New insights in Salicornia L. and allied genera (Chenopodiaceae) inferred from nrDNA sequence data

Plant Biosystems

Volumn 138, Issue 3, 2004, Pages 215-223

  Papini, A ^a   Trippanera, G B ^b   Maggini, F ^b   Filigheddu, R ^c   Biondi, E ^d  

^a UNIVERSITY OF FLORENCE   (Italy)

^b UNIVERSITY OF TUSCIA   (Italy)

^c UNIVERSITY OF SASSARI   (Italy)

^d UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

Author keywords

Arthrocnemum; Chenopodiaceae; ITS; Phylogeny; Salicornia; Sarcocornia

Indexed keywords

ACER PENSYLVANICUM; ALLENROLFEA; AMARANTHACEAE; ARTHROCNEMUM; BASSIA HIRSUTA; BIENERTIA; CAMPHOROSMA MONSPELIACA; CHENOPODIOIDEAE; EMBRYOPHYTA; HALOCNEMUM; HALOCNEMUM STROBILACEUM; KALIDIUM; SALICORNIA; SARCOCORNIA; SUAEDA;

EID: 11444266948     PISSN: 11263504     EISSN: None     Source Type: Journal    
DOI: 10.1080/11263500400006977     Document Type: Article

References (59)

1. Agardh JG. 1858. Theoria Systematis Plantarum. G.W.K. Gleerup, Lund, Switzerland
2. Alvarez I, Wendel JF. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29(3):417-34.
3. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25:3389-402.
4. Al-Turki TA, Filfilan SA, Mehmood SF. 2000. A cytological study of flowering plants from Saudi Arabia. Willdenowia 30:339-58.
5. Andreucci F, Biondi E, Feoli E, Zuccarello V. 2000. Modeling environmental responses of plant associations by fuzzy set theory. Community Ecoll(1):73-80.
6. APG II 2003. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot J Linnean Soc 141(4):399-436
7. Arnheim N, 1983. Concerted evolution in multigene families. In: Nei M, Koehn R. editors, Evolution of genes and proteins. Sunderland: Sinauer. pp 38-61.
8. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Missouri Bot Gard 82:247-77
9. Ball PW. 1964. A taxonomic review of Salicornia in Europe. Feddes Repertorium 69:1-8
10. Ball PW, Akeroyd JR. 1993. Camphorosma. In: Tutin TG, Burges NA, Chater AO, Edmonson JR, Heywood VH, Moore DM, Valentine DH, Walters SM, Webb DA. editors, Flora Europaea 1. Cambridge: Cambridge University Press. p 118.
11. Ball PW. 1993. Arthrocnemum. In: Tutin TG, Burges NA, Chater AO, Edmonson JR, Heywood VH, Moore DM, Valentine DH, Walters SM, Webb DA, editors, Flora Europaea 1. Cambridge: Cambridge University Press. p 121.
12. Ball PW, Tutin TG. 1959. Notes on annual species of Salicornia in Britain. Watsonia 4(4):193-205.
13. Castroviejo S, Lainz M, Lòpez Gonzalez G, Montserrat P, Muñoz Garmendia F, Paiva J, Villar L. editors, 1990. Flora iberica. Plantas vasculares de la Península Ibérica e Islas Baleares. Vol. II [Platanaceae-Plumbaginaceae (partim)]. Real Jard Bot CSIC Madrid.
14. Castroviejo S, Lago E. 1992. Datos acerca de la hibridación en el género Sarcocornia (Chenopodiaceae). Anales del Jardín Botánico de Madrid 50:163-70.
15. Castroviejo S, Valdés B. 1990. Notas sobre las Salicornia L. Ibéricas. Anales del Jardín Botánico de Madrid 47:270.
16. Cristofolini G, Chiapella L. 1970. Chemotassonomia del genere Salicornia delle coste venete. Giorn. Bot. Ital. 104(2):91-115.
17. Cuénoud Ph, Savolainen V, Chatrou LW, Powell M, Grayer RJ, Chase MW. 2002. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. Am J Bot 89:132-44.
18. D'Amato G, Pavesi A. 1990. Numeri cromosomici per la flora Italiana: 1247-1250. Informatore Botanico Italiano 22:244-6.
19. D'Ovidio R. 1992. Nucleotide sequence of a 5,8S rDNA gene and the internal trascribed spacers from Populus deltoides. Plant Mol Biol 19:1069-72.
20. Edmonson JR. 1993. Chenopodiaceae. In: Tutin TG, Burges NA, Chater AO, Edmonson JR, Heywood VH, Moore DM, Valentine DH, Walters SM, Webb DA. editors, Flora Europaea 1, Cambridge: Cambridge University Press. pp 108-130.
21. Farris JS, Källersjö M, Kluge AG, Bult C, 1995. Testing significance of incongruence. Cladistics 10:315-19.
22. Felsenstein J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17:368-76.
23. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-91.
24. Filigheddu R, Farris E, Biondi E. 2000. The vegetation of S'Ena Arrubia lagoon (centre-western Sardinia). Fitosociologia 37(1):39-59.
25. Géhu JM. 1992. Les Salicornes annuelles d'Europe: système taxonomique et essai de clé de détermination. Colloq Phytosoc 18:227-41.
26. Géhu JM, Biondi E. 1992. Végétation du littoral de la Corse. Essai de synthèse phytosociologique. Braun-Blanquetia 13:3-149.
27. Hamby RK, Zimmer EA. 1992. Ribosomal RNA as a phylogenetic tool in plant systematics. In: Soltis PS, Soltis DE, Doyle JJ. editors, Molecular Systematics of Plants. New York: Chapman & Hall. pp 50-90.
28. Hershkovitz MA, Lewis LA. 1996. Deep-level diagnostic value of the rDNA-ITS region. Mol Biol Evol 13:1276-95.
29. Huelsenbeck JP, Crandall KA. 1997. Phylogeny estimation and hypothesis testing using maximum likelihood. Ann. Rev. Ecol. Syst. 28:437-466.
30. Huiskes AH, Schat H, Elenbaas PF. 1985. Cytotaxonomic status and morphological characterisation of Salicornia dolichostachya and Salicornia brachystachya. Acta Botanica Neerlandica 34:271-82.
31. Iberite M. 1996. Contribution to knowledge of the genus Salicornia L. (Chenopodiaceae) in Italy. Ann Bot (Roma) 54:145-54.
32. Jeanmonod D, Burdet HM. 1988. Notes et contributions a la flore du Corse, III. Candollea, 43(1):335-408.
33. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16:111-20
34. Kühn U. 1993. Chenopodiaceae. In: Kubitzki K. editor, The families and genera of vascular plants. Heidelberg: Springer. pp 253-281.
35. Lahondere C, Botineau M, Bouzille J-B. 1992. Les Salicornes annuelles du Centre-Ouest (Vendée, Charente-maritime): taxonomie, morphologie, écologie, phytosociologie, phytogéographie. Coll Phytosoc 18:1-24.
36. Lausi D. 1969. Descrizione di una nuova Salicornia dalla Laguna veneta. Giorn Bot Ital 103:183-8.
37. Li W-H. 1997. Molecular Evolution. Sunderland, USA: Sinauer Associates.
38. Lomonosova MN, Krasnikov AA. 1993. Chromosome numbers in some members of the Chenopodiaceae. Botaniceskij Îurnal (Moscow & Leningrad) 78(3):158-9
39. Luque T. 1985. Números cromosómicos para la flora española. 363-434. Lagascalia 13:293-5.
40. Maddison WP, Maddison DR. 1992. MacClade: analysis of phylogeny and character evolution. Sunderland, USA: Sinauer Associates.
41. Moss CE. 1954. The species of Arthrocnemum and Salicornia in southern Africa. J South African Bot 20:1-22.
42. Pastor J, Valdés B. 1986. Números cromosómicos para la flora Española, 485-490. Lagascalia 14:297-301.
43. Pignatti S. 1982. Flora d'Italia. Vol. 1. Bologna, Italy: Edagricole.
44. Posada D, Crandall A. 1988. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-8.
45. Pyankov VI, Artyusheva EG, Edwards GE, Black Jr. CC, Soltis PS. 2001. Phylogenetic analysis of tribe Salsoleae (Chenopodiaceae) based on ribosomal ITS sequences: implications for the evolution of photosynthesis types. Am J Bot 88(7):1189-98.
46. Queirós M. 1985. Números cromosómicos para a flora Portuguesa. 86-103. Boletim da Sociedade Broteriana 58:85-96. Coimbra, Portugal.
47. Rogers SO, Bendich AJ. 1987. Ribosomal RNA genes in plants: variability in copy number and in intergenic spacer. Plant Mol Biol 9:509-20.
48. Runemark H. 1996. Mediterranean chromosome number reports 6 (590-678). Flora Mediterranea 6:223-43.
49. Saitou N, Nei M. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-25.
50. Scott AJ. 1977. Reinstatement and revision of Salicorniaceae J. Agardh (Caryophyllales). Bot J Linn Soc 75(4):357-74.
51. Shepherd KA, Waycott M, Calladine A. 2004. Radiation of the Australian Salicornioideae (Chenopodiaceae) - based on evidence from nuclear and chloroplast DNA sequences. Amer. Journ. Bot. 91:1387-97.
52. Schütze P, Freitag H, Weising K. 2003. An integrated molecular and morphological study of the subfamily Suaedoideae Ulbr. (Chenopodiaceae). Plant Syst Evol 239:257-86.
53. Simmons MP, Ochoterena H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst Biol 49:369-81.
54. Subramanian D. 1988. Cytological studies of some mangrove flora of Tamilnadu. Cytologia 53:87-92.
55. Swofford DL. 1998. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sunderland, USA: Sinauer Associates.
56. Templeton AR. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221-44.
57. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl Acids Res 22:4673-80.
58. Ward DE, Spellenberg R. 1988. Chromosome counts of angiosperms from New Mexico and adjacent areas. Phytologia, 64:390-98
59. Young ND, Healy J. 2003. GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4(1):6.