Cryptic taxa should have names: Reflections in the glasswort genus Salicornia (Amaranthaceae)

Taxon

Volumn 61, Issue 6, 2012, Pages 1227-1239

  Kadereit, Gudrun ^a   Piirainen, Mikko ^b   Lambinon, Jacques ^c   Vanderpoorten, Alain ^c  

^a JOHANNES GUTENBERG UNIVERSITY   (Germany)

^b UNIVERSITY OF HELSINKI   (Finland)

^c UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Cryptic species; Incongruence; Molecules; Morphology; Ploidy; Salicornia; Subspecies

Indexed keywords

CRYPSIS; DICOTYLEDON; GENOTYPE; GEOGRAPHICAL DISTRIBUTION; MOLECULAR ANALYSIS; MORPHOLOGY; NOMENCLATURE; PLOIDY; SUBSPECIES; TAXONOMY;

EID: 84871477663     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.1002/tax.616005     Document Type: Review

References (66)

1. Akhani, H. 2003. Salicornia persica Akhani (Chenopodiaceae) a re markable new species from Central Iran. Linzer Biol. Beitr. 35: 607-612.
2. Akhani, H. 2008. Taxonomic revision of the genus Salicornia L. (Che-nopodiaceae) in central and southern Iran. Pakistan J. Bot. 40: 1635-1655.
3. Andres-Sanchez, S., Rico, E., Herrero, A., Santos-Vicente, M. & Martinez-Ortega, M.M. 2009. Combining traditional morpho-metrics and molecular markers in cryptic taxa: Towards an updated integrative taxonomic treatment for Veronica subgenus Pentasepalae (Plantaginaceae sensu APG II) in the western Mediterranean. Bot. J. Linn. Soc. 159: 68-87.
4. Ball, P.W. & Akeroyd, J.R. 1993. Salicornia L. Pp. 121-123 in: Tutin, T.G., Burges, N.A., Chater, A.O., Edmondson, J.R., Heywood, V.H., Moore, D.M., Valentine, D.H., Walters, S.M. & Webb, D.A. (eds.), Flora Europaea, vol. 1, Psilotaceae to Platanaceae. Cambridge: Cambridge University Press.
5. Bardy, K.E., Schönswetter, P., Schneeweiss, G.M., Fischer, M.A. & Albach, D.C. 2011. Extensive gene flow blurs species boundaries among Veronica barrelieri, V. orchidea and V. spicata (Plantaginaceae) in southeastern Europe. Taxon 60: 108-121.
6. Barraclough, T.G. & Savolainen, V. 2001. Evolutionary rates and species diversity in flowering plants. Evolution 55: 677-683.
7. Beer, S.S., Beer, A.S., Milkova, E.D., Sutyagina, P.A. & Farukshina, E.T. 2011. New data on chromosome numbers of Salicornia (Chenopodiaceae) in European Russia. Bot. Zhurn. 96: 1135-1140.
8. Beldade, P., Koops, K. & Brakefield, P.M. 2002. Developmental constraints versus flexibility in morphological evolution. Nature 416: 844-847.
9. Bickford, D., Lohman, D.J., Sodhi, N.S., Ng, P.K.L., Meier, R., Winker, K., Ingram, K.K. & Das, I. 2006. Cryptic species as a window on diversity and conservation. Trends Ecol. Evol. 22: 148-155.
10. Butler, J.M., Dodd, C.K., Jr., Aresco, M. & Austin, J.D. 2011. Morphological and molecular evidence indicates that the Gulf Coast box turtle (Terrapene carolina major) is not a distinct evolutionary lineage in the Florida Panhandle. Biol. J. Linn. Soc. 102: 889-901.
11. Clemants, S.E. 2006. Chenopodiaceae. Pp. 212-221 in: Iwatsuki, K., Boufford, D.E. & Ohba, H. (eds.), Flora of Japan, vol. 2a, Angiospermae, Dicotyledoneae, Archichlamydeae(a). Tokyo: Kodansha.
12. Dalby, D.H. 1975. Salicornia L. Pp. 186-188 in: Stace, C.A. (ed.), Hybridization and the flora of the British Isles. London: Academic Press.
13. Dumortier, B. 1868. Bouquet du littoral Belge. Bull. Soc. Roy. Bot. Belgique 7: 318-371.
14. Egge, J.J.D. & Simons, A.M. 2006. The challenge of truly cryptic diversity: Diagnosis and description of a new madtom catfish (Ictaluridae: Noturus). Zool. Scripta 35: 581-595.
15. Fritsch, R. 1991. Index to bryophyte chromosome counts. Bryophyt. Biblioth. 40: 1-352.
16. Funk, D.J. & Omland, K.E. 2003. Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Rev. Ecol. Evol. 34: 397-423.
17. Géhu, J.M. 1992. Les salicornes annuelles d'Europe: Système taxonomique et essai de clé de détermination. Colloq. Phytosoc. 18: 227-241.
18. Ghaffari, S.M., Saydrasi, L., Ebrahimzadeh, H. & Akhani, H. 2006. Chromosome numbers and karyotype analyses of species of sub-family Salicornioideae (Chenopodiaceae) from Iran. Iran. J. Bot. 12: 128-135.
19. Greuter, W., Burdet, H.M. & Long, G. 1984. Med-Checklist, vol. 1, Pteridophyta (ed. 2), Gymnospermae, Dicotyledones (Acanthaceae-Cneoraceae). Genève: Conservatoire et Jardin Botaniques.
20. Grube, M. & Kroken, S. 2000. Molecular approaches and the concept of species and species complexes in lichenized fungi. Mycol. Res. 104: 1284-1294.
21. Harper, J.T., Gile, G.H., James, E.R., Carpenter, K.J. & Keeling, P.J. 2009. The inadequacy of morphology for species and genus delineation in microbial eukaryotes: An example from the parabsalian termite symbiont Coronympha. PLoS One 4(8): e6577, doi:10.1371/journal.pone.0006577
22. Heinrichs, J., Hentschel, J., Bombosch, A., Fiebig, A., Reise, J., Edelmann, M., Kreier, P., Schäfer-Verwimp, A., Caspari, S., Schmidt, A.R., Zhu, R.L., Konrat, M. von, Shaw, B. & Shaw, A.J. 2010. One species or at least eight? Delimitation and distribtion of Frullania tamarisci (L.) Dumort. s.l. (Jungermanniopsida, Porellales) inferred from nuclear and chloroplast markers. Molec. Phylogen. Evol. 56: 1105-1114.
23. Holyoak, D.T. & Pedersen, N. 2007. Conflicting molecular and morphological evidence of evolution within the Bryaceae (Bryopsida) and its implications for generic taxonomy. J. Bryol. 29: 111-124.
24. Hooker, J.D. 1870. The Student's Flora of the British Islands. London: Macmillan.
25. Hörandl, E. & Stuessy, T.F. 2010. Paraphyletic groups as natural units of biological classification. Taxon 59: 1641-1653.
26. Huttunen, S. & Ignatov, M.S. 2010. Evolution and taxonomy of aquatic species in the genus Rhynchostegium (Brachytheciaceae, Bryophyta). Taxon 59: 791-808.
27. Jalas, J. & Suominen, J. 1980. Atlas florae europaeae: Distribution of vascular plants in Europe, vol. 5, Chenopodiaceae to Basellaceae. Helsinki: The Committee for Mapping the Flora of Europe & Societas Biologica Fennica Vanamo.
28. Kadereit, G. & Freitag, H. 2011. Molecular phylogeny of Cam-phorosmeae (Camphorosmoideae, Chenopodiaceae): Implications for biogeography, evolution of C-4 photosynthesis and taxonomy. Taxon 60: 51-78.
29. Kadereit, G., Ball, P., Beer, S., Mucina, L., Sokoloff, D., Teege, P., Yaprak, A.E. & Freitag, H. 2007. A taxonomic nightmare comes true: Phylogeny and biogeography of glassworts (Salicornia L., Chenopodiaceae). Taxon 56: 1143-1170.
30. Kaligaric, M., Bohanec, B., Simonovik, B. & Sajna, N. 2008. Genetic and morphologic variability of annual glassworts (SalicorniaL.) from the Gulf of Trieste (Northern Adriatic). Aquatic Bot. 89: 275-282.
31. Kelly, L.J., Ameka, G.K. & Chase, I 2010. DNA barcoding of African Podostemataceae (river-weeds): A test of proposed barcode regions. Taxon 59: 251-260.
32. Kreier, H.P., Feldberg, K., Mahr, F., Bombosch, A., Schmidt, A.R., Zhu, R.L., Konrat, M. von, Shaw, B., Shaw, A.J. & Heinrichs, J. 2010. Phylogeny of the leafy liverwort Ptilidium: Cryptic speciation and shared haplotypes between the northern and southern hemispheres. Molec. Phylogen. Evol. 57: 1260-1267.
33. Lahondère, C. 2004. Les salicornes s.l. (Salicornia L., Sarcocornia A.J. Scott et Arthrocnemum Moq.) sur les côtes françaises. Bull. Soc. Bot. Centre-Ouest num. spec. 24: 1-122.
34. Lambinon, J. & Duvigneaud, J. 1980. Remarques nomenclaturales à propos de la deuxième édition de la « Nouvelle flore de la Belgique et des régions voisines ». Lejeunia, n.s., 101: 1-56.
35. Leliaert, F., Verbruggen, H., Wysor, B. & De Clerck, O. 2009. DNA taxonomy in morphologically plastic taxa: Algorithmic species delimitation in the Boodlea complex (Chlorophyta: Cladophorales). Molec. Phylogen. Evol. 53: 122-133.
36. Lomonosova, M.N. 2005. Novye vidy semeistva Chenopodiaceae. Bot. Zhurn. 90: 1248-1252.
37. Marshall, E.S. 1908. Salicornia, LINN. P. 33 in: Hanbury, F.J. (ed.), The London Catalogue of British Plants, ed. 10. London: George Bell & Sons.
38. Meikle, R.D. 1957. What is the subspecies? Taxon 6: 102-105.
39. Moss, C.E. 1911. Some species of Salicornia. J. Bot. 49: 177-185.
40. Murakeözy, E.P., Ainouche, A., Meudec, A., Deslandes, E. & Poupart, N. 2007. Phylogenetic relationships and genetic diversity of the Salicorniae (Chenopodiaceae) native to the Atlantic coasts of France. Pl. Syst. Evol. 264: 217-237.
41. Oliver, P.M. & Lee, M.S.Y. 2010. The botanical and zoological codes impede biodiversity research by discouraging publication of unnamed new species. Taxon 59: 1201-1205.
42. Papini, A., Trippanera, G.B., Maggini, F., Filigheddu, R. & Biondi, E. 2004. New insights in Salicornia L. and allied genera (Chenopodiaceae) inferred from nrDNA sequence data. Pl. Biosyst. 138: 215-223.
43. Pavlic, D., Slippers, B., Coutinho, T.A. & Wingfield, M.J. 2009. Multiple gene genealogies and phenotypic data reveal cryptic species of the Botryosphaeriaceae: A case study on the Neofusicoccum parvum/N. ribis complex. Molec. Phylogen. Evol. 51: 259-268.
44. Piirainen, M. 1991. Flora Nordica notes I. Salicornia (Chenopodiaceae) in northern Europe: Typification and taxonomic notes. Ann. Bot. Fenn. 28: 81-85.
45. Piirainen, M. 2001. Salicornia L. Pp. 50-54 in: Jonsell, N. (ed.), Flora Nordica, vol. 2, Chenopodiaceae-Fumariaceae. Stockholm: Bergius Foundation.
46. Piirainen, M. 2009. Salicornia. In: Uotila, P. (ed.), Chenopodiaceae Euro+Med Plantbase-the information resource for Euro-Mediterranean plant diversity. http//ww2.bgbm.org/EuroPlusMed/ (accessed 01 Dec. 2012).
47. Ramaiya, M., Johnson, M., Shaw, B., Heinrichs, J., Hentschel, J., Konrat, M. von, Davison, P. & Shaw, A.J. 2010. Morphologically cryptic biological species within the liverwort, Frullania asagrayana. Amer. J. Bot. 97: 1707-1718.
48. Reynolds D.R. & Taylor, J.W. 1991. DNA specimens and the 'International code of botanical nomenclature'. Taxon 40: 311-315.
49. Rowley, G.D. 2007. Cytotypes: A case for infraspecific names. Taxon 56: 983.
50. Samson, R.A. & Varga, J. 2009. What is a species of Aspergillus? Med. Mycol. 47: S13-S20.
51. Särkinen, T.E., Marcelo-Peña, J.L., Yomona, A.D., Simon, M.F., Pennington, R.T. & Hughes, C.E. 2011. Underestimated endemic species diversity in the dry inter-Andean valley of the Río Marañón, northern Peru: An example from Mimosa (Leguminosae, Mimosoideae). Taxon 60: 139-150.
52. Scott, A.J. 1977. Reinstatement and revision of Salicorniaceae J. Agardh. Bot. J. Linn. Soc. 75: 357-374.
53. Stace, C. 2010. New Flora of the British Isles, ed. 3. Cambridge: Cambridge University Press.
54. Szweykowski, J., Buczkowska, K. & Odrzykoski, I.J. 2005. Conocephalum salebrosum (Marchantiopsida, Conocephalaceae): A new Holarctic liverwort species. Pl. Syst. Evol. 253: 133-158
55. Tan, D.S.H., Ang, Y., Lim, G.S., Bin Ismail, M.R. & Meier, R. 2009. From 'cryptic species' to integrative taxonomy: An iterative process involving DNA sequences, morphology, and behaviour leads to the resurrection of Sepsis pyrrhosoma (Sepsidae: Diptera). Zool. Scripta 39: 51-61.
56. Tautz, D., Arctander, P., Minelli, A., Thomas, R.H. & Vogler, A.P. 2003. A plea for DNA taxonomy. Trends Ecol. Evol. 18: 70-74.
57. Teege, P., Kadereit, J.W. & Kadereit, G. 2011. Tetraploid European Salicornia species are best interpreted as ecotypes of multiple origins. Flora 206: 910-920.
58. Vanderpoorten, A., Hardy, O.J., Lambinon, J. & Raspé, O. 2011. Two reproductively isolated cytotypes and a swarm of highly inbred, disconnected populations: A glimpse into Salicornia's evolutionary history and challenging taxonomy. J. Evol. Biol. 24: 630-644.
59. Vanderpoorten, A., Long, D.G., Schäfer-Verwimp, A. Heinrichs, J. & Devos, N. 2010. The taxonomy of the leafy liverwort genus Leptoscyphus (Lophocoleaceae) revisited. Taxon 59: 176-186.
60. Vondrák, J., Říha, P., Arup, U. & Søchting, U. 2009. The taxonomy of the Caloplaca citrina group (Teloschistaceae) in the Black Sea region; With contributions to the cryptic species concept in lichenology. Lichenologist 41: 571-604.
61. Wilson, E.O. & Brown, W.L., Jr. 1953. The subspecies concept and its taxonomic implications. Syst. Zool. 2: 97-111
62. Woods, J. 1851a. On the various forms of Salicornia. Bot. Gaz. 3: 29-33.
63. Woods, J. 1851b. On the various forms of Salicornia. Proc. Linn. Soc. London 2: 109-113.
64. Zhu, G., Mosyakin, S.L. & Clemants, S.E. 2003. Chenopodiaceae. Pp. 351-414 in: Zhengyi, W., Raven, P.H. & Deyuan, H. (eds.), Flora of China, vol. 5, Ulmaceae through Basellaceae. Beijing: Science Press; St. Louis: Missouri Botanical Garden Press.
65. Zink, R.M. 2004. The role of subspecies in obscuring avian biological diversity and misleading conservation policy. Proc. Roy. Soc. London, Ser. B, Biol. Sci. 271: 561-564.
66. Zomlefer, W.B., Whitten, W.M., Williams, N.H. & Judd, W.S. 2006. Infrageneric phylogeny of Schoenocaulon (Liliales: Melanthiaceae) with clarification of cryptic species based on ITS sequence