nie, Y.C.4    Guo, X.P.5    Feng, C.D.6    Stewart, J.M.7
  • 16
    • 0026563916 scopus 로고
    • Systematic detection of errors in genetic linkage data
    • PMID:1427888, doi:10.1016/S0888-7543(05) 80158-2
    • Lincoln, S.E., and Lander, E.S. 1992. Systematic detection of errors in genetic linkage data. Genomics, 14: 604-610. doi:10.1016/S0888-7543(05) 80158-2. PMID:1427888.
    • (1992) Genomics , vol.14 , pp. 604-610
    • Lincoln, S.E.1    Lander, E.S.2
  • 17
    • 3142700849 scopus 로고    scopus 로고
    • Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers
    • PMID:14997301, doi:10.1007/s00122-004-1612-1
    • Nguyen, T.B., Giband, M., Brottier, P., Risterucci, A.M., and Lacape, J.M. 2004. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor. Appl. Genet. 109: 167-175. doi:10.1007/s00122-004-1612-1. PMID:14997301.
    • (2004) Theor. Appl. Genet , vol.109 , pp. 167-175
    • Nguyen, T.B.1    Giband, M.2    Brottier, P.3    Risterucci, A.M.4    Lacape, J.M.5
  • 18
    • 27844462942 scopus 로고    scopus 로고
    • Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred (RIL) cotton population
    • PMID:16187061, doi:10.1007/s00438-005-0037-0
    • Park, Y.H., Alabady, M.S., Ulloa, M., Sickler, B., Wilkins, T.A., Yu, J., et al. 2005. Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred (RIL) cotton population. Mol. Genet. Genomics, 274: 428-441. doi:10.1007/s00438-005-0037-0. PMID:16187061.
    • (2005) Mol. Genet. Genomics , vol.274 , pp. 428-441
    • Park, Y.H.1    Alabady, M.S.2    Ulloa, M.3    Sickler, B.4    Wilkins, T.A.5    Yu, J.6
  • 19
    • 51649134234 scopus 로고    scopus 로고
    • Paterson, A.H., Brubaker, C.L., and Wendel, J.F. 1993. A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP and PCR analysis. Plant Mol. Biol. Report. 11: 112-127.
    • Paterson, A.H., Brubaker, C.L., and Wendel, J.F. 1993. A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP and PCR analysis. Plant Mol. Biol. Report. 11: 112-127.
  • 21
    • 0011236446 scopus 로고    scopus 로고
    • New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research
    • Reddy, O.U.K., Pepper, A.E., Abdurakhmonov, I., Saha, S., Jenkins, J.N., Brooks, T., et al. 2001. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. J. Cotton Sci. 5: 103-113.
    • (2001) J. Cotton Sci , vol.5 , pp. 103-113
    • Reddy, O.U.K.1    Pepper, A.E.2    Abdurakhmonov, I.3    Saha, S.4    Jenkins, J.N.5    Brooks, T.6
  • 22
    • 0027970718 scopus 로고
    • A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: Chromosome organization and evolution in a disomic polyploid genome
    • PMID:7851778
    • Reinisch, A.J., Dong, J.M., Brubaker, C.L., Stelly, D.M., Wendel, J.F., and Paterson, A.H. 1994. A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics, 138: 829-847. PMID:7851778.
    • (1994) Genetics , vol.138 , pp. 829-847
    • Reinisch, A.J.1    Dong, J.M.2    Brubaker, C.L.3    Stelly, D.M.4    Wendel, J.F.5    Paterson, A.H.6
  • 23
    • 12144290265 scopus 로고    scopus 로고
    • A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission of cotton (Gossypium)
    • PMID:15020432, doi:10.1534/genetics.166.1. 389
    • Rong, J., Abbey, C., Bowers, J.E., Brubaker, C.L., Chang, C., Chee, P.W., et al. 2004. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission of cotton (Gossypium). Genetics, 166: 389-417. doi:10.1534/genetics.166.1. 389. PMID:15020432.
    • (2004) Genetics , vol.166 , pp. 389-417
    • Rong, J.1    Abbey, C.2    Bowers, J.E.3    Brubaker, C.L.4    Chang, C.5    Chee, P.W.6
  • 24
    • 0038372720 scopus 로고    scopus 로고
    • Simple sequence repeats as useful resources to study transcribed genes of cotton
    • doi:10.1023/A:1023077209170
    • Saha, S., Karaca, M., Jenkins, J.N., Zipf, A.E., Reddy, O.U., and Kantety, R.V. 2003. Simple sequence repeats as useful resources to study transcribed genes of cotton. Euphytica, 130: 355-364. doi:10.1023/A:1023077209170.
    • (2003) Euphytica , vol.130 , pp. 355-364
    • Saha, S.1    Karaca, M.2    Jenkins, J.N.3    Zipf, A.E.4    Reddy, O.U.5    Kantety, R.V.6
  • 25
    • 0031773134 scopus 로고    scopus 로고
    • An RFLP linkage map of upland cotton (Gossypium hirsutum L.)
    • doi:10.1007/s001220050952
    • Shappley, Z.W., Jenkins, J.N., Meredith, W.R., and McCarty, J.C. 1998a. An RFLP linkage map of upland cotton (Gossypium hirsutum L.). Theor. Appl. Genet. 97: 756-761. doi:10.1007/s001220050952.
    • (1998) Theor. Appl. Genet , vol.97 , pp. 756-761
    • Shappley, Z.W.1    Jenkins, J.N.2    Meredith, W.R.3    McCarty, J.C.4
  • 26
    • 0037657231 scopus 로고    scopus 로고
    • Quantitative trait loci associated with agronomic and fiber traits of upland cotton
    • Shappley, Z.W., Jenkins, J.N., Zhu, J., and McCarty, J.C. 1998b. Quantitative trait loci associated with agronomic and fiber traits of upland cotton. J. Cotton Sci. 2: 153-163.
    • (1998) J. Cotton Sci , vol.2 , pp. 153-163
    • Shappley, Z.W.1    Jenkins, J.N.2    Zhu, J.3    McCarty, J.C.4
  • 27
    • 33745807588 scopus 로고    scopus 로고
    • Analysis of ESTs from multiple Gossypium hirsutum tissues and identification of SSRs
    • PMID:16699550, doi:10.1139/G05-115
    • Taliercio, E., Allen, R.D., Essenberg, M., Klueva, N., Nguyen, H., Patil, M.A., et al. 2006. Analysis of ESTs from multiple Gossypium hirsutum tissues and identification of SSRs. Genome, 49: 306-319. doi:10.1139/G05-115. PMID:16699550.
    • (2006) Genome , vol.49 , pp. 306-319
    • Taliercio, E.1    Allen, R.D.2    Essenberg, M.3    Klueva, N.4    Nguyen, H.5    Patil, M.A.6
  • 28
    • 0346063805 scopus 로고    scopus 로고
    • A consensus linkage map for sugi (Cryptomeria japonica) from two pedigrees based on microsatellites and expressed sequence tags
    • PMID:14668402
    • Tani, N., Takahashi, T., Iwata, H., Mukai, Y., Ujino-Ihara, T., Matsumoto, A., et al. 2003. A consensus linkage map for sugi (Cryptomeria japonica) from two pedigrees based on microsatellites and expressed sequence tags. Genetics, 165: 1551-1568. PMID:14668402.
    • (2003) Genetics , vol.165 , pp. 1551-1568
    • Tani, N.1    Takahashi, T.2    Iwata, H.3    Mukai, Y.4    Ujino-Ihara, T.5    Matsumoto, A.6
  • 30
    • 0031030365 scopus 로고    scopus 로고
    • 2, backcross, doubled-haploid, and recombinant inbred populations in rice (Oryza sativa L.)
    • 2, backcross, doubled-haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol. Genet. Genomics, 53: 535-545.
    • (1997) Mol. Genet. Genomics , vol.53 , pp. 535-545
    • Xu, Y.1    Zhu, L.2    Xiao, J.3    Huang, N.4    McCouch, S.R.5
  • 31
    • 34548568894 scopus 로고    scopus 로고
    • Studies of new EST-SSRs derived from Gossypium barbadense
    • doi:10.1007/s11434-007-0399-2
    • Zhang, Y.X., Lin, Z.X., Li, W., Tu, L.L., Nie, Y.C., and Zhang, X.L. 2007. Studies of new EST-SSRs derived from Gossypium barbadense. Chin. Sci. Bull. 52: 2522-2531. doi:10.1007/s11434-007-0399-2.
    • (2007) Chin. Sci. Bull , vol.52 , pp. 2522-2531
    • Zhang, Y.X.1    Lin, Z.X.2    Li, W.3    Tu, L.L.4    Nie, Y.C.5    Zhang, X.L.6
  • 32
    • 25444442818 scopus 로고    scopus 로고
    • Construction of a genetic linkage map and QTL analysis of fiber-related traits in upland cotton (Gossypium hirsutum L.)
    • doi:10.1007/s10681-005-4629-x
    • Zhang, Z.S., Xiao, Y.H., Luo, M., Li, X.B., Luo, X.Y., Hou, L., et al. 2005. Construction of a genetic linkage map and QTL analysis of fiber-related traits in upland cotton (Gossypium hirsutum L.). Euphytica, 144: 91-99. doi:10.1007/s10681-005-4629-x.
    • (2005) Euphytica , vol.144 , pp. 91-99
    • Zhang, Z.S.1    Xiao, Y.H.2    Luo, M.3    Li, X.B.4    Luo, X.Y.5    Hou, L.6
  • 33
    • 33845970642 scopus 로고
    • Characterization and genetic mapping of DNA microsatellites from cotton
    • San Diego, Calif, January
    • Zhao, X.P., Lin, Y.R., and Paterson, A.H. 1994. Characterization and genetic mapping of DNA microsatellites from cotton. In Plant Genome II Conference, San Diego, Calif., January 1994. pp. 207-213.
    • (1994) Plant Genome II Conference , pp. 207-213
    • Zhao, X.P.1    Lin, Y.R.2    Paterson, A.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.