Molecular detection and community analysis of arbuscular mycorrhizal fungi in the rhizosphere of Phellodendron amurense

Annals of Microbiology

Volumn 62, Issue 4, 2012, Pages 1769-1777

  Jie, Weiguang ^a   Cai, Baiyan ^b,c   Ge, Jingping ^b,c  

^a East University of Heilongjiang   (China)

^b HEILONGJIANG UNIVERSITY   (China)

^c BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

18S rDNA; Denaturing gradient gel electrophoresis; Nested PCR; Phellodendron amurense.25S rDNA

Indexed keywords

ARBUSCULAR; FUNGI; GLOMUS; GLOMUS INTRARADICES; GLOMUS MOSSEAE; GLOMUS VERSIFORME; HYPONECTRIA BUXI; PHELLODENDRON AMURENSE; SCUTELLOSPORA; SCUTELLOSPORA CALOSPORA;

EID: 84871456714     PISSN: 15904261     EISSN: 18692044     Source Type: Journal    
DOI: 10.1007/s13213-012-0435-6     Document Type: Article

References (29)

1. Bedini S, Avio L, Argese E, Giovannetti M (2007) Effects of long-term land use on arbuscular mycorrhizal fungi and glomalin-related soil protein. Agric Ecosyst Environ 120:463-466 (Pubitemid 46237604)
2. Comejo P, Azcón-Aguilar C, Barea JM, Ferrel N (2004) Temporal temperature gradient gel electrophoresis (TTGE) as a tool for the characterization of arbuscular mycorrhizal fungi. FEMS Microbiol Lett 241:265-270 (Pubitemid 39643005)
3. Daei G, Ardekani MR, Rejali F, Teimuri S, Miransari M (2009) Alleviation of salinity stress on wheat yield, yield components, and nutrient uptake using arbuscular mycorrhizal fungi under field conditions. J Plant Physiol 166(6):617-625
4. Dong XL, Zhao B (2006) Multiplicitas Nested-PCR\A technique of investigate part of arbuscular mycorrhizal fungi and microflora in field trials plants. Sci China 36(1):59-65
5. Grigera MS, Drijber RA, Wienhold BJ (2007) Increased abundance of arbuscular mycorrhizal fungi in soil coincides with the reproductive stages of maize. Soil Biol Biochem 39:1401-1409 (Pubitemid 46629088)
6. Gyuricza V, Declerck S, Boulois HD (2010) Arbuscular mycorrhizal fungi decrease radiocesium accumulation in Medicago truncatula. J Environ Radioact 101(8):591-596
7. Helgason T, Daniell TJ, Husband R, Fitter AH, Yong JPW (1998) Ploughing the word-wide-web? Nature 384:431
8. Jie WG, Cai BY, Ge JP, Yan XF (2007) Identification of arbuscular mycorrhizal fungi of Phellodendron amurense Rupr. Biotechnology 17(6):32-35
9. Kowalchuk GA, De Souza FA, Van Veen JA (2002) Community analysis of arbuscular mycorrhizal fungi associated with Ammo-phila arenaria in Dutch coastal sand dunes. Mol Ecol 11:571-581 (Pubitemid 34234378)
10. Liu RJ, Chen YL (2007) Mycorrhizology. Science Press, Beijing
11. Long LK, Yang SZ, Yao Q, Zhu HH (2005) DNA extraction from arbuscular mycorrhizal fungi and analysis by PCR-denaturing gradient gel electrophoresis. Mycosystema 24(4):564-569
12. Long LK, Yao Q, Guo J, Yang RH, Huang YH, Zhu HH (2010) Molecular community analysis of arbuscular mycorrhizal fungi associated with five selected plant species from heavy metal polluted soils. Eur J Soil Biol 46(5):288-294
13. Louisa RB, Grzyb I, Jeffries P (2009) Shifting the balance from qualitative to quantitative analysis of arbuscular mycorrhizal communities in field soils. Fungal Ecol 2:1-9
14. Ma WK, Siciliano SD, Germida JJ (2005) A PCR-DGGE method for detectingarbuscular mycorrhizalfungi in cultivated soils. Soil Biol Biochem 37(9):1589-1597 (Pubitemid 40817350)
15. Porras-Soriano A, Soriano-Martín ML, Porras-Piedra A, Azcón R (2009) Arbuscular mycorrhizal fungi increased growth, nutrient uptake and tolerance to salinity in olive trees under nursery conditions. J Plant Physiol 166(13):1350-1359
16. Reddy SR, Pindi PK, Reddy SM (2005) Molecular methods for research on arbuscular mycorrhizal fungi in India: problems and prospects. Curr Sci 89:1699-1709 (Pubitemid 43170080)
17. Requena N, Serrano E, Ocón A, Breuninger M (2007) Plant signals and fungal perception during arbuscular mycorrhiza establishment. Phytochemistry 68:33-40 (Pubitemid 44937370)
18. Sakurai M, Suzuki K, Onodera M, Shinano T, Osaki M (2007) Analysis of bacterial communities in soil by PCR-DGGE targeting protease genes. Soil Biol Biochem 39:2777-2784 (Pubitemid 47238906)
19. Schwarzott D, Schüβler A (2001) A simple and reliable method for ssuRNA gene DNA extraction, amplification and cloning from single AM fungal spore. Mycorrhiza 10:203-207 (Pubitemid 32106441)
20. Simon L, Lalonde M, Bruns TD (1992) Specific amplification of l8S fungi ribosomal genes from vesicular arbuscular endomycor-rhizai fungi colonizing roots. Appl Environ Microbiol 58:291-295
21. Taheri WI, Bever JD (2010) Adaptation of plants and arbuscular mycorrhizal fungi to coal tailings in Indiana. Appl Soil Ecol 45 (3):138-143
22. Van Tuinen D, Zhao B, Gianinazzi-Pearson V (1998a) PCR in studies of AM fungi: from primers to application. In: Varma AK (ed) Mycorrhiza manual. Springer, Heidelberg, pp 387-399
23. Van Tuinen D, Jacquot E, Zhao B, Gollotte A, Gianinazzi-Pearson V (1998b) Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA-targeted nested PCR. Mol Ecol 7:879-887 (Pubitemid 28352867)
24. Violi HA, Alejandro F, Wright SF, Esteban EP, Morton JB, John A, Carol J (2008) Disturbance changes arbuscular mycorrhizal fungal phenology and soil glomalin concentrations but not fungal spore composition inmontane rainforests in Veracruz and Chiapas, Mexico. For Ecol Manag 254:276-290
25. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols, a guide to methods and applications. Academic, San Diego, pp 315-322
26. Yeates C, Gilling MR (1998) Methods for microbial DNA extraction from soil for PCR amplification. Biol Proced Online 1:40-47
27. Zarei M, Hempel S, Wubet T, Schäfer T, Savaghebi G, Jouzani GS, Nekouei MK, Buscot F (2010) Molecular diversity of arbuscular mycorrhizal fungi in relation to soil chemical properties and heavy metal contamination. Environ Pollut 158(8):2757-2765
28. Zhao DD, Zhao ZW (2007) Biodiversity of arbuscular mycorrhizal fungi in the hot-dry valley of the Jinsha River, southwest China. Appl Soil Ecol 37:118-128
29. Zheng SX, Dong XL, Yu ZN, Zhao B (2004) Molecular detection of four arbuscular mycorrhizal fungal inocula in field trials. Acta Pedol Sin 41(5):742-749