-
1
-
-
79951482450
-
Genomic instability and cancer: an introduction
-
Shen Z, (2011) Genomic instability and cancer: an introduction. J Mol Cell Biol 3: 1-3.
-
(2011)
J Mol Cell Biol
, vol.3
, pp. 1-3
-
-
Shen, Z.1
-
2
-
-
0033012995
-
Gains, losses, and amplifications of genomic materials in primary gastric cancers analyzed by comparative genomic hybridization
-
Sakakura C, Mori T, Sakabe T, Ariyama Y, Shinomiya T, et al. (1999) Gains, losses, and amplifications of genomic materials in primary gastric cancers analyzed by comparative genomic hybridization. Genes Chromosomes Cancer 24: 299-305.
-
(1999)
Genes Chromosomes Cancer
, vol.24
, pp. 299-305
-
-
Sakakura, C.1
Mori, T.2
Sakabe, T.3
Ariyama, Y.4
Shinomiya, T.5
-
3
-
-
0015694748
-
Letter: A new consistent chromosomal abnormality in chronic myelogenous leukaemia identified by quinacrine fluorescence and Giemsa staining
-
Rowley JD, (1973) Letter: A new consistent chromosomal abnormality in chronic myelogenous leukaemia identified by quinacrine fluorescence and Giemsa staining. Nature 243: 290-293.
-
(1973)
Nature
, vol.243
, pp. 290-293
-
-
Rowley, J.D.1
-
4
-
-
0027517374
-
Clinical significance of HER-2/neu oncogene amplification in primary breast cancer. The South Australian Breast Cancer Study Group
-
Seshadri R, Firgaira FA, Horsfall DJ, McCaul K, Setlur V, et al. (1993) Clinical significance of HER-2/neu oncogene amplification in primary breast cancer. The South Australian Breast Cancer Study Group. J Clin Oncol 11: 1936-1942.
-
(1993)
J Clin Oncol
, vol.11
, pp. 1936-1942
-
-
Seshadri, R.1
Firgaira, F.A.2
Horsfall, D.J.3
McCaul, K.4
Setlur, V.5
-
5
-
-
0024565538
-
The significance of oncogene amplification in primary breast cancer
-
Seshadri R, Matthews C, Dobrovic A, Horsfall DJ, (1989) The significance of oncogene amplification in primary breast cancer. Int J Cancer 43: 270-272.
-
(1989)
Int J Cancer
, vol.43
, pp. 270-272
-
-
Seshadri, R.1
Matthews, C.2
Dobrovic, A.3
Horsfall, D.J.4
-
6
-
-
20044375763
-
Array comparative genomic hybridization and its applications in cancer
-
Pinkel D, Albertson DG, (2005) Array comparative genomic hybridization and its applications in cancer. Nat Genet 37Suppl: S11-17.
-
(2005)
Nat Genet
, vol.37
-
-
Pinkel, D.1
Albertson, D.G.2
-
7
-
-
79960888804
-
Inferring causal genomic alterations in breast cancer using gene expression data
-
Tran LM, Zhang B, Zhang Z, Zhang C, Xie T, et al. (2011) Inferring causal genomic alterations in breast cancer using gene expression data. BMC Syst Biol 5: 121.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 121
-
-
Tran, L.M.1
Zhang, B.2
Zhang, Z.3
Zhang, C.4
Xie, T.5
-
8
-
-
43049167326
-
High-resolution copy number and gene expression microarray analyses of head and neck squamous cell carcinoma cell lines of tongue and larynx
-
Jarvinen AK, Autio R, Kilpinen S, Saarela M, Leivo I, et al. (2008) High-resolution copy number and gene expression microarray analyses of head and neck squamous cell carcinoma cell lines of tongue and larynx. Genes Chromosomes Cancer 47: 500-509.
-
(2008)
Genes Chromosomes Cancer
, vol.47
, pp. 500-509
-
-
Jarvinen, A.K.1
Autio, R.2
Kilpinen, S.3
Saarela, M.4
Leivo, I.5
-
9
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
Perou CM, Jeffrey SS, van de Rijn M, Rees CA, Eisen MB, et al. (1999) Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc Natl Acad Sci U S A 96: 9212-9217.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
van de Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
-
10
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS, et al. (2000) Molecular portraits of human breast tumours. Nature 406: 747-752.
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
van de Rijn, M.4
Jeffrey, S.S.5
-
11
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, et al. (2001) Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proceedings of the National Academy of Sciences of the United States of America 98: 10869-10874.
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
-
12
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, et al. (2003) Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A 100: 8418-8423.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 8418-8423
-
-
Sorlie, T.1
Tibshirani, R.2
Parker, J.3
Hastie, T.4
Marron, J.S.5
-
13
-
-
33646874546
-
The molecular portraits of breast tumors are conserved across microarray platforms
-
Hu Z, Fan C, Oh D, Marron JS, He X, et al. (2006) The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 7: 96.
-
(2006)
BMC Genomics
, vol.7
, pp. 96
-
-
Hu, Z.1
Fan, C.2
Oh, D.3
Marron, J.S.4
He, X.5
-
14
-
-
84863722387
-
Basal-like Breast cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival
-
Weigman VJ, Chao HH, Shabalin AA, He X, Parker JS, et al. (2012) Basal-like Breast cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival. Breast Cancer Res Treat.
-
(2012)
Breast Cancer Res Treat
-
-
Weigman, V.J.1
Chao, H.H.2
Shabalin, A.A.3
He, X.4
Parker, J.S.5
-
15
-
-
33748939380
-
Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer
-
Bergamaschi A, Kim YH, Wang P, Sorlie T, Hernandez-Boussard T, et al. (2006) Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer. Genes Chromosomes Cancer 45: 1033-1040.
-
(2006)
Genes Chromosomes Cancer
, vol.45
, pp. 1033-1040
-
-
Bergamaschi, A.1
Kim, Y.H.2
Wang, P.3
Sorlie, T.4
Hernandez-Boussard, T.5
-
16
-
-
37549020704
-
Recurrent gross mutations of the PTEN tumor suppressor gene in breast cancers with deficient DSB repair
-
Saal LH, Gruvberger-Saal SK, Persson C, Lovgren K, Jumppanen M, et al. (2008) Recurrent gross mutations of the PTEN tumor suppressor gene in breast cancers with deficient DSB repair. Nat Genet 40: 102-107.
-
(2008)
Nat Genet
, vol.40
, pp. 102-107
-
-
Saal, L.H.1
Gruvberger-Saal, S.K.2
Persson, C.3
Lovgren, K.4
Jumppanen, M.5
-
17
-
-
84856217925
-
Concurrent loss of the PTEN and RB1 tumor suppressors attenuates RAF dependence in melanomas harboring (V600E)BRAF
-
Xing F, Persaud Y, Pratilas CA, Taylor BS, Janakiraman M, et al. (2012) Concurrent loss of the PTEN and RB1 tumor suppressors attenuates RAF dependence in melanomas harboring (V600E)BRAF. Oncogene 31: 446-457.
-
(2012)
Oncogene
, vol.31
, pp. 446-457
-
-
Xing, F.1
Persaud, Y.2
Pratilas, C.A.3
Taylor, B.S.4
Janakiraman, M.5
-
18
-
-
0027510686
-
Differential isolation of normal luminal mammary epithelial cells and breast cancer cells from primary and metastatic sites using selective media
-
Ethier SP, Mahacek ML, Gullick WJ, Frank TS, Weber BL, (1993) Differential isolation of normal luminal mammary epithelial cells and breast cancer cells from primary and metastatic sites using selective media. Cancer Res 53: 627-635.
-
(1993)
Cancer Res
, vol.53
, pp. 627-635
-
-
Ethier, S.P.1
Mahacek, M.L.2
Gullick, W.J.3
Frank, T.S.4
Weber, B.L.5
-
19
-
-
62449131093
-
Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes
-
Parker JS, Mullins M, Cheang MC, Leung S, Voduc D, et al. (2009) Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes. J Clin Oncol.
-
(2009)
J Clin Oncol
-
-
Parker, J.S.1
Mullins, M.2
Cheang, M.C.3
Leung, S.4
Voduc, D.5
-
20
-
-
0347090327
-
Adjustment of systematic microarray data biases
-
Benito M, Parker J, Du Q, Wu J, Xiang D, et al. (2004) Adjustment of systematic microarray data biases. Bioinformatics 20: 105-114.
-
(2004)
Bioinformatics
, vol.20
, pp. 105-114
-
-
Benito, M.1
Parker, J.2
Du, Q.3
Wu, J.4
Xiang, D.5
-
21
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, et al. (2002) The human genome browser at UCSC. Genome Res 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
22
-
-
78649345104
-
MapSplice: accurate mapping of RNA-seq reads for splice junction discovery
-
Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, et al. (2010) MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic Acids Res 38: e178.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, K.1
Singh, D.2
Zeng, Z.3
Coleman, S.J.4
Huang, Y.5
-
23
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, et al. (2011) Integrative genomics viewer. Nat Biotechnol 29: 24-26.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
-
24
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29: 644-652.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
-
25
-
-
84863304598
-
R: A Language and Environment for Statistical Computing
-
R Development Core Team
-
R Development Core Team (2009) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2009)
Vienna, Austria: R Foundation for Statistical Computing
-
-
-
26
-
-
0142216642
-
Large-scale genomic instability predicts long-term outcome for women with invasive stage I ovarian cancer
-
Kristensen GB, Kildal W, Abeler VM, Kaern J, Vergote I, et al. (2003) Large-scale genomic instability predicts long-term outcome for women with invasive stage I ovarian cancer. Ann Oncol 14: 1494-1500.
-
(2003)
Ann Oncol
, vol.14
, pp. 1494-1500
-
-
Kristensen, G.B.1
Kildal, W.2
Abeler, V.M.3
Kaern, J.4
Vergote, I.5
-
27
-
-
0033996328
-
Randomized study on adjuvant chemotherapy in stage I high-risk ovarian cancer with evaluation of DNA-ploidy as prognostic instrument
-
Trope C, Kaern J, Hogberg T, Abeler V, Hagen B, et al. (2000) Randomized study on adjuvant chemotherapy in stage I high-risk ovarian cancer with evaluation of DNA-ploidy as prognostic instrument. Ann Oncol 11: 281-288.
-
(2000)
Ann Oncol
, vol.11
, pp. 281-288
-
-
Trope, C.1
Kaern, J.2
Hogberg, T.3
Abeler, V.4
Hagen, B.5
-
28
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, et al. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4: P3.
-
(2003)
Genome Biol
, vol.4
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
-
29
-
-
36248962105
-
The Genomic Landscapes of Human Breast and Colorectal Cancers
-
Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, et al. (2007) The Genomic Landscapes of Human Breast and Colorectal Cancers. Science.
-
(2007)
Science
-
-
Wood, L.D.1
Parsons, D.W.2
Jones, S.3
Lin, J.4
Sjoblom, T.5
-
30
-
-
33845191779
-
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
-
Chin K, DeVries S, Fridlyand J, Spellman PT, Roydasgupta R, et al. (2006) Genomic and transcriptional aberrations linked to breast cancer pathophysiologies. Cancer Cell 10: 529-541.
-
(2006)
Cancer Cell
, vol.10
, pp. 529-541
-
-
Chin, K.1
DeVries, S.2
Fridlyand, J.3
Spellman, P.T.4
Roydasgupta, R.5
-
31
-
-
33746382920
-
Chromosome 5 imbalance mapping in breast tumors from BRCA1 and BRCA2 mutation carriers and sporadic breast tumors
-
Johannsdottir HK, Jonsson G, Johannesdottir G, Agnarsson BA, Eerola H, et al. (2006) Chromosome 5 imbalance mapping in breast tumors from BRCA1 and BRCA2 mutation carriers and sporadic breast tumors. Int J Cancer 119: 1052-1060.
-
(2006)
Int J Cancer
, vol.119
, pp. 1052-1060
-
-
Johannsdottir, H.K.1
Jonsson, G.2
Johannesdottir, G.3
Agnarsson, B.A.4
Eerola, H.5
-
32
-
-
78650675585
-
Inositol polyphosphate 4-phosphatase II regulates PI3K/Akt signaling and is lost in human basal-like breast cancers
-
Fedele CG, Ooms LM, Ho M, Vieusseux J, O'Toole SA, et al. (2010) Inositol polyphosphate 4-phosphatase II regulates PI3K/Akt signaling and is lost in human basal-like breast cancers. Proc Natl Acad Sci U S A.
-
(2010)
Proc Natl Acad Sci U S A
-
-
Fedele, C.G.1
Ooms, L.M.2
Ho, M.3
Vieusseux, J.4
O'Toole, S.A.5
-
33
-
-
78049248432
-
Allele-specific copy number analysis of tumors
-
Van Loo P, Nordgard SH, Lingjaerde OC, Russnes HG, Rye IH, et al. (2010) Allele-specific copy number analysis of tumors. Proc Natl Acad Sci U S A.
-
(2010)
Proc Natl Acad Sci U S A.
-
-
Van Loo, P.1
Nordgard, S.H.2
Lingjaerde, O.C.3
Russnes, H.G.4
Rye, I.H.5
-
34
-
-
77955603605
-
Genomic architecture characterizes tumor progression paths and fate in breast cancer patients
-
Russnes HG, Vollan HK, Lingjaerde OC, Krasnitz A, Lundin P, et al. (2010) Genomic architecture characterizes tumor progression paths and fate in breast cancer patients. Sci Transl Med 2: 38ra47.
-
(2010)
Sci Transl Med
, vol.2
-
-
Russnes, H.G.1
Vollan, H.K.2
Lingjaerde, O.C.3
Krasnitz, A.4
Lundin, P.5
-
35
-
-
77951139631
-
Genome remodelling in a basal-like breast cancer metastasis and xenograft
-
Ding L, Ellis MJ, Li S, Larson DE, Chen K, et al. (2010) Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature 464: 999-1005.
-
(2010)
Nature
, vol.464
, pp. 999-1005
-
-
Ding, L.1
Ellis, M.J.2
Li, S.3
Larson, D.E.4
Chen, K.5
-
36
-
-
0035158730
-
A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes
-
Liu HX, Cartegni L, Zhang MQ, Krainer AR, (2001) A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes. Nat Genet 27: 55-58.
-
(2001)
Nat Genet
, vol.27
, pp. 55-58
-
-
Liu, H.X.1
Cartegni, L.2
Zhang, M.Q.3
Krainer, A.R.4
-
37
-
-
0023718118
-
An explanation for the phenotypic differences between patients bearing partial deletions of the DMD locus
-
Monaco AP, Bertelson CJ, Liechti-Gallati S, Moser H, Kunkel LM, (1988) An explanation for the phenotypic differences between patients bearing partial deletions of the DMD locus. Genomics 2: 90-95.
-
(1988)
Genomics
, vol.2
, pp. 90-95
-
-
Monaco, A.P.1
Bertelson, C.J.2
Liechti-Gallati, S.3
Moser, H.4
Kunkel, L.M.5
-
38
-
-
77956364828
-
Rb deletion in mouse mammary progenitors induces luminal-B or basal-like/EMT tumor subtypes depending on p53 status
-
Jiang Z, Deng T, Jones R, Li H, Herschkowitz JI, et al. (2010) Rb deletion in mouse mammary progenitors induces luminal-B or basal-like/EMT tumor subtypes depending on p53 status. J Clin Invest.
-
(2010)
J Clin Invest
-
-
Jiang, Z.1
Deng, T.2
Jones, R.3
Li, H.4
Herschkowitz, J.I.5
-
39
-
-
59449086167
-
The functional loss of the retinoblastoma tumor suppressor is a common event in Basal-like and Luminal B breast carcinomas
-
Herschkowitz JI, He X, Fan C, Perou CM, (2008) The functional loss of the retinoblastoma tumor suppressor is a common event in Basal-like and Luminal B breast carcinomas. Breast Cancer Res 10: R75.
-
(2008)
Breast Cancer Res
, vol.10
-
-
Herschkowitz, J.I.1
He, X.2
Fan, C.3
Perou, C.M.4
-
40
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li R, Zhu H, Ruan J, Qian W, Fang X, et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20: 265-272.
-
(2010)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
-
41
-
-
80051732262
-
Accurate and comprehensive sequencing of personal genomes
-
Ajay SS, Parker SC, Abaan HO, Fajardo KV, Margulies EH, (2011) Accurate and comprehensive sequencing of personal genomes. Genome Res 21: 1498-1505.
-
(2011)
Genome Res
, vol.21
, pp. 1498-1505
-
-
Ajay, S.S.1
Parker, S.C.2
Abaan, H.O.3
Fajardo, K.V.4
Margulies, E.H.5
-
42
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
Integrated genomic analyses of ovarian carcinoma. Nature 474: 609-615.
-
Nature
, vol.474
, pp. 609-615
-
-
-
43
-
-
54549108740
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455: 1061-1068.
-
Nature
, vol.455
, pp. 1061-1068
-
-
|