Klebsiella michiganensis sp. nov., a new bacterium isolated from a tooth brush holder

Current Microbiology

Volumn 66, Issue 1, 2013, Pages 72-78

  Saha, Ratul ^a   Farrance, Christine E ^b   Verghese, Bindhu ^b   Hong, Sunhee ^b   Donofrio, Robert S ^a  

^a NSF INTERNATIONAL   (United States)

^b Accugenix Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; BACTERIAL DNA; BACTERIAL RNA; CYTOSINE; FATTY ACID; GUANINE; RNA 16S; THYMINE;

ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOCHEMISTRY; CHEMOTAXONOMY; CONTROLLED STUDY; DENTAL DEVICE; GYRA GENE; GYRB GENE; KLEBSIELLA; KLEBSIELLA AEROGENES; KLEBSIELLA MICHIGANENSIS; KLEBSIELLA OXYTOCA; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RIBOTYPING; RNA SEQUENCE; RPOB GENE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TOOTH BRUSH HOLDER; WHOLE CELL;

BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; ENVIRONMENTAL MICROBIOLOGY; FATTY ACIDS; HUMANS; KLEBSIELLA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); ENTEROBACTER AEROGENES; KLEBSIELLA; KLEBSIELLA OXYTOCA; NEGIBACTERIA;

EID: 84871614759     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-012-0245-x     Document Type: Article

References (21)

1. Barrow GL, Feltham RKA (2004) Cowan and steel's manual for the identification of medical bacteria, 3rd edn. Cambridge University Press, Cambridge
2. Brisse S, Verhoef J (2001) Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC gene sequencing and automated ribotyping. Int J Syst Evol Microbiol 51:915-924
3. Brosius J, Palmer ML, Kennedy PJ et al (1978) Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli. Proc Natl Acad Sci 75:4801-4805
4. Cashion P, Holder-Franklin MA, McCully J et al (1977) A rapid method for base determination of bacterial DNA. Anal Biochem 81:461-466
5. Cole JR, Chai B, Marsh TL et al (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31:442-443
6. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133-142
7. Drancourt M, Bollet C, Carta A et al (2001) Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int J Syst Evol Microbiol 51:925-932
8. Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184-192
9. Kämpfer P, Ruppel S, Remus S (2005) Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae. Syst Appl Microbiol 28:213-221
10. Kimura M (1980) A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
11. Kovtunovych G, Lytvynenko T, Negrutska V et al (2003) Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene. Res Microbiol 154:587-592
12. Li X, Zhang D, Chen F et al (2004) Klebsiella singaporensis sp. nov., a novel isomaltulose-producing bacterium. Int J Syst Evol Microbiol 54:2131-2136
13. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
14. Mollet C, Drancourt M, Raoult D (1997) rpoB sequence analysis as a novel basis for bacterial identification. Mol Microbiol 26:1005-1011
15. Rosenblueth M, Martinez L, Silva J et al (2004) Klebsiella variicola, a novel species with clinical and plant associated isolates. Syst Appl Microbiol 27:27-35
16. ® characterization system: an overview of automated ribotyping. In: Miller MJ (ed) Encyclopedia of rapid microbiological methods, vol 3. DHI Publishing, PDA, Bethesda
17. Stephan R, Van Trappen S, Cleenwerck I et al (2007) Enterobacter turicensis, sp. nov. and Enterobacter helveticus, sp. nov., isolated from fruit powder. Int J Syst Evol Microbiol 57:820-826
18. Tamura K, Peterson D, Peterson N et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
19. Thompson JD, Gibson TJ, Plewniak F et al (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
20. Wayne LG, Brenner DJ, Colwell RR et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
21. Yamamoto S, Kasai H, Arnold DL et al (2000) Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiol 146:2385-2394