Deciphering the possible mechanism of exogenous NO alleviating alkali stress on cucumber leaves by transcriptomic analysis

Scientia Horticulturae

Volumn 150, Issue , 2013, Pages 377-386

  Gao, Zhongxi ^a   Wehner, Todd C ^b   Chen, Hao ^a   Lin, Yan ^a   Wang, Xiufeng ^a   Wei, Min ^a   Yang, Fengjuan ^a   Shi, Qinghua ^a  

^a SHANDONG AGRICULTURAL UNIVERSITY   (China)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Alkali stress; Alleviating effects; Cucumber; Gene expression profiles; Nitric oxide

Indexed keywords

CROP YIELD; CYTOLOGY; EXPERIMENTAL STUDY; GENE EXPRESSION; NITRIC OXIDE; POLYMERASE CHAIN REACTION; REAL TIME; VINE;

CUCUMIS SATIVUS;

EID: 84871723409     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2012.11.033     Document Type: Article

References (52)

1. Arnon D.I. Copper enzymes in isolated chloroplasts. Polyphenoloxidase in beta vulgaris. Plant Physiol 1949, 24:1-15.
2. Audic S., Claverie J.M. The significance of digital gene expression profiles. Genome Res. 1997, 7:986-995.
3. Benjamini Y., Drai D., Elmer G., Kafkafi N., Golani I. Controlling the false discovery rate in behavior genetics research. Behav. Brain Res. 2001, 125:279-284.
4. +/ATP stoichiometries of transmembrane transport. Plant Biol. 2008, 5:159-166.
5. Burzyński M., Klobus G. Changes of photosynthetic parameters in cucumber leaves under Cu, Cd, and Pb stress. Photosynthetica 2004, 42:505-510.
6. Caffarri S., Passarini F., Bassi R., Croce R. A specific binding site for neoxanthin in the monomeric antenna proteins CP26 and CP29 of photosystem II. FEBS Lett. 2007, 581:4704-4710.
7. Carvalhais L.C., Dennis P.G., Fedoseyenko D., Hajirezaei M.R., Borriss R., von Wirén N. Root exudation of sugars amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency. J. Plant Nutr. Soil Sci. 2011, 174:3-11.
8. Cellini A., Corpas F.J., Barroso J.B., Masia A. Nitric oxide content is associated with tolerance to bicarbonate-induced chlorosis in micropropagated Prunus explants. J. Plant Physiol. 2011, 168:1543-1549.
9. Chen F., Wang F., Sun H., Cai Y., Mao W., Zhang G., Vincze E., Wu F. Genotype-dependent effect of exogenous nitric oxide on Cd-induced changes in antioxidative metabolism, ultrastructure, and photosynthetic performance in barley seedlings (Hordeum vugare). J. Plant Growth Regul. 2010, 29:394-408.
10. Conde A., Chaves M.M., Gerós H. Membrane transport, sensing and signaling in plant adaptation to environmental stress. Plant Cell Physiol. 2011, 52:1583-1602.
11. Du Z., Zhou X., Ling Y., Zhang Z., Su Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 2010, 38(Suppl. 2):W64-W70.
12. Ekman D.R., Lorenz W.W., Przybyla A.E., Wolfe N.L., Dean J.F. SAGE analysis of transcriptome responses in Arabidopsis roots exposed to 2,4,6-trinitrotoluene. Plant Physiol. 2003, 133:1397-1406.
13. 3 treatment. BMC Plant Biol. 2010, 10:153.
14. García M.J., Lucena C., Romera F.J., Alcántara E., Pérez-Vicente R. Ethylene and nitric oxide involvement in the up-regulation of key genes related to iron acquisition and homeostasis in Arabidopsis. J. Exp. Bot. 2010, 61:3885-3899.
15. Goodstein D.M., Shu S., Howson R., Neupane R., Hayes R.D., Fazo J., Mitros T., Dirks W., Hellsten U., Putnam N., Rokhsar D.S. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 2012, 40(D1):D1178-D1186.
16. Graziano M., Beligni M.V., Lamattina L. Nitric oxide improves internal iron availability in plants. Plant Physiol. 2002, 130:1852-1859.
17. Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., et al. The genome of the cucumber, Cucumis sativus L. Nat. Genet. 2009, 41:1275-1281.
18. Ifuku K., Endo T., Shikanai T., Aro E.M. Structure of the chloroplast NADH dehydrogenase-like complex: nomenclature for nuclear-encoded subunits. Plant Cell Physiol. 2011, 52:1560-1568.
19. 3 and NaCl stresses in leaves and roots of Leymus chinensis. Plant Sci. 2008, 175:784-792.
20. Lamattina L., García-Mata C., Graziano M., Pagnussat G. Nitric oxide: the versatility of an extensive signal molecule. Annu. Rev. Plant Biol. 2003, 54:109-136.
21. Lehtimäki N., Lintala M., Allahverdiyeva Y., Aro E.M., Mulo P. Drought stress-induced upregulation of components involved in ferredoxin-dependent cyclic electron transfer. J. Plant Physiol. 2010, 167:1018-1022.
22. Li J., Shi D.C. Photosynthesis, chlorophyll fluorescence, inorganic ion and organic acid accumulations of sunflower in responses to salt and salt-alkaline mixed stress. Photosynthetica 2010, 48:127-134.
23. Liu J., Guo W.Q., Shi D.C. Seed germination, seedling survival, and physiological response of sunflowers under saline and alkaline conditions. Photosynthetica 2010, 48:278-286.
24. Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001, 25:402-408.
25. López-Bucio J., Nieto-Jacobo M.F., Ramírez-Rodríguez V., Herrera-Estrella L. Organic acid metabolism in plants: from adaptive physiology to transgenic varieties for cultivation in extreme soils. Plant Sci. 2000, 160:1-13.
26. Luciński R., Misztal L., Samardakiewicz S., Jackowski G. The thylakoid protease Deg2 is involved in stress-related degradation of the photosystem II light-harvesting protein Lhcb6 in Arabidopsis. New Phytol. 2011, 192:74-86.
27. Mahajan S., Tuteja N. Cold, salinity and drought stresses: an overview. Arch. Biochem. Biophys. 2005, 444:139-158.
28. Meng Y., Liu F., Pang C., Fan S., Song M., Wang D., Li W., Yu S. Label-free quantitative proteomics analysis of cotton leaf response to nitric oxide. J. Proteome Res. 2011, 10:5416-5432.
29. Miyama M., Tada Y. Transcriptional and physiological study of the response of Burma mangrove (Bruguiera gymnorhiza) to salt and osmotic stress. Plant Mol. Biol. 2008, 68:119-129.
30. Mori S. Iron acquisition by plants. Curr. Opin. Plant Biol. 1999, 2:250-253.
31. Morrissy A.S., Morin R.D., Delaney A., Zeng T., McDonald H., Jones S., Zhao Y., Hirst M., Marra M.A. Next-generation tag sequencing for cancer gene expression profiling. Genome Res. 2009, 19:1825-1835.
32. Munns R., James R.A., Läuchli A. Approaches to increasing the salt tolerance of wheat and other cereals. J. Exp. Bot. 2006, 57:1025-1043.
33. Oburger E., Jones D.L., Wenzel W.W. Phosphorus saturation and pH differentially regulate the efficiency of organic acid anion-mediated P solubilization mechanisms in soil. Plant Soil 2011, 341:363-382.
34. Pareek A., Singla S.L., Grover A. Short-term salinity and high temperature stress-associated ultrastructural alterations in young leaf cells of Oryza sativa L. Ann. Bot. 1997, 80:629-639.
35. Samol I., Shapiguzov A., Ingelsson B., Fucile G., Crèvecoeur M., Vener A.V., Rochaix J.D., Goldschmidt-Clermont M. Identification of a photosystem II phosphatase involved in light acclimation in Arabidopsis. Plant Cell 2012, 24:2596-2609.
36. Shi D., Sheng Y. Effect of various salt-alkaline mixed stress conditions on sunflower seedlings and analysis of their stress factors. Environ. Exp. Bot. 2005, 54:8-21.
37. Shi Q., Ding F., Wang X., Wei M. Exogenous nitric oxide protect cucumber roots against oxidative stress induced by salt stress. Plant Physiol. Biochem. 2007, 45:542-550.
38. Shu S., Guo S.R., Sun J., Yuan L.Y. Effects of salt stress on the structure and function of the photosynthetic apparatus in Cucumis sativus and its protection by exogenous putrescine. Physiol. Plant. 2012, 146:285-296.
39. Siddiqui M.H., Al-Whaibi M.H., Basalah M.O. Role of nitric oxide in tolerance of plants to abiotic stress. Protoplasma 2011, 248:447-455.
40. Szal B., Podgórska A. The role of mitochondria in leaf nitrogen metabolism. Plant Cell Environ. 2012, 35:1756-1768.
41. Thoen P.A.C., Ariyurek Y., Thygesen H.H., Vreugdenhil E., Vossen R.H., de Menezes R.X., Boer J.M., van Ommen G.J., den Dunnen J.T. Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res. 2008, 36:e141.
42. Tarantino D., Santo N., Morandini P., Casagande F., Braun H.P., Heinemeyer J., Vigani G., Soave C., Murgia I. AtFer4 ferritin is a determinant of iron homeostasis in Arabidopsis thaliana heterotrophic cells. J. Plant Physiol. 2010, 167:1598-1605.
43. Tewari R.K., Kumar P., Sharma P.N. Magnesium deficiency induced oxidative stress and antioxidant responses in mulberry plants. Sci. Hortic. 2006, 108:7-14.
44. Vigani G. Discovering the role of mitochondria in the iron deficiency-induced metabolic responses of plants. J. Plant Physiol. 2012, 169:1-11.
45. Wang B.L., Tang X.Y., Cheng L.Y., Zhang A.Z., Zhang W.H., Zhang F.S., Liu J.Q., Gao Y., Allan D.L., Vance C.P., Shen J.B. Nitric oxide in involved in phosphorus deficiency-induced cluster-root development and citrate exudation white lupin. New Phytol. 2010, 187:1112-1123.
46. Wientjes E., van Stokkum I.H., van Amerongen H., Croce R. Excitation-energy transfer dynamics of higher plant photosystem I light-harvesting complexes. Biophys. J. 2011, 100:1372-1380.
47. Xu P.L., Guo Y.K., Bai J.K., Wang X.J. Effects of long-term chilling on ultrastructure and antioxidant activity in leaves of two cucumber cultivars under low light. Physiologia Plantarum. 2008, 132:467-478.
48. Yang C.W., Chong J.N., Li C.Y., Kim C.M., Shi D.C., Wang D.L. Osmotic adjustment and ion balance traits of an alkali resistant halophyte Kochia sieversiana during adaptation to salt and alkali conditions. Plant Soil 2007, 294:263-276.
49. Yang C.W., Shi D.C., Wang D.L. Comparative effects of salt and alkali stresses on growth, osmotic adjustment and ionic balance of an alkali-resistant halophyte suaeda glauca (Bge.). Plant Growth Regul. 2008, 56:179-190.
50. Yang C.W., Xu H.H., Wang L.L., Liu J., Shi D., Wang D.L. Comparative effects of salt-stress and alkali-stress on the growth, photosynthesis, solute accumulation, and ion balance of barley plants. Photosynthetica 2009, 47:79-86.
51. Yao D., Zhang X., Zhao X., Liu C., Wang C., Zhang Z., Zhang C., Wei Q., Wang Q., Yan H., Li F., Su Z. Transcriptome analysis reveals salt-stress-regulated biological processes and key pathways in roots of cotton (Gossypium hirsutum L.). Genomics 2011, 98:47-55.
52. Zeller G., Henz S.R., Widmer C.K., Sachsenberg T., Rätsch G., Weigel D., Sascha L. Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant J. 2009, 58:1068-1082.