Combining in silico transcriptome mining and biological mass spectrometry for neuropeptide discovery in the Pacific white shrimp Litopenaeus vannamei

Peptides

Volumn 31, Issue 1, 2010, Pages 27-43

  Ma, Mingming ^a   Gard, Ashley L ^b   Xiang, Feng ^a   Wang, Junhua ^a   Davoodian, Naveed ^b   Lenz, Petra H ^c   Malecha, Spencer R ^d   Christie, Andrew E ^b,c   Li, Lingjun ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b MOUNT DESERT ISLAND BIOLOGICAL LABORATORY   (United States)

^c UNIVERSITY OF HAWAII   (United States)

^d UNIVERSITY OF HAWAII AT MANOA   (United States)

Author keywords

Electrospray ionization quadrupole time of flight tandem mass spectrometry (ESI Q TOF MS MS); Expressed sequence tag (EST); Functional genomics; Matrix assisted laser desorption ionization Fourier transform mass spectrometry (MALDI FTMS)

Indexed keywords

ALLATOSTATIN; ARGININE; CORAZONIN; ISOPROTEIN; MYOSUPPRESSIN; NEUROPEPTIDE; ORCOKININ; PEPTIDE DERIVATIVE; PROCTOLIN; PYROKININ DERIVATIVE; RYAMIDE; TACHYKININ DERIVATIVE; TRANSCRIPTOME; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; COMPUTER MODEL; COMPUTER PROGRAM; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; EXPRESSED SEQUENCE TAG; GENETIC TRANSCRIPTION; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; ONLINE SYSTEM; PEPTIDE ANALYSIS; PRIORITY JOURNAL; QUADRUPOLE MASS SPECTROMETRY; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; SHRIMP; TANDEM MASS SPECTROMETRY; TRANSCRIPTOMICS;

AMINO ACID SEQUENCE; ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; HUMANS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; NEUROPEPTIDES; PENAEIDAE; SEQUENCE ALIGNMENT; TACHYKININS;

CRUSTACEA; DECAPODA (CRUSTACEA); LITOPENAEUS VANNAMEI;

EID: 72749113619     PISSN: 01969781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.peptides.2009.10.007     Document Type: Article

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