Three new ascomycetes from freshwater in China

Mycologia

Volumn 104, Issue 6, 2012, Pages 1478-1489

  Hu, Dian Ming ^a,b   Cai, Lei ^a   Hyde, Kevin D ^b,c  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b RESEARCH INSTITUTE OF FORESTRY   (China)

^c MAE FAH LUANG UNIVERSITY   (Thailand)

Author keywords

Aquatic fungi; Diaporthaceae; Magnaporthaceae; Systematics; Togniniaceae

Indexed keywords

FRESH WATER; FUNGAL DNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA;

AQUATIC ORGANISM; BIOLOGICAL CHARACTERISTICS; FRESHWATER ENVIRONMENT; FUNGUS; MOLECULAR ANALYSIS; MORPHOLOGY; NEW SPECIES; TAXONOMY;

ARTICLE; ASCOMYCETES; CHEMISTRY; CHINA; CLASSIFICATION; CYTOLOGY; DNA SEQUENCE; FRUITING BODY; FUNGUS HYPHAE; FUNGUS SPORE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENCE; WOOD;

ASCOMYCOTA; BASE SEQUENCE; CHINA; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FRESH WATER; FRUITING BODIES, FUNGAL; HYPHAE; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; SPORES, FUNGAL; WOOD;

CHINA;

ASCOMYCOTA; DIAPORTHE; FUNGI; MAGNAPORTHACEAE; OPHIOCERAS; TOGNINIA; VALSACEAE;

EID: 84871753206     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-430     Document Type: Article

References (52)

1. Cai L, Guo XY, Hyde KD. 2008. Morphological and molecular characterisation of a new anamorphic genus Cheirosporium, from freshwater in China. Persoonia 20: 53-58, doi:10.3767/003158508X314732
2. Cai L, Hyde KD. 2007. New species of Clohiesia and Paraniesslia collected from freshwater habitats in China. Mycoscience 48:182-186, doi:10.1007/s10267-007-0344-x
3. Chomnunti P, Schoch CL, Aguirre-Hudson B, Ko-Ko TW, Hongsanan S, Jones EBG, Kodsueb R, Phookamsak R, Chukeatirote E, Bahkali AH, Hyde KD. 2011. Capnodiaceae. Fungal Divers 51:103-134, doi:10.1007/s13225-011-0145-6
4. Crous PW, Groenewald JZ, Shivas RG, Edwards J, Seifert KA, Alfenas AC, Alfenas RF, Burgess TI, Carnegie AJ, Hardy G. 2011. Fungal planet description sheets: 69-91. Persoonia 26:108-156, doi:10.3767/003158511X581723
5. Damm U, Mostert L, Crous PW, Fourie PH. 2008. Novel Phaeoacremonium species associated with necrotic wood of Prunus trees. Persoonia 20:87-102, doi:10.3767/ 003158508X324227
6. Diogo ELF, Santos JM, Phillips AJL. 2010. Phylogeny, morphology and pathogenicity of Diaporthe and Phomopsis species on almond in Portugal. Fungal Divers 44:107-115, doi:10.1007/s13225-010-0057-x
7. Fallah PM, Shearer CA. 2001. Freshwater ascomycetes: new or noteworthy species from north temperate lakes in Wisconsin. Mycologia 93:566-602, doi:10.2307/ 3761741
8. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
9. Hennings P. 1900. Fungi monsunenses. Monsunia 1:137- 174.
10. Ho WH, Hyde KD, Hodgkiss IJ, Yanna. 2001. Fungal communities on submerged wood from streams in Brunei, Hong Kong and Malaysia. Mycol Res 105:1492- 1501, doi:10.1017/S095375620100507X
11. Hodges CS. 1980. The taxonomy of Diaporthe cubensis. Mycologia 72:542-548, doi:10.2307/3759528
12. Hu DM, Cai L, Chen H, Bahkali AH, Hyde KD. 2010a. Four new freshwater fungi associated with submerged wood from southwest Asia. Sydowia 62:191-203.
13. Hu DM, Cai L, Chen H, Bahkali AH, Hyde KD. 2010b. Fungal diversity on submerged wood in a tropical stream and an artificial lake. Biodivers Conserv 19:3799-3808, doi:10.1007/s10531-010-9927-5
14. Hu DM, Chen H, Cai L, Bahkali AH, Hyde KD. 2012. Aquapeziza: a new genus from freshwater and its morphological and phylogenetic relationships to Pezizaceae. Mycologia 104:540-546, doi:10.3852/11-123
15. Hu DM, Zhu H, Cai L, Hyde KD, Zhang KQ. 2007. Sirothecium triseriale, a new chirosporous anamorphic species from China. Cryptogamie Mycol 28:311-314.
16. Huelsenbeck JP, Ronquist FR. 2001. MrBayes: Bayesian inference of phylogenetic trees. Biometrics 17:754-755, doi:10.1093/bioinformatics/17.8.754
17. Jones EBG, Pinruan U, Sakayaroj J, Hyde KD. 2008. Thailandiomyces bisetulosus gen. et sp. nov. (Diaporthales, Sordariomycetidae, Sordariomycetes) and its anamorph Craspedodidymum is described based on nuclear SSU and LSU rDNA sequences. Fungal Divers 29:89-98.
18. Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008. Dictionary of the Fungi. 10th ed. Trowbridge, UK: Cromwell Press. 771 p.
19. Kishino H, Hasegawa M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of Hominoidea. J Mol Evol 29:170-179, doi:10.1007/ BF02100115
20. Lumbsch HT, Huhndorf SM. 2010. Myconet. Vol. 14. Part 1. Outline of Ascomycota 2009. Life Earth Sci 1:1-42.
21. Mostert L, Groenewald JZ, Summerbell RC, Gams W, Crous PW. 2006. Taxonomy and pathology of Togninia (Diaporthales) and its Phaeoacremonium anamorphs. Stud Mycol 54:1-118, doi:10.3114/sim.54.1.1
22. Müller E, Dennis RWG. 1965. Fungi venezuelani VIII. Plectascales, Sphaeriales, Loculoascomycetes. Kew Bull 19:357-386, doi:10.2307/4108161
23. Nitschke T. 1870. Pyrenomycetes Germanici 2:161-320.
24. Page RDM. 1996. TreeVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358.
25. Pinruan U, Sakayaroj J, Jones EBG, Hyde KD. 2004. Aquatic fungi from peat swamp palms: Phruensis brunneispora gen. et sp. nov. and its hyphomycete anamorph. Mycologia 96:1163-1170, doi:10.2307/3762100
26. Raja HA, Miller AN, Shearer CA. 2010. Freshwater Ascomycetes: Hyalorostratum brunneisporum, a new genus and species in the Diaporthales (Sordariomycetidae, Sordariomycetes) from North America. Mycosphere 1:275-288.
27. Raja HA, Schmit JP, Shearer CA. 2009. Latitudinal, habitat and substrate distribution patterns of freshwater ascomycetes in the Florida Peninsula. Biodivers Conserv 18:419-455, doi:10.1007/s10531-008-9500-7
28. Ranghoo VM, Tsui CKM, Hyde KD. 2001. Brunneosporella aquatica gen. et sp. nov., Aqualignicola hyalina gen. etsp. nov., Jobellisia viridifusca sp. nov. and Porosphaerellopsis bipolaris sp. nov.(ascomycetes) from submerged wood in freshwater habitats. Mycol Res 105:625-633, doi:10.1017/S0953756201003793
29. Rannala B, Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J Mol Evol 43:304-311, doi:10.1007/ BF02338839
30. Réblová M, Mostert L. 2007. Romellia is congeneric with Togninia, and description of Conidiotheca gen. nov. for one species of this genus with polysporous asci. Mycol Res 111:299-307, doi:10.1016/j.mycres.2006.12.002
31. Rehner SA, Samuels GJ. 1995. Molecular systematics of the Hypocreales: a teleomorph gene phylogeny and the status of their anamorphs. Can J Bot 73:816-823, doi:10.1139/b95-327
32. Saccardo PA. 1883. Sylloge Pyrenomycetum. Vol. II. Sylloge Fungorum 2:1-813.
33. Santos JM, Phillips AJL. 2009. Resolving the complex of Diaporthe (Phomopsis) species occurring on Foeniculum vulgare in Portugal. Fungal Divers 34:111-125.
34. Shearer CA, Crane JL, Chen W. 1999. Freshwater ascomycetes: Ophioceras species. Mycologia 91:145-156, doi:10.2307/3761204
35. Shearer CA, Descals E, Kohlmeyer B, Kohlmeyer J, Marvanova L, Padgett D, Porter D, Raja HA, Schmit JP, Thorton HA, et al. 2007. Fungal biodiversity in aquatic habitats. Biodivers Conserv 16:49-67, doi:10.1007/s10531-006-9120-z
36. Shearer CA, Raja HA, Miller AN, Nelson P, Tanaka K, Hirayama K, Marvanova L, Hyde KD, Zhang Y. 2009. The molecular phylogeny of freshwater Dothideomycetes. Stud Mycol 64:145-153, doi:10.3114/sim.2009.64.08
37. Shearer CA, Raja HA. 2010. Freshwater Ascomycetes Database: http://fungi.life.illinois.edu/ (Accessed 14 Mar 2012).
38. Sivanesan A, Shaw DE. 1977. Gnomonia papuana sp. nov. with a Sesquicillium conidial state. Trans Br Mycol Soc 68:85-90, doi:10.1016/S0007-1536(77)80156-3
39. Sommer NF, Beraha L. 1975. Diaporthe actinidiae, a new species causing stem-end rot of Chinese gooseberry fruits. Mycologia 67:650-653, doi:10.2307/3758400
40. Swofford DL. 2002. PAUP 4b10: phylogenetic analysis using parsimony (and other methods). Sunderland, Massachusetts: Sinauer Associates.
41. Teng SJ. 1934. Notes on Sphaeriales from China. Sinensia 4: 359-449.
42. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882, doi:10.1093/nar/25.24.4876
43. Thongkantha S, Jeewon R, Vijaykrishna D, Lumyong S, McKenzie EHC, Hyde KD. 2009. Molecular phylogeny of Magnaporthaceae (Sordariomycetes) with a new species, Ophioceras chiangdaoense from Dracaena loureiroi in Thailand. Fungal Divers 34:157-173.
44. Tsui CKM, Leung YM, Hyde KD, Hodgkiss IJ. 2001. Three new Ophioceras species (Ascomycetes) from the tropics. Mycoscience 42:321-326, doi:10.1007/BF02461213
45. Udayanga D, Liu X, McKenzie EHC, Chukeatirote E, Bahkali AHA, Hyde KD. 2011. The genus Phomopsis: biology, applications, species concepts and names of common phytopathogens. Fungal Divers 50:1-37, doi:10.1007/s13225-011-0126-9
46. Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238- 4246.
47. Walker J. 1980. Gaeumannomyces, Linocarpon, Ophiobolus and several other genera of scolecospored ascomycetes and Phialophora conidial states, with a note on hyphopodia. Mycotaxon 11:1-129.
48. Wehmeyer LE. 1933. The genus Diaporthe Nitschke and its segregates. Univ Michigan Stud, Sci Ser 9:1-349.
49. Wehmeyer LE. 1936. Cultural studies of three new pyrenomycetes. Mycologia 28:35-46, doi:10.2307/3754066
50. White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White YJ, eds. PCR protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315-322.
51. Wong MKM, Hyde KD. 2001. Fungi on grasses: new species of Ascotaiwania, Diaporthe and Oxydothis (Ascomycetes). Cryptogamie Mycol 22:19-28, doi:10.1016/S0181-1584(01)01055-7
52. Zhaxybayeva O, Gogarten JP. 2002. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3:4, doi:10.1186/1471-2164-3-4