Clusteron structure of tick-borne encephalitis virus populations

Infection, Genetics and Evolution

Volumn 14, Issue 1, 2013, Pages 22-28

  Kovalev, Sergey Y ^a   Mukhacheva, Tatyana A ^a  

^a URAL FEDERAL UNIVERSITY   (Russian Federation)

Author keywords

Classification; Clusteron; Evolution; Phylogeography; Population; Tick borne encephalitis virus

Indexed keywords

GLYCOPROTEIN E;

ARTICLE; CLUSTERON; IXODES PERSULCATUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STRAIN IDENTIFICATION; TERRITORIALITY; TICK BORNE ENCEPHALITIS FLAVIVIRUS; VIRUS ATTACHMENT; VIRUS CLASSIFICATION; VIRUS GENE; VIRUS ISOLATION; VIRUS MORPHOLOGY; VIRUS STRAIN; VIRUS TYPING;

AMINO ACID SUBSTITUTION; ANIMALS; ENCEPHALITIS VIRUSES, TICK-BORNE; ENCEPHALITIS, TICK-BORNE; IXODES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PHYLOGEOGRAPHY; RUSSIA; VIRAL ENVELOPE PROTEINS;

FLAVIVIRIDAE; FLAVIVIRUS; IXODES PERSULCATUS; IXODIDA; TICK-BORNE ENCEPHALITIS VIRUS;

EID: 84871750232     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.10.011     Document Type: Article

References (28)

1. Bandelt H.J., Forster P., Rohl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48.
2. Domingo E., Sabo D., Taniguchi T., Weissmann C. Nucleotide sequence heterogeneity of an RNA phage population. Cell 1978, 13:735-744.
3. Ecker M., Allison S.L., Meixner T., Heinz F.X. Sequence analysis and genetic classification of tick-borne encephalitis viruses from Europe and Asia. J. Gen. Virol. 1999, 80(Pt 1):179-185.
4. Golovljova I., Katargina O., Geller J., Tallo T., Mittzenkov V., Vene S., Nemirov K., Kutsenko A., Kilosanidze G., Vasilenko V., Plyusnin A., Lundkvist A. Unique signature amino acid substitution in Baltic tick-borne encephalitis virus (TBEV) strains within the Siberian TBEV subtype. Int. J. Med. Microbiol. 2008, 298:108-120.
5. Gould E.A., de Lamballerie X., Zanotto P.M., Holmes E.C. Evolution, epidemiology, and dispersal of flaviviruses revealed by molecular phylogenies. Adv. Virus Res. 2001, 57:71-103.
6. Gritsun T.S., Frolova T.V., Zhankov A.I., Armesto M., Turner S.L., Frolova M.P., Pogodina V.V., Lashkevich V.A., Gould E.A. Characterization of a siberian virus isolated from a patient with progressive chronic tick-borne encephalitis. J. Virol. 2003, 77:25-36.
7. Gritsun T.S., Lashkevich V.A., Gould E.A. Tick-borne encephalitis. Antiviral Res. 2003, 57:129-146.
8. Hayasaka D., Gritsun T.S., Yoshii K., Ueki T., Goto A., Mizutani T., Kariwa H., Iwasaki T., Gould E.A., Takashima I. Amino acid changes responsible for attenuation of virus neurovirulence in an infectious cDNA clone of the Oshima strain of tick-borne encephalitis virus. J. Gen. Virol. 2004, 85:1007-1018.
9. Hayasaka D., Ivanov L., Leonova G.N., Goto A., Yoshii K., Mizutani T., Kariwa H., Takashima I. Distribution and characterization of tick-borne encephalitis viruses from Siberia and far-eastern Asia. J. Gen. Virol. 2001, 82:1319-1328.
10. Hayasaka D., Suzuki Y., Kariwa H., Ivanov L., Volkov V., Demenev V., Mizutani T., Gojobori T., Takashima I. Phylogenetic and virulence analysis of tick-borne encephalitis viruses from Japan and far-Eastern Russia. J. Gen. Virol. 1999, 80(Pt 12):3127-3135.
11. Heinze D.M., Gould E.A., Forrester N.L. Revisiting the clinal concept of evolution and dispersal for the tick-borne flaviviruses by using phylogenetic and biogeographic analyses. J. Virol. 2012, 86:8663-8671.
12. Karan L.S., Pogodina V.V., Frolova T.V., Platonov A.Y. Genetic diversity of East European and Asian strains of tick-borne encephalitis virus belonging to Siberian genotype. Bull Siberian Med. 2006, Suppl. 1:24-28. (In Russian).
13. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
14. King A.M.Q., Adams M.J., Carstens E.B., Lefkowitz E.J. Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses 2011, Elsevier Academic Press, San Diego, p. 1338.
15. Kovalev S.Y., Chernykh D.N., Kokorev V.S., Snitkovskaya T.E., Romanenko V.V. Origin and distribution of tick-borne encephalitis virus strains of the Siberian subtype in the Middle Urals, the north-west of Russia and the Baltic countries. J. Gen. Virol. 2009, 90:2884-2892.
16. Kovalev S.Y., Kokorev V.S., Belyaeva I.V. Distribution of Far-Eastern tick-borne encephalitis virus subtype strains in the former Soviet Union. J. Gen. Virol. 2010, 91:2941-2946.
17. Kuno G., Chang G.J., Tsuchiya K.R., Karabatsos N., Cropp C.B. Phylogeny of the genus Flavivirus. J. Virol. 1998, 72:73-83.
18. Lambert C., Leonard N., De Bolle X., Depiereux E. ESyPred3D: prediction of proteins 3D structures. Bioinformatics 2002, 18:1250-1256.
19. Mandl C.W., Kroschewski H., Allison S.L., Kofler R., Holzmann H., Meixner T., Heinz F.X. Adaptation of tick-borne encephalitis virus to BHK-21 cells results in the formation of multiple heparan sulfate binding sites in the envelope protein and attenuation in vivo. J. Virol. 2001, 75:5627-5637.
20. Pletnev A.G., Yamshchikov V.F., Blinov V.M. Nucleotide sequence of the genome and complete amino acid sequence of the polyprotein of tick-borne encephalitis virus. Virology 1990, 174:250-263.
21. Rey F.A., Heinz F.X., Mandl C., Kunz C., Harrison S.C. The envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution. Nature 1995, 375:291-298.
22. Roehrig J.T. Antigenic structure of flavivirus proteins. Adv. Virus Res. 2003, 59:141-175.
23. Romanova L., Gmyl A.P., Dzhivanian T.I., Bakhmutov D.V., Lukashev A.N., Gmyl L.V., Rumyantsev A.A., Burenkova L.A., Lashkevich V.A., Karganova G.G. Microevolution of tick-borne encephalitis virus in course of host alternation. Virology 2007, 362:75-84.
24. Sayle R.A., Milner-White E.J. RASMOL: biomolecular graphics for all. Trends Biochem. Sci. 1995, 20:374.
25. Suss J. Tick-borne encephalitis 2010: epidemiology, risk areas, and virus strains in Europe and Asia-an overview. Ticks Tick-Borne Dis. 2011, 2:2-15.
26. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
27. Ternovoi V.A., Kurzhukov G.P., Sokolov Y.V., Ivanov G.Y., Ivanisenko V.A., Loktev A.V., Ryder R.W., Netesov S.V., Loktev V.B. Tick-borne encephalitis with hemorrhagic syndrome, Novosibirsk region, Russia, 1999. Emerg. Infect. Dis. 2003, 9:743-746.
28. Uzcategui N.Y., Sironen T., Golovljova I., Jaaskelainen A.E., Valimaa H., Lundkvist A., Plyusnin A., Vaheri A., Vapalahti O. Rate of evolution and molecular epidemiology of tick-borne encephalitis virus in Europe, including two isolations from the same focus 44years apart. J. Gen. Virol. 2012, 93:786-796.