메뉴 건너뛰기




Volumn 5, Issue , 2012, Pages

Heat degradation of eukaryotic and bacterial DNA: An experimental model for paleomicrobiology

Author keywords

Ancient DNA; Bacterial DNA; DNA degradation; Eukaryotic DNA; Mycobacterium; Real time PCR

Indexed keywords

BACTERIA (MICROORGANISMS); EUKARYOTA; MURINAE; MYCOBACTERIUM; MYCOBACTERIUM SMEGMATIS; PROKARYOTA;

EID: 84871734733     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-528     Document Type: Article
Times cited : (19)

References (41)
  • 1
    • 0021802416 scopus 로고
    • Molecular cloning of ancient Egyptian mummy DNA
    • 10.1038/314644a0 3990798
    • Molecular cloning of ancient Egyptian mummy DNA. Paabo S, Nature 1985 314 644 645 10.1038/314644a0 3990798
    • (1985) Nature , vol.314 , pp. 644-645
    • Paabo, S.1
  • 2
    • 11144345147 scopus 로고    scopus 로고
    • Palaeomicrobiology: Current issues and perspectives
    • 10.1038/nrmicro1063 15608697
    • Palaeomicrobiology: current issues and perspectives. Drancourt M, Raoult D, Nat Rev Microbiol 2005 3 23 35 10.1038/nrmicro1063 15608697
    • (2005) Nat Rev Microbiol , vol.3 , pp. 23-35
    • Drancourt, M.1    Raoult, D.2
  • 3
    • 84981656346 scopus 로고
    • The use of the polymerase chain reaction (PCR) to detect mycobacterium tuberculosis in ancient skeletons
    • 10.1002/oa.1390030211
    • The use of the polymerase chain reaction (PCR) to detect mycobacterium tuberculosis in ancient skeletons. Spigelman M, Lemma E, Int J Osteoarchaeol 1993 3 137 143 10.1002/oa.1390030211
    • (1993) Int J Osteoarchaeol , vol.3 , pp. 137-143
    • Spigelman, M.1    Lemma, E.2
  • 4
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • 10.1038/362709a0 8469282
    • Instability and decay of the primary structure of DNA. Lindahl T, Nature 1993 362 709 715 10.1038/362709a0 8469282
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 7
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • 10.1093/nar/29.23.4793 11726688
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Hofreiter M, Jaenicke V, Serre D, Haeseler AA, Paabo S, Nucleic Acids Res 2001 29 4793 4799 10.1093/nar/29.23.4793 11726688
    • (2001) Nucleic Acids Res , vol.29 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    Haeseler, A.A.4    Paabo, S.5
  • 8
    • 17044388603 scopus 로고    scopus 로고
    • Ancient DNA
    • 10.1098/rspb.2004.2813 15875564
    • Ancient DNA. Willerslev E, Cooper A, Proc Biol Sci 2005 272 3 16 10.1098/rspb.2004.2813 15875564
    • (2005) Proc Biol Sci , vol.272 , pp. 3-16
    • Willerslev, E.1    Cooper, A.2
  • 9
    • 0029663543 scopus 로고    scopus 로고
    • Amino acid racemization and the preservation of ancient DNA
    • 10.1126/science.272.5263.864 8629020
    • Amino acid racemization and the preservation of ancient DNA. Poinar HN, Hoss M, Bada JL, Paabo S, Science 1996 272 864 866 10.1126/science.272.5263.864 8629020
    • (1996) Science , vol.272 , pp. 864-866
    • Poinar, H.N.1    Hoss, M.2    Bada, J.L.3    Paabo, S.4
  • 11
    • 0034682945 scopus 로고    scopus 로고
    • Ancient DNA: Do it right or not at all
    • 10970224
    • Ancient DNA: do it right or not at all. Cooper A, Poinar HN, Science 2000 289 1139 10970224
    • (2000) Science , vol.289 , pp. 1139
    • Cooper, A.1    Poinar, H.N.2
  • 13
    • 0000832946 scopus 로고
    • Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification
    • 10.1073/pnas.86.6.1939 2928314
    • Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification. Paabo S, Proc Natl Acad Sci USA 1989 86 1939 1943 10.1073/pnas.86.6.1939 2928314
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 1939-1943
    • Paabo, S.1
  • 14
    • 33646509013 scopus 로고    scopus 로고
    • DNA degradation with ozone
    • 10.1016/j.ijbiomac.2006.02.029 16616954
    • DNA degradation with ozone. Cataldo F, Int J Biol Macromol 2006 38 248 254 10.1016/j.ijbiomac.2006.02.029 16616954
    • (2006) Int J Biol Macromol , vol.38 , pp. 248-254
    • Cataldo, F.1
  • 15
    • 33847619360 scopus 로고    scopus 로고
    • Degradation of DNA by bisulfite treatment
    • 10.1016/j.bmcl.2007.01.040
    • Degradation of DNA by bisulfite treatment. Tanaka K, Okamoto A, Bioorgan Med Chem Lett 2007 17 1912 1915 10.1016/j.bmcl.2007.01.040
    • (2007) Bioorgan Med Chem Lett , vol.17 , pp. 1912-1915
    • Tanaka, K.1    Okamoto, A.2
  • 16
    • 33645022465 scopus 로고    scopus 로고
    • Single gene retrieval from thermally degraded DNA
    • 10.1007/BF02703559 16388133
    • Single gene retrieval from thermally degraded DNA. Zhang L, Wu Q, J Biosci 2005 30 599 604 10.1007/BF02703559 16388133
    • (2005) J Biosci , vol.30 , pp. 599-604
    • Zhang, L.1    Wu, Q.2
  • 17
    • 47749141812 scopus 로고    scopus 로고
    • Degradation of biomolecules in artificially and naturally aged teeth: Implications for age estimation based on aspartic acid racemization and DNA analysis
    • 10.1016/j.forsciint.2008.05.017 18621493
    • Degradation of biomolecules in artificially and naturally aged teeth: implications for age estimation based on aspartic acid racemization and DNA analysis. Dobberstein RC, Huppertz J, von Wurmb-Schwark N, Ritz-Timme S, Forensic Sci Int 2008 179 181 191 10.1016/j.forsciint.2008.05.017 18621493
    • (2008) Forensic Sci Int , vol.179 , pp. 181-191
    • Dobberstein, R.C.1    Huppertz, J.2    Von Wurmb-Schwark, N.3    Ritz-Timme, S.4
  • 19
    • 0037031127 scopus 로고    scopus 로고
    • Molecular analysis of ancient microbial infections
    • 10.1111/j.1574-6968.2002.tb11298.x 12167530
    • Molecular analysis of ancient microbial infections. Zink AR, Reischl U, Wolf H, Nerlich AG, FEMS Microbiol Lett 2002 213 141 147 10.1111/j.1574-6968. 2002.tb11298.x 12167530
    • (2002) FEMS Microbiol Lett , vol.213 , pp. 141-147
    • Zink, A.R.1    Reischl, U.2    Wolf, H.3    Nerlich, A.G.4
  • 20
    • 3142760181 scopus 로고    scopus 로고
    • Formation of 'non-culturable' cells of mycobacterium smegmatis in stationary phase in response to growth under suboptimal conditions and their Rpf-mediated resuscitation
    • 10.1099/mic.0.26893-0 15184555
    • Formation of 'non-culturable' cells of mycobacterium smegmatis in stationary phase in response to growth under suboptimal conditions and their Rpf-mediated resuscitation. Shleeva M, Mukamolova GV, Young M, Williams HD, Kaprelyants AS, Microbiology 2004 150 1687 1697 10.1099/mic.0.26893-0 15184555
    • (2004) Microbiology , vol.150 , pp. 1687-1697
    • Shleeva, M.1    Mukamolova, G.V.2    Young, M.3    Williams, H.D.4    Kaprelyants, A.S.5
  • 21
    • 16844383408 scopus 로고    scopus 로고
    • Co-infection of mycobacterium tuberculosis and mycobacterium leprae in human archaeological samples: A possible explanation for the historical decline of leprosy
    • 10.1098/rspb.2004.2966 15734693
    • Co-infection of mycobacterium tuberculosis and mycobacterium leprae in human archaeological samples: a possible explanation for the historical decline of leprosy. Donoghue HD, Marcsik A, Matheson C, Vernon K, Nuorala E, Molto JE, Greenblatt CL, Spigelman M, Proc Biol Sci 2005 272 389 394 10.1098/rspb.2004. 2966 15734693
    • (2005) Proc Biol Sci , vol.272 , pp. 389-394
    • Donoghue, H.D.1    Marcsik, A.2    Matheson, C.3    Vernon, K.4    Nuorala, E.5    Molto, J.E.6    Greenblatt, C.L.7    Spigelman, M.8
  • 22
    • 0034509973 scopus 로고    scopus 로고
    • Detection of leprosy in ancient human skeletal remains by molecular identification of mycobacterium leprae
    • 10989644
    • Detection of leprosy in ancient human skeletal remains by molecular identification of mycobacterium leprae. Haas CJ, Zink A, Palfi G, Szeimies U, Nerlich AG, Am J Clin Pathol 2000 114 428 436 10989644
    • (2000) Am J Clin Pathol , vol.114 , pp. 428-436
    • Haas, C.J.1    Zink, A.2    Palfi, G.3    Szeimies, U.4    Nerlich, A.G.5
  • 23
    • 78149457676 scopus 로고    scopus 로고
    • Evidence of a louse-borne outbreak involving typhus in Douai, 1710-1712 during the war of Spanish succession
    • 10.1371/journal.pone.0015405 21060879
    • Evidence of a louse-borne outbreak involving typhus in Douai, 1710-1712 during the war of Spanish succession. Nguyen-Hieu T, Aboudharam G, Signoli M, Rigeade C, Drancourt M, Raoult D, PLoS One 2010 5 15405 10.1371/journal.pone. 0015405 21060879
    • (2010) PLoS One , vol.5 , pp. 515405
    • Nguyen-Hieu, T.1    Aboudharam, G.2    Signoli, M.3    Rigeade, C.4    Drancourt, M.5    Raoult, D.6
  • 25
    • 46049107136 scopus 로고    scopus 로고
    • Technical note: A rapid diagnostic test detects plague in ancient human remains: An example of the interaction between archeological and biological approaches (Southeastern France, 16th-18th centuries)
    • 10.1002/ajpa.20818 18350578
    • Technical note: a rapid diagnostic test detects plague in ancient human remains: an example of the interaction between archeological and biological approaches (Southeastern France, 16th-18th centuries). Bianucci R, Rahalison L, Massa ER, Peluso A, Ferroglio E, Signoli M, Am J Phys Anthropol 2008 136 361 367 10.1002/ajpa.20818 18350578
    • (2008) Am J Phys Anthropol , vol.136 , pp. 361-367
    • Bianucci, R.1    Rahalison, L.2    Massa, E.R.3    Peluso, A.4    Ferroglio, E.5    Signoli, M.6
  • 27
    • 0032514632 scopus 로고    scopus 로고
    • Detection of 400-year-old yersinia pestis DNA in human dental pulp: An approach to the diagnosis of ancient septicemia
    • 10.1073/pnas.95.21.12637 9770538
    • Detection of 400-year-old yersinia pestis DNA in human dental pulp: an approach to the diagnosis of ancient septicemia. Drancourt M, Aboudharam G, Signoli M, Dutour O, Raoult D, Proc Natl Acad Sci USA 1998 95 12637 12640 10.1073/pnas.95.21.12637 9770538
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 12637-12640
    • Drancourt, M.1    Aboudharam, G.2    Signoli, M.3    Dutour, O.4    Raoult, D.5
  • 29
    • 13444282404 scopus 로고    scopus 로고
    • Bartonella quintana in a 4000-year-old human tooth
    • 10.1086/427041 15655785
    • Bartonella quintana in a 4000-year-old human tooth. Drancourt M, Tran-Hung L, Courtin J, Lumley H, Raoult D, J Infect Dis 2005 191 607 611 10.1086/427041 15655785
    • (2005) J Infect Dis , vol.191 , pp. 607-611
    • Drancourt, M.1    Tran-Hung, L.2    Courtin, J.3    Lumley, H.4    Raoult, D.5
  • 30
    • 7644224196 scopus 로고    scopus 로고
    • Molecular detection of bartonella henselae DNA in the dental pulp of 800-year-old French cats
    • 10.1086/424884 15494918
    • Molecular detection of bartonella henselae DNA in the dental pulp of 800-year-old French cats. La VD, Clavel B, Lepetz S, Aboudharam G, Raoult D, Drancourt M, Clin Infect Dis 2004 39 1391 1394 10.1086/424884 15494918
    • (2004) Clin Infect Dis , vol.39 , pp. 1391-1394
    • La, V.D.1    Clavel, B.2    Lepetz, S.3    Aboudharam, G.4    Raoult, D.5    Drancourt, M.6
  • 31
    • 33646092772 scopus 로고    scopus 로고
    • DNA examination of ancient dental pulp incriminates typhoid fever as a probable cause of the plague of Athens
    • 10.1016/j.ijid.2005.09.001 16412683
    • DNA examination of ancient dental pulp incriminates typhoid fever as a probable cause of the plague of Athens. Papagrigorakis MJ, Yapijakis C, Synodinos PN, Baziotopoulou-Valavani E, Int J Infect Dis 2006 10 206 214 10.1016/j.ijid.2005.09.001 16412683
    • (2006) Int J Infect Dis , vol.10 , pp. 206-214
    • Papagrigorakis, M.J.1    Yapijakis, C.2    Synodinos, P.N.3    Baziotopoulou-Valavani, E.4
  • 35
    • 0037205001 scopus 로고    scopus 로고
    • Specialized DNA polymerases, cellular survival, and the genesis of mutations
    • 10.1126/science.1070236 12040171
    • Specialized DNA polymerases, cellular survival, and the genesis of mutations. Friedberg EC, Wagner R, Radman M, Science 2002 296 1627 1630 10.1126/science.1070236 12040171
    • (2002) Science , vol.296 , pp. 1627-1630
    • Friedberg, E.C.1    Wagner, R.2    Radman, M.3
  • 36
    • 0035855903 scopus 로고    scopus 로고
    • Fidelity and infidelity
    • 10.1038/35093178 11557959
    • Fidelity and infidelity. Radman M, Nature 2001 413 115 10.1038/35093178 11557959
    • (2001) Nature , vol.413 , pp. 115
    • Radman, M.1
  • 39
    • 14644433813 scopus 로고    scopus 로고
    • Damage and repair of ancient DNA
    • 10.1016/j.mrfmmm.2004.06.060 15748652
    • Damage and repair of ancient DNA. Mitchell D, Willerslev E, Hansen A, Mutat Res 2005 571 265 276 10.1016/j.mrfmmm.2004.06.060 15748652
    • (2005) Mutat Res , vol.571 , pp. 265-276
    • Mitchell, D.1    Willerslev, E.2    Hansen, A.3
  • 40
    • 29944434726 scopus 로고    scopus 로고
    • AsnB is involved in natural resistance of mycobacterium smegmatis to multiple drugs
    • 10.1128/AAC.50.1.250-255.2006
    • AsnB is involved in natural resistance of mycobacterium smegmatis to multiple drugs. Ren H, Liu J, Antimicrob Agents Ch 2006 50 250 255 10.1128/AAC.50.1.250-255.2006
    • (2006) Antimicrob Agents Ch , vol.50 , pp. 250-255
    • Ren, H.1    Liu, J.2
  • 41
    • 7244257594 scopus 로고    scopus 로고
    • PerlPrimer: Cross-platform, graphical primer design for standard, bisulphite and real-time PCR
    • 10.1093/bioinformatics/bth254 15073005
    • PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR. Marshall OJ, Bioinformatics 2004 20 2471 2472 10.1093/bioinformatics/bth254 15073005
    • (2004) Bioinformatics , vol.20 , pp. 2471-2472
    • Marshall, O.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.