Antimicrobial potentiality of a halophilic strain of Streptomyces sp. VPTSA18 isolated from the saltpan environment of Vedaranyam, India

Annals of Microbiology

Volumn 62, Issue 3, 2012, Pages 1039-1047

  Vijayakumar, Ramasamy ^a   Selvam, Kanesan Panneer ^b   Muthukumar, Chinnasamy ^c   Thajuddin, Nooruddin ^a   Panneerselvam, Annamalai ^d   Saravanamuthu, Rengasamy ^e  

^a BHARATHIDASAN UNIVERSITY   (India)

^b MR Government Arts College   (India)

^c KING SAUD UNIVERSITY   (Saudi Arabia)

^d A V V M SRI PUSHPAM COLLEGE   (India)

^e A V C COLLEGE AUTONOMOUS   (India)

Author keywords

16S rDNA sequencing; Antimicrobial activity; Halophilic actinomycete; Streptomyces sp. VPTSA18

Indexed keywords

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); STREPTOMYCES; STREPTOMYCES SP.;

EID: 84871590871     PISSN: 15904261     EISSN: 18692044     Source Type: Journal    
DOI: 10.1007/s13213-011-0345-z     Document Type: Article

References (51)

1. Anderson AS, Wellington EMH (2001) The taxonomy of Streptomyces and related genera. Int J Syst Evol Microbiol 51:797-814 (Pubitemid 32505652)
2. Boone KE, Pine L (1968) Rapid method for characterization of actinomycetes by cell wall composition. Appl Microbiol 16:279-284
3. Bordoloi GN, Kumarim B, Guha A, Bordoloi M, Yadav RN, Roy MK, Bora TC (2001) Isolation and structure elucidation of a new antifungal and antibacterial antibiotic produced by Streptomyces sp. 201. Biosci Biotechnol Biochem 65:1856-1858 (Pubitemid 33617794)
4. Davelos AL, Xiao KJ, Flor M, Kinkel LL (2004) Genetic and phenotypic traits of Streptomyces used to characterize antibiotic activities of field-collected microbes. Can J Microbiol 50:79-89 (Pubitemid 38594742)
5. Deepika TL, Kannabiran K (2009) A report on the antidermatophytic activity of actinomycetes. Int J Integ Biol 6:132-136
6. Dhanasekaran D, Thajuddin N, Panneerselvam A (2008) An antifungal compound: 4′phenyl-1-napthyl-phenyl acetamide from Streptomyces sp. DPTB16. Facta Universitatis Ser Med Biol 15:7-12
7. Dhanasekaran D, Thajuddin N, Panneerselvam A (2009) Distribution and ecobiology of antagonistic streptomycetes from agriculture and coastal soil in Tamilnadu, India. J Cult Collection 6:10-20
8. Egorov NS (1985) Antibiotics, a scientific approach. Mir Publishers, Moscow
9. Fukuda DS, Mynderse JS, Baker PJ, Berry DM, Boeck LD, Yao RC, Mertz FP, Nakatsukasa WM, Mabe J, Ott J, Counter FT, Ensminger PW, Allen NE, Alborn W, Hobbs JN (1990) A80915, a new antibiotic complex produced by Streptomyces aculeolatus. Discovery, taxonomy, fermentation, isolation, characterization and antibacterial evaluation. J Antibiot 43:623-633 (Pubitemid 20203673)
10. Gandhimathi R, Arunkumar M, Selvin J, Thangavelu T, Sivaramakrishnan S, Kiran GS, Shanmughapriya S, Natarajaseenivasan K (2008) Antimicrobial potential of sponge associated marine actinomycetes. J Mycol Med 18:16-22
11. Goodfellow M, Ferguson EV, Sanglier JJ (1992) Numerical classification and identification of Streptomyces species-a review. Gene 115:225-233
12. Hain T, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E, Rainey FA (1997) Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers. Int J Syst Bacteriol 47:202-206 (Pubitemid 27027246)
13. Harindran J, Gupte TE, Naik SR (1999) HA-1-92, a new antifungal antibiotic produced by Streptomyces CDRIL-312: Fermentation, isolation, purification and biological activity. World J Microbiol Biotechnol 15:425-430 (Pubitemid 29478312)
14. Higgins DG, Bleasby AT, Fuchs R (1992) Clustal V: improved software for multiple sequence alignment. CABIOS 8:189-191
15. Ivanova V, Schlegel R (1997) Structure elucidation of the antibiotic demalonylniphimycin by two-dimensional NMR techniques. Actinomycetes 8:1-9
16. Kataoka M, Ueda K, Kudo T, Seki T, Yoshida T (1997) Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus Streptomyces. FEMS Microbiol Lett 151:249-255 (Pubitemid 27293308)
17. Kim B, Sahin N, Minnikin DE, Zakrzewska-Czerwinska J, Mordarski M, Goodfellow M(1999) Classification of thermophilic streptomycetes, including the description of Streptomyces thermoalkalitolerans sp. nov. Int J Syst Bacteriol 49:7-17 (Pubitemid 29225858)
18. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120 (Pubitemid 11166431)
19. Kon-Wendish F, Schneider J (1992) Phage-typing - a useful tool in actinomycetes systematics. Gene 115:243-247
20. Kreuze JF, Suomalainen S, Paulin L, Valkonen JPT (1999) Phylogenetic analysis of 16S rRNA genes and PCR analysis of the nec1 gene from Streptomyces spp. causing common scab pitted scab and netted scab in Finland. Phytopathology 89:462-469 (Pubitemid 29250495)
21. Kumar SK, Tamura IB, Jakobsen NM (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
22. Kuster E, Williams ST (1964) Selection of media for isolation of streptomycetes. Nature 202:928-929
23. Lechevalier HA, Lechevalier MP (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20:435-443
24. Liu Z, Shi Y, Zhang Y, Zhou Z, Lu Z, Li W, Huang Y, Rodríguez C, Goodfellow M (2005) Classification of Streptomyces griseus (Krainsky 1914) Waksman and Henrici 1948 and related species and the transfer of "Microstreptospora cinerea" to the genus Streptomyces as Streptomyces yanii sp. nov. Int J Syst Evol Microbiol 55:1605-1610 (Pubitemid 41029448)
25. Moncheva P, Tishkov S, Dimitrova N, Chipeva V, Nikolova SA, Bogatzevska N (2002) Characteristics of soil actinomycetes from Antarctica. J Cult Collection 3:3-14
26. Narayana KJP, Ravikiran D, Vijayalakshmi M (2005) Screening of Streptomyces species from cultivated soil for broad-spectrum antimicrobial compounds. Asian J Microbiol Biotechnol Environ Sci 7:121-124 (Pubitemid 40704191)
27. Ochi K (1995) A taxonomic study of the genus Streptomyces by analysis of ribosomal protein AT-L30. Int J Syst Bacteriol 45:507-514
28. Omura S, Iwai Y, Hinotozawa K, Tanaka H, Takahashi Y, Nakagawa A (1982) OM-704 A, a new antibiotic active against Grampositive bacteria produced by Streptomyces sp. J Antibiot 35:1425-1429 (Pubitemid 13217752)
29. Pridham TG, Tresner HD (1974) Streptomycetaceae. In: Buchanan RE, Gibbons NE (eds) Bergey's manual of determinative bacteriology, 8th edn. Williams and Wilkins, Baltimore pp 748-829
30. Raja A, Prabakaran P, Gajalakshmi P (2009) Isolation and screening of antibiotic psychrophilic actinomycetes and its nature from Rothang Hill soil against viridians Streptococcus sp. Res J Microbiol 10:1-6
31. Remya M, Vijayakumar R (2008) Isolation and characterization of marine antagonistic actinomycetes from West Coast of India. Facta Universitatis Ser Med Biol 15:13-19
32. Ridell M, Wallerstrom G, Williams ST (1986) Immunodiffusion analysis of phonetically defined strains of Streptomyces, Streptoverticillium and Nocardiopsis. Syst Appl Microbiol 8:24-27
33. Saadoun I, Al-Momani F (2000) Activity of North Jordan streptomycete isolates against Candida albicans. World J Microbiol Biotechnol 16:139-142 (Pubitemid 30322743)
34. Sahin N, Ugur A (2003) Investigation of the antimicrobial activity of some isolates. Turk J Biol 27:79-84
35. Saitou N, Nei M (1987) The neighbour joining method: a new method for reconstructing phylogenetic trees from evolutionary distance data. Mol Biol Evol 4:406-425
36. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:312-340
37. Song J, Lee SC, Kang JW, Beak HJ, Suh (2004) Phylogenetic analysis of Streptomyces spp. isolated from potato scab lesions in Korea on the basis of 16S rRNA gene and 16S rRNA internally transcribed spacer sequences. Int J Syst Evol Microbiol 54:203-209 (Pubitemid 38181290)
38. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479-491 (Pubitemid 27163916)
39. Taguchi S, Kolima S, Terabe M, Kumazawa Y, Kohriyama H, Suzuki M, Miura KI, Momose H (1997) Molecular phylogenetic characterization of Streptomyces protease inhibitor family. J Mol Evol 44:542-551 (Pubitemid 27227500)
40. Takeuchi T, Sawada H, Tanaka F, Matsuda I (1966) Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences. Int J Syst Bacteriol 46:476-479
41. Vijayakumar R, Muthukumar C, Thajuddin N, Panneerselvam A, Saravanamuthu R (2007) Studies on the diversity of actinomycetes in the Palk Strait region of Bay of Bengal, India. Actinomycetologica 21:59-65
42. Vijayakumar R, Panneerselvam K, Muthukumar C, Thajuddin N, Panneerselvam A, Saravanamuthu R (2011) Optimization of antimicrobial production by the marine actinomycetes Streptomyces afghaniensis VPTS3-1 isolated from Palk Strait, East Coast of India. Indian J Microbiol. doi:10.1007/s12088-011-0138-x
43. Vimal V, Benita Mercy R, Kannabiran K (2009) Antimicrobial activity of marine actinomycete, Nocardiopsis sp. VITSVK 5 (FJ973467). Asian J Med Sci 1:57-63
44. Waksman, SA (1967) Classification of the genus Streptomyces into series, groups and section. In: The actinomycetes: a summary of current knowledge. The Ronald Press, New York, pp. 117-134
45. Waksman SA, Henrici AT (1943) The nomenclature and classification of the actinomycetes. J Bacteriol 46:337-341
46. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S rDNA amplification for phylogenetic study. J Bacteriol 173:697-703
47. Wilkins K, Scholler C (2009) Volatile organic metabolites from selected Streptomyces strains. Actinomycetologica 23:27-33
48. Williams ST, Cross T (1971) Isolation, purification cultivation and preservation of actinomycetes. Methods Microbiol 4:295-334
49. AL. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey's manual of determinative bacteriology, vol 4. Williams and Wilkins, Baltimore
50. Wilson K (1990) Preparation of genomic DNA from bacteria. In: Ausubel Kingstan RE, Moore DD, Smith JA, Seidman JG, Struhl K (eds) Current protocol in molecular biology. Greene Publishing & Wiley Inter Science, New York, chapters 2-4
51. Wu XC, Chen WF, Qian CD, Li O, Li P, Wen YP (2007) Isolation and identification of newly isolated antagonistic Streptomyces sp. strain AP19-2 producing chromamycins. J Microbiol 45:499-504