Transcriptomic analysis of salmonella desiccation resistance

Foodborne Pathogens and Disease

Volumn 9, Issue 12, 2012, Pages 1143-1151

  Li, Haiping ^a   Bhaskara, Anuhya ^b   Megalis, Christina ^a   Tortorello, Mary Lou ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b ILLINOIS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; OTSA PROTEIN; OTSB PROTEIN; TRANSCRIPTOME; TREA PROTEIN; TREB PROTEIN; TREC PROTEIN; TREF PROTEIN; TREHALOSE; TRER PROTEIN; TREY PROTEIN; TREZ PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL SURVIVAL; CARBOHYDRATE METABOLISM; CARBOHYDRATE SYNTHESIS; CELLULAR STRESS RESPONSE; CONTROLLED STUDY; DESICCATION; DESICCATION RESISTANCE; FATTY ACID METABOLISM; FIMBRIA; FLAGELLUM; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; HUMIDITY; MICROARRAY ANALYSIS; MICROBIAL DEGRADATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN SYNTHESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALMONELLA; SALMONELLA TYPHIMURIUM; STRAIN DIFFERENCE; STRESS; TRANSCRIPTOMICS; TRANSPORT AND BINDING PHENOMENA;

BACTERIAL PROTEINS; COMPUTATIONAL BIOLOGY; DESICCATION; FOOD MICROBIOLOGY; GENE EXPRESSION PROFILING; HUMIDITY; MICROBIAL VIABILITY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SALMONELLA TYPHIMURIUM; TRANSCRIPTOME; TREHALOSE;

SALMONELLA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TENNESSEE; SALMONELLA TYPHIMURIUM;

EID: 84871311830     PISSN: 15353141     EISSN: 15567125     Source Type: Journal    
DOI: 10.1089/fpd.2012.1254     Document Type: Article

References (28)

1. Alvarez-Ordóñ ez A, Fernández A, López M, Arenas R, Bernardo A. Modifications in membrane fatty acid composition of Salmonella Typhimurium in response to growth conditions and their effect on heat resistance. Int J Food Microbiol 2008; 123: 212-219.
2. Baldi P, Long AD. A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes. Bioinformatics 2001;17: 509-519.
3. [CDC] Centers for Disease Control and Prevention. Outbreak of Salmonella Serotype Enteritidis Infections Associated with Raw Almonds - United States and Canada, 2003-2004. Atlanta: CDC, 2004, pp. 484-487.
4. [CDC] Centers for Disease Control and Prevention. Multistate outbreak of Salmonella infections associated with peanut butter and peanut butter-containing products - United States, 2008- 2009. MMWR Morb Mortal Wkly Rep 2009;58: 85-90.
5. Chen Y, Freier T, Kuehm J, Moorman M, Scott J, Meyer J, Morille-Hinds T, Post L, Smoot L, Hood L, Shebuski J, Banks J. Control of Salmonella in low-moisture foods. Grocery Manufacturer Association (GMA). 2009. Available at: www.gma online.org/downloads/wygwam/SalmonellaControlGuidance .pdf, accessed October 1, 2012.
6. Crowe JH, Crowe LM, Carpenter JF, Rudolph AS, Wistrom CA, Spargo BJ, Anchordoguy TJ. Interactions of sugars with membranes. Biochim Biophys Acta 1988;947: 367-384.
7. Danyluk MD, Nozawa-Inoue M, Hristova KR, Scow KM, Lampinen B, Harris LJ. Survival and growth of Salmonella Enteritidis PT 30 in almond orchard soils. J Appl Microbiol 2008;104: 1391-1399.
8. Elbein AD, Pan YT, Pastuszak I, Carroll D. New insights on trehalose: A multifunctional molecule. Glycobiology 2003;13: 17R-27R.
9. Garmiri P, Coles KE, Humphrey TJ, Cogan TA. Role of outer membrane lipopolysaccharides in the protection of Salmonella enterica serovar Typhimurium from desiccation damage. FEMS Microbiol Lett 2008;281: 155-159.
10. Gibson DL, White AP, Snyder SD, Martin S, Heiss C, Azadi P, Surette M, Kay WW. Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence. J Bacteriol 2006;188: 7722-7730.
11. Himathongkham S, Nuanualsuwan S, Riemann H. Survival of Salmonella Enteritidis and Salmonella Typhimurium in chicken manure at different levels of water activity. FEMS Microbiol Lett 1999;172: 159-163.
12. Horlacher R, Uhland K, Klein W, Ehrmann M, Boos W. Characterization of a cytoplasmic trehalase of Escherichia coli. J Bacteriol 1996;178: 6250-6257.
13. Huang KC, Meir Y, Wingreen NS. Dynamic structures in Escherichia coli: Spontaneous formation of MinE rings and MinD polar zones. Proc Natl Acad Sci USA 2003;100: 12724-12728.
14. James BW, Mauchline WS, Dennis PJ, Keevil CW, Wait R. Poly- 3-hydroxybutyrate in Legionella pneumophila, an energy source for survival in low-nutrient environments. Appl Environ Microbiol 1999;65: 822-827.
15. Joseph TC, Rajan LA, Thampuran N, James R. Functional characterization of trehalose biosynthesis genes from E. coli: an osmolyte involved in stress tolerance. Mol Biotechnol 2010; 46: 20-25.
16. Kayala MA, Baldi P. Cyber-T web server: Differential analysis of high-throughput data. Nucleic Acids Res 2012;40:W553- W559.
17. Klein W, Horlacher R, Boos W. Molecular analysis of treB encoding the Escherichia coli enzyme II specific for trehalose. J Bacteriol 1995;177: 4043-4052.
18. MacCannell DR, Fields PI, McQuiston JR, Mikoleit ML, Gerner- Smidt PL. Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191, whole genome shotgun sequencing project. GenBank: ACBF00000000.1. Centers for Disease Control and Prevention. 2008. Available at: http://0-www.ncbi.nlm.nih.gov. ilsprod.lib.neu.edu/Traces/wgs/?val =ACBF01, accessed October 5, 2012.
19. Mattick KL, Jorgensen F, Legan JD, Cole MB, Porter J, Lappin- Scott HM, Humphrey TJ. Survival and filamentation of Salmonella enterica serovar enteritidis PT4 and Salmonella enterica serovar Typhimurium DT104 at low water activity. Appl Environ Microbiol 2000;66: 1274-1279.
20. Mattick KL, Phillips LE, Jorgensen F, Lappin-Scott HM, Humphrey TJ. Filament formation by Salmonella spp. inoculated into liquid food matrices at refrigeration temperatures, and growth patterns when warmed. J Food Prot 2003;66: 215-219.
21. McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, Holmes A, Grewal N, Mulvaney E, Ryan E, Sun H, Florea L, Miller W, Stoneking T, Nhan M, Waterston R, Wilson RK. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 2001;413: 852-856.
22. Rothfield L, Justice S, Garcia-Lara J. Bacterial cell division. Annu Rev Genet 1999;33: 423-448.
23. Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J. TM4 microarray software suite. Methods Enzymol 2006;411: 134-193.
24. Suutari M, Laakso S. Microbial fatty acids and thermal adaptation. Crit Rev Microbiol 1994;20: 285-328.
25. [FDA] U.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition. Bacteriological Analytical Manual. Available at: http://www.fda.gov/Food/ScienceResearch/ LaboratoryMethods/ BacteriologicalAnalyticalManualBAM/ default.htm, accessed August 1, 2012.
26. White AP, Gibson DL, Grassl GA, Kay WW, Finlay BB, Vallance BA, Surette MG. Aggregation via the red, dry, and rough morphotype is not a virulence adaptation in Salmonella enterica serovar Typhimurium. Infect Immun 2008;76: 1048-1058.
27. White AP, Gibson DL, Kim W, Kay WW, Surette MG. Thin aggregative fimbriae and cellulose enhance long-term survival and persistence of Salmonella. J Bacteriol 2006;188: 3219-3227.
28. Wilmes-Riesenberg MR, Foster JW, Curtiss R 3rd. An altered rpoS allele contributes to the avirulence of Salmonella Typhimurium LT2. Infect Immun 1997;65: 203-210.