메뉴 건너뛰기




Volumn 8, Issue 1, 2013, Pages 45-57

In silico characterization of the insect diapause-associated protein couch potato (CPO) in Calanus finmarchicus (Crustacea: Copepoda)

Author keywords

454 pyrosequencing; Expressed sequence tag (EST); Neural development; RNA binding protein; Stage specific expression; Transcriptome

Indexed keywords

COUCH POTATO PROTEIN; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

EID: 84871895484     PISSN: 1744117X     EISSN: 18780407     Source Type: Journal    
DOI: 10.1016/j.cbd.2012.11.002     Document Type: Article
Times cited : (14)

References (54)
  • 1
    • 58149173418 scopus 로고    scopus 로고
    • What makes a fly enter diapause?
    • M.J. Allen What makes a fly enter diapause? Fly (Austin) 1 2007 307 310
    • (2007) Fly (Austin) , vol.1 , pp. 307-310
    • Allen, M.J.1
  • 2
    • 0026437857 scopus 로고
    • The Drosophila couch potato protein is expressed in nuclei of peripheral neuronal precursors and shows homology to RNA-binding proteins
    • H.J. Bellen, S. Kooyer, D. D'Evelyn, and J. Pearlman The Drosophila couch potato protein is expressed in nuclei of peripheral neuronal precursors and shows homology to RNA-binding proteins Genes Dev. 6 1992 2125 2136
    • (1992) Genes Dev. , vol.6 , pp. 2125-2136
    • Bellen, H.J.1    Kooyer, S.2    D'Evelyn, D.3    Pearlman, J.4
  • 3
    • 0026734149 scopus 로고
    • The Drosophila couch potato gene: An essential gene required for normal adult behavior
    • H.J. Bellen, H. Vaessin, E. Bier, A. Kolodkin, D. D'Evelyn, S. Kooyer, and Y.N. Jan The Drosophila couch potato gene: an essential gene required for normal adult behavior Genetics 131 1992 365 375
    • (1992) Genetics , vol.131 , pp. 365-375
    • Bellen, H.J.1    Vaessin, H.2    Bier, E.3    Kolodkin, A.4    D'Evelyn, D.5    Kooyer, S.6    Jan, Y.N.7
  • 4
    • 33847344809 scopus 로고    scopus 로고
    • Histological changes of the digestive epithelium in Calanus finmarchicus: An index for diapause?
    • DOI 10.1007/s00227-006-0481-3
    • D. Bonnet, R.P. Harris, S. Hay, A. Ingvarsdóttir, and O. Simon Histological changes of the digestive epithelium in Calanus finmarchicus: an index of diapause? Mar. Biol. 151 2007 313 326 (Pubitemid 46339642)
    • (2007) Marine Biology , vol.151 , Issue.1 , pp. 313-326
    • Bonnet, D.1    Harris, R.P.2    Hay, S.3    Ingvarsdottir, A.4    Simon, O.5
  • 6
    • 44749091541 scopus 로고    scopus 로고
    • Neuropeptide discovery in Ixodoidea: An in silico investigation using publicly accessible expressed sequence tags
    • A.E. Christie Neuropeptide discovery in Ixodoidea: an in silico investigation using publicly accessible expressed sequence tags Gen. Comp. Endocrinol. 157 2008 174 185
    • (2008) Gen. Comp. Endocrinol. , vol.157 , pp. 174-185
    • Christie, A.E.1
  • 7
    • 53149144259 scopus 로고    scopus 로고
    • In silico analyses of peptide paracrines/hormones in Aphidoidea
    • A.E. Christie In silico analyses of peptide paracrines/hormones in Aphidoidea Gen. Comp. Endocrinol. 159 2008 67 79
    • (2008) Gen. Comp. Endocrinol. , vol.159 , pp. 67-79
    • Christie, A.E.1
  • 9
    • 77952544967 scopus 로고    scopus 로고
    • Bioinformatic analyses of the publicly accessible crustacean expressed sequence tags (ESTs) reveal numerous novel neuropeptide-encoding precursor proteins, including ones from members of several little studied taxa
    • A.E. Christie, C.S. Durkin, N. Hartline, P. Ohno, and P.H. Lenz Bioinformatic analyses of the publicly accessible crustacean expressed sequence tags (ESTs) reveal numerous novel neuropeptide-encoding precursor proteins, including ones from members of several little studied taxa Gen. Comp. Endocrinol. 167 2010 164 178
    • (2010) Gen. Comp. Endocrinol. , vol.167 , pp. 164-178
    • Christie, A.E.1    Durkin, C.S.2    Hartline, N.3    Ohno, P.4    Lenz, P.H.5
  • 12
    • 78650304567 scopus 로고    scopus 로고
    • Identification of chelicerate neuropeptides using bioinformatics of publicly accessible expressed sequence tags
    • A.E. Christie, D.H. Nolan, P. Ohno, N. Hartline, and P.H. Lenz Identification of chelicerate neuropeptides using bioinformatics of publicly accessible expressed sequence tags Gen. Comp. Endocrinol. 170 2011 144 155
    • (2011) Gen. Comp. Endocrinol. , vol.170 , pp. 144-155
    • Christie, A.E.1    Nolan, D.H.2    Ohno, P.3    Hartline, N.4    Lenz, P.H.5
  • 14
    • 0028981716 scopus 로고
    • Dormancy in the Copepoda - An overview
    • H.U. Dahms Dormancy in the Copepoda - an overview Hydrobiologia 306 1995 199 211
    • (1995) Hydrobiologia , vol.306 , pp. 199-211
    • Dahms, H.U.1
  • 15
    • 0036006820 scopus 로고    scopus 로고
    • Regulation of diapause
    • DOI 10.1146/annurev.ento.47.091201.145137
    • D.L. Denlinger Regulation of diapause Annu. Rev. Entomol. 47 2002 93 122 (Pubitemid 34108577)
    • (2002) Annual Review of Entomology , vol.47 , pp. 93-122
    • Denlinger, D.L.1
  • 16
    • 0002415498 scopus 로고
    • Evolutionary aspects of diapause in freshwater copepods
    • W.C. Kerfoot, The University Press of New England Hanover (NH), London
    • K. Elgmork Evolutionary aspects of diapause in freshwater copepods W.C. Kerfoot, Evolution and Ecology of Zooplankton Communities 1980 The University Press of New England Hanover (NH), London 411 417
    • (1980) Evolution and Ecology of Zooplankton Communities , pp. 411-417
    • Elgmork, K.1
  • 17
    • 0034463519 scopus 로고    scopus 로고
    • The adaptive timing of diapause - A search for evolutionarily robust strategies in Calanus finmarchicus
    • DOI 10.1006/jmsc.2000.0976
    • ∅. Fiksen The adaptive timing of diapause - a search for evolutionarily robust strategies in Calanus finmarchicus ICES J. Mar. Sci. 57 2000 1825 1833 (Pubitemid 32205535)
    • (2000) ICES Journal of Marine Science , vol.57 , Issue.6 , pp. 1825-1833
    • Fiksen, O.1
  • 18
    • 59249096056 scopus 로고    scopus 로고
    • Identification of putative peptide paracrines/hormones in the water flea Daphnia pulex (Crustacea; Branchiopoda; Cladocera) using transcriptomics and immunohistochemistry
    • A.L. Gard, P.H. Lenz, J.R. Shaw, and A.E. Christie Identification of putative peptide paracrines/hormones in the water flea Daphnia pulex (Crustacea; Branchiopoda; Cladocera) using transcriptomics and immunohistochemistry Gen. Comp. Endocrinol. 160 2009 271 287
    • (2009) Gen. Comp. Endocrinol. , vol.160 , pp. 271-287
    • Gard, A.L.1    Lenz, P.H.2    Shaw, J.R.3    Christie, A.E.4
  • 19
    • 17444383703 scopus 로고    scopus 로고
    • Drosophila couch potato mutants exhibit complex neurological abnormalities including epilepsy phenotypes
    • DOI 10.1534/genetics.104.028357
    • E. Glasscock, and M.A. Tanouye Drosophila couch potato mutants exhibit complex neurological abnormalities including epilepsy phenotypes Genetics 169 2005 2137 2149 (Pubitemid 40695625)
    • (2005) Genetics , vol.169 , Issue.4 , pp. 2137-2149
    • Glasscock, E.1    Tanouye, M.A.2
  • 20
    • 23044533664 scopus 로고    scopus 로고
    • Seasonal adaptations and the role of lipids in oceanic zooplankton
    • W. Hagen, and H. Auel Seasonal adaptations and the role of lipids in oceanic zooplankton Zoology (Jena). 104 2001 313 326
    • (2001) Zoology (Jena). , vol.104 , pp. 313-326
    • Hagen, W.1    Auel, H.2
  • 22
    • 0000191756 scopus 로고
    • Differentiation of the midgut in adults and over-wintering copepodids of Calanus finmarchicus (Gunnerus) and C. helgolandicus Claus
    • E. Hallberg, and H.J. Hirche Differentiation of the midgut in adults and over-wintering copepodids of Calanus finmarchicus (Gunnerus) and C. helgolandicus Claus J. Exp. Mar. Biol. Ecol. 48 1980 283 295
    • (1980) J. Exp. Mar. Biol. Ecol. , vol.48 , pp. 283-295
    • Hallberg, E.1    Hirche, H.J.2
  • 23
    • 0031833441 scopus 로고    scopus 로고
    • Genes expressed in the ring gland, the major endocrine organ of Drosophila melanogaster
    • P.D. Harvie, M. Filippova, and P.J. Bryant Genes expressed in the ring gland, the major endocrine organ of Drosophila melanogaster Genetics 149 1998 217 231 (Pubitemid 28246799)
    • (1998) Genetics , vol.149 , Issue.1 , pp. 217-231
    • Harvie, P.D.1    Filippova, M.2    Bryant, P.J.3
  • 25
    • 0000988946 scopus 로고    scopus 로고
    • Diapause in the marine copepod Calanus finmarchicus - A review
    • H.J. Hirche Diapause in the marine copepod Calanus finmarchicus - a review Ophelia 44 1996 129 143
    • (1996) Ophelia , vol.44 , pp. 129-143
    • Hirche, H.J.1
  • 26
    • 0343550307 scopus 로고    scopus 로고
    • Seasonal changes in respiration rates of copepodite stage V Calanus finmarchicus (Gunnerus)
    • DOI 10.1046/j.1365-2419.1999.00002.x
    • A. Ingvarsdóttir, D.F. Houlihan, M.R. Heath, and S.J. Hay Seasonal changes in respiration of copepodite stage V Calanus finmarchicus (Gunnerus) Fish. Oceanogr. 8 Suppl. 1 1999 73 83 (Pubitemid 30096256)
    • (1999) Fisheries Oceanography , vol.8 , Issue.SUPPL. 1 , pp. 73-83
    • Ingvarsdottir, A.1    Houlihan, D.F.2    Heath, M.R.3    Hay, S.J.4
  • 28
    • 77949396585 scopus 로고    scopus 로고
    • Changes in gene expression linked with adult reproductive diapause in a northern malt fly species: A candidate gene microarray study
    • M. Kankare, T. Salminen, A. Laiho, L. Vesala, and A. Hoikkala Changes in gene expression linked with adult reproductive diapause in a northern malt fly species: a candidate gene microarray study BMC Ecol. 10 2010 3
    • (2010) BMC Ecol. , vol.10 , pp. 3
    • Kankare, M.1    Salminen, T.2    Laiho, A.3    Vesala, L.4    Hoikkala, A.5
  • 29
    • 84855530592 scopus 로고    scopus 로고
    • Sequence variation in couch potato and its effects on life-history traits in a northern malt fly, Drosophila montana
    • M. Kankare, T.S. Salminen, H. Lampinen, and A. Hoikkala Sequence variation in couch potato and its effects on life-history traits in a northern malt fly, Drosophila montana J. Insect Physiol. 58 2012 256 264
    • (2012) J. Insect Physiol. , vol.58 , pp. 256-264
    • Kankare, M.1    Salminen, T.S.2    Lampinen, H.3    Hoikkala, A.4
  • 30
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • DOI 10.1093/bib/bbn013, Special Issue: Critical Technologies for Bioinformatics
    • K. Katoh, and H. Toh Recent developments in the MAFFT multiple sequence alignment program Brief. Bioinform. 9 2008 286 298 (Pubitemid 351890825)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 31
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • K. Katoh, K. Misawa, K. Kuma, and T. Miyata MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform Nucleic Acids Res. 30 2002 3059 3066 (Pubitemid 34851225)
    • (2002) Nucleic Acids Research , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.-I.3    Miyata, T.4
  • 32
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • B. Langmead, C. Trapnell, M. Pop, and S.L. Salzberg Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol. 10 2009 R25
    • (2009) Genome Biol. , vol.10 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 35
    • 58149194624 scopus 로고    scopus 로고
    • SMART 6: Recent updates and new developments
    • I. Letunic, T. Doerks, and P. Bork SMART 6: recent updates and new developments Nucleic Acids Res. 37 2009 D229 D232
    • (2009) Nucleic Acids Res. , vol.37
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 37
    • 72749113619 scopus 로고    scopus 로고
    • Combining in silico transcriptome mining and biological mass spectrometry for neuropeptide discovery in the Pacific white shrimp Litopenaeus vannamei
    • M. Ma, A.L. Gard, F. Xiang, J. Wang, N. Davoodian, P.H. Lenz, S.R. Malecha, A.E. Christie, and L. Li Combining in silico transcriptome mining and biological mass spectrometry for neuropeptide discovery in the Pacific white shrimp Litopenaeus vannamei Peptides 31 2010 27 43
    • (2010) Peptides , vol.31 , pp. 27-43
    • Ma, M.1    Gard, A.L.2    Xiang, F.3    Wang, J.4    Davoodian, N.5    Lenz, P.H.6    Malecha, S.R.7    Christie, A.E.8    Li, L.9
  • 38
    • 0001632259 scopus 로고
    • Physiological clarification of dormancies in insects
    • A. Mansingh Physiological clarification of dormancies in insects Can. Entomol. 103 1971 983 1009
    • (1971) Can. Entomol. , vol.103 , pp. 983-1009
    • Mansingh, A.1
  • 39
    • 0006636227 scopus 로고
    • On the biology of Calanus finmarchicus VIII. Food uptake, assimilation and excretion in adult and stage v Calanus
    • S.M. Marshall, and A.P. Orr On the biology of Calanus finmarchicus VIII. Food uptake, assimilation and excretion in adult and stage V Calanus J. Mar. Biol. Assoc. U. K. 34 1955 495 529
    • (1955) J. Mar. Biol. Assoc. U. K. , vol.34 , pp. 495-529
    • Marshall, S.M.1    Orr, A.P.2
  • 40
    • 8344250712 scopus 로고    scopus 로고
    • The biology of calanoid copepods
    • J. Mauchline The biology of calanoid copepods Adv. Mar. Biol. 33 1998 1 710
    • (1998) Adv. Mar. Biol. , vol.33 , pp. 1-710
    • Mauchline, J.1
  • 41
    • 79955629714 scopus 로고    scopus 로고
    • Histaminergic signaling in the central nervous system of Daphnia and a role for it in the control of phototactic behavior
    • M.D. McCoole, K.N. Baer, and A.E. Christie Histaminergic signaling in the central nervous system of Daphnia and a role for it in the control of phototactic behavior J. Exp. Biol. 214 2011 1773 1782
    • (2011) J. Exp. Biol. , vol.214 , pp. 1773-1782
    • McCoole, M.D.1    Baer, K.N.2    Christie, A.E.3
  • 43
    • 84859908156 scopus 로고    scopus 로고
    • Genomic analyses of gas (nitric oxide and carbon monoxide) and small molecule transmitter (acetylcholine, glutamate and GABA) signaling systems in Daphnia pulex
    • M.D. McCoole, B.T. D'Andrea, K.N. Baer, and A.E. Christie Genomic analyses of gas (nitric oxide and carbon monoxide) and small molecule transmitter (acetylcholine, glutamate and GABA) signaling systems in Daphnia pulex Comp. Biochem. Physiol. Part D Genomics Proteomics 7 2012 124 160
    • (2012) Comp. Biochem. Physiol. Part D Genomics Proteomics , vol.7 , pp. 124-160
    • McCoole, M.D.1    D'Andrea, B.T.2    Baer, K.N.3    Christie, A.E.4
  • 46
    • 0024670273 scopus 로고
    • Induction of diapause in Drosophila melanogaster: Photoperiodic regulation and the impact of arrhythmic clock mutations on time measurement
    • D.S. Saunders, V.C. Henrich, and L.I. Gilbert Induction of diapause in Drosophila melanogaster: photoperiodic regulation and the impact of arrhythmic clock mutations on time measurement Proc. Natl. Acad. Sci. U. S. A. 86 1989 3748 3752
    • (1989) Proc. Natl. Acad. Sci. U. S. A. , vol.86 , pp. 3748-3752
    • Saunders, D.S.1    Henrich, V.C.2    Gilbert, L.I.3
  • 47
    • 55849084694 scopus 로고    scopus 로고
    • An amino acid polymorphism in the couch potato gene forms the basis for climatic adaptation in Drosophila melanogaster
    • P.S. Schmidt, C.T. Zhu, J. Das, M. Batavia, L. Yang, and W.F. Eanes An amino acid polymorphism in the couch potato gene forms the basis for climatic adaptation in Drosophila melanogaster Proc. Natl. Acad. Sci. U. S. A. 105 2008 16207 16211
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 16207-16211
    • Schmidt, P.S.1    Zhu, C.T.2    Das, J.3    Batavia, M.4    Yang, L.5    Eanes, W.F.6
  • 51
    • 80052815282 scopus 로고    scopus 로고
    • Novel organization and development of copepod myelin. i. ontogeny
    • C.H. Wilson, and D.K. Hartline Novel organization and development of copepod myelin. i. ontogeny J. Comp. Neurol. 519 2011 3259 3280
    • (2011) J. Comp. Neurol. , vol.519 , pp. 3259-3280
    • Wilson, C.H.1    Hartline, D.K.2
  • 52
    • 80052820820 scopus 로고    scopus 로고
    • Novel organization and development of copepod myelin. ii. Nonglial origin
    • C.H. Wilson, and D.K. Hartline Novel organization and development of copepod myelin. ii. Nonglial origin J. Comp. Neurol. 519 2011 3281 3305
    • (2011) J. Comp. Neurol. , vol.519 , pp. 3281-3305
    • Wilson, C.H.1    Hartline, D.K.2
  • 53
    • 33947134266 scopus 로고    scopus 로고
    • Assessment of Calanus finmarchicus growth and dormancy using the aminoacyl-tRNA synthetases method
    • DOI 10.1093/plankt/fbl049
    • L. Yebra, A.G. Hirst, and S. Hernandez-Leon Assessment of Calanus finmarchicus growth and dormancy using the aminoaxyl-tRNA synthetases method J. Plankton Res. 28 2006 1191 1198 (Pubitemid 46405633)
    • (2006) Journal of Plankton Research , vol.28 , Issue.12 , pp. 1191-1198
    • Yebra, L.1    Hirst, A.G.2    Hernandez-Leon, S.3
  • 54
    • 79957507648 scopus 로고    scopus 로고
    • Elevated couch potato transcripts associated with adult diapause in the mosquito Culex pipiens
    • Q. Zhang, and D.L. Denlinger Elevated couch potato transcripts associated with adult diapause in the mosquito Culex pipiens J. Insect Physiol. 57 2011 620 627
    • (2011) J. Insect Physiol. , vol.57 , pp. 620-627
    • Zhang, Q.1    Denlinger, D.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.