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Volumn 7, Issue 12, 2012, Pages

Whole Genome Characterization, Phylogenetic and Genome Signature Analysis of Human Pandemic H1N1 Virus in Thailand, 2009-2012

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ADULT; AGED; AMINO ACID SUBSTITUTION; ARTICLE; CHILD; CLADISTICS; EVOLUTION; EVOLUTIONARY ADAPTATION; FEMALE; GENE SEQUENCE; GENOME ANALYSIS; GENOME SIGNATURE ANALYSIS; HUMAN; INFANT; INFLUENZA A (H1N1); INFLUENZA VIRUS A H1N1; M2 GENE; MALE; NA GENE; NONHUMAN; PANDEMIC INFLUENZA; PB1 GENE; PHYLOGENETIC TREE; PHYLOGENY; PRESCHOOL CHILD; SCHOOL CHILD; THAILAND; VIRUS GENE; VIRUS GENOME; VIRUS ISOLATION; VIRUS MUTATION; VIRUS TRANSMISSION; VIRUS VIRULENCE;

EID: 84871234531     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0051275     Document Type: Article
Times cited : (16)

References (31)
  • 1
    • 65249188436 scopus 로고    scopus 로고
    • Swine influenza A (H1N1) infection in two children-Southern California, March-April 2009
    • Centers for Disease Control and Prevention
    • Centers for Disease Control and Prevention (2009) Swine influenza A (H1N1) infection in two children-Southern California, March-April 2009. Morb Mortal Wkly Rep 2009; 58: 400-2.
    • (2009) Morb Mortal Wkly Rep 2009 , vol.58 , pp. 400-402
  • 2
    • 84871229667 scopus 로고    scopus 로고
    • World Health Organization, Available:, Accessed 2012 Jan 22
    • World Health Organization (2009) Pandemic (H1N1) 2009- update 111. Available: http://www.who.int/csr/don/2010_07_30/en/. Accessed 2012 Jan 22.
    • (2009) Pandemic (H1N1) 2009- update 111
  • 3
    • 84871244244 scopus 로고    scopus 로고
    • Thai Ministry of Public Health, Public Health Advice No. 5 Subject: Outbreaks of Influenza A(H1N1)-May 12, 2009. Available:, Accessed 2012 Jan 22
    • Thai Ministry of Public Health (2009) Public Health Advice No. 5 Subject: Outbreaks of Influenza A(H1N1)-May 12, 2009. Available: http://beid.ddc.moph.go.th/th/images/news/mophadvice5eng.doc. Accessed 2012 Jan 22.
    • (2009)
  • 4
    • 67650567209 scopus 로고    scopus 로고
    • April 2009: an outbreak of swine-origin influenza A (H1N1) virus with evidence for human-to-human transmission
    • Naffakh N, van der Werf S, (2009) April 2009: an outbreak of swine-origin influenza A (H1N1) virus with evidence for human-to-human transmission. Microbes Infect 11: 725-728.
    • (2009) Microbes Infect , vol.11 , pp. 725-728
    • Naffakh, N.1    van der Werf, S.2
  • 6
    • 67649227029 scopus 로고    scopus 로고
    • Emergence of a novel swine-origin influenza A virus (S-OIV) H1N1 virus in humans
    • Peiris JS, Poon LL, Guan Y, (2009) Emergence of a novel swine-origin influenza A virus (S-OIV) H1N1 virus in humans. J Clin Virol 45: 169-173.
    • (2009) J Clin Virol , vol.45 , pp. 169-173
    • Peiris, J.S.1    Poon, L.L.2    Guan, Y.3
  • 7
    • 67650407532 scopus 로고    scopus 로고
    • Antigenic and genetic characteristics of swine-origin 2009 A (H1N1) Influenza viruses circulating in humans
    • Garten RJ, Davis CT, Russell CA, Shu B, Lindstrom S, et al. (2009) Antigenic and genetic characteristics of swine-origin 2009 A (H1N1) Influenza viruses circulating in humans. Science 325: 196-201.
    • (2009) Science , vol.325 , pp. 196-201
    • Garten, R.J.1    Davis, C.T.2    Russell, C.A.3    Shu, B.4    Lindstrom, S.5
  • 8
    • 77954454248 scopus 로고    scopus 로고
    • Novel swine influenza virus reassortants in pigs, China
    • Bi YH, Fu GH, Peng JS, Sun YP, Wang JG, et al. (2010) Novel swine influenza virus reassortants in pigs, China. Emerg Infect Dis 16: 1162-1164.
    • (2010) Emerg Infect Dis , vol.16 , pp. 1162-1164
    • Bi, Y.H.1    Fu, G.H.2    Peng, J.S.3    Sun, Y.P.4    Wang, J.G.5
  • 9
    • 67449152290 scopus 로고    scopus 로고
    • Triple-reassortant swine influenza A (H1) in humans in the United States, 2005-2009
    • Shinde V, Bridges CB, Uyeki TM, Shu B, Balish A, et al. (2009) Triple-reassortant swine influenza A (H1) in humans in the United States, 2005-2009. N Engl J Med 360: 2616-2625.
    • (2009) N Engl J Med , vol.360 , pp. 2616-2625
    • Shinde, V.1    Bridges, C.B.2    Uyeki, T.M.3    Shu, B.4    Balish, A.5
  • 10
    • 67649538978 scopus 로고    scopus 로고
    • Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
    • Smith GJD, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, et al. (2009) Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459: 1122-1126.
    • (2009) Nature , vol.459 , pp. 1122-1126
    • Smith, G.J.D.1    Vijaykrishna, D.2    Bahl, J.3    Lycett, S.J.4    Worobey, M.5
  • 11
    • 73949149480 scopus 로고    scopus 로고
    • Genomic signatures of influenza A Pandemic (H1N1) 2009 virus
    • Chen GW, Shih SR, (2009) Genomic signatures of influenza A Pandemic (H1N1) 2009 virus. Emerg Infect Dis 15: 1897-1903.
    • (2009) Emerg Infect Dis , vol.15 , pp. 1897-1903
    • Chen, G.W.1    Shih, S.R.2
  • 12
    • 77949678181 scopus 로고    scopus 로고
    • Genomic signature and Mutation trend analysis of pandemic (H1N1) 2009 influenza A virus
    • Pan C, Cheung B, Tan S, Li C, Li L, et al. (2010) Genomic signature and Mutation trend analysis of pandemic (H1N1) 2009 influenza A virus. Plos One 5 (3):: e9549.
    • (2010) Plos One , vol.5 , Issue.3
    • Pan, C.1    Cheung, B.2    Tan, S.3    Li, C.4    Li, L.5
  • 13
    • 78049510495 scopus 로고    scopus 로고
    • Molecular characteristics of human pandemic influenza A virus (H1N1)
    • Payungporn S, Panjaworayan N, Makkoch J, Poovorawan Y, (2010) Molecular characteristics of human pandemic influenza A virus (H1N1). Acta Virol 54: 155-163.
    • (2010) Acta Virol , vol.54 , pp. 155-163
    • Payungporn, S.1    Panjaworayan, N.2    Makkoch, J.3    Poovorawan, Y.4
  • 15
    • 79952140131 scopus 로고    scopus 로고
    • The early diversification of influenza A/H1N1pdm
    • Nelson M, Spiro D, Wentworth D, Beck E, Fan J, et al. (2009) The early diversification of influenza A/H1N1pdm. Plos Curr 3 (1):: RRN1126.
    • (2009) Plos Curr , vol.3 , Issue.1
    • Nelson, M.1    Spiro, D.2    Wentworth, D.3    Beck, E.4    Fan, J.5
  • 16
    • 77955237980 scopus 로고    scopus 로고
    • Genetic Characterization of the influenza A pandemic (H1N1) 2009 virus isolates from India
    • Potdar V, Chadha MS, Jadhav SM, Mullick J, Cherian SS, Mishra AC, (2010) Genetic Characterization of the influenza A pandemic (H1N1) 2009 virus isolates from India. Plos One 5 (3):: e9693.
    • (2010) Plos One , vol.5 , Issue.3
    • Potdar, V.1    Chadha, M.S.2    Jadhav, S.M.3    Mullick, J.4    Cherian, S.S.5    Mishra, A.C.6
  • 17
    • 84983726640 scopus 로고    scopus 로고
    • New variants and age shift to high fatality groups contribute to severe successive waves in the 2009 influenza pandemic in Taiwan
    • Yang JR, Huang YP, Chang FY, Hsu LC, Lin YC, et al. (2011) New variants and age shift to high fatality groups contribute to severe successive waves in the 2009 influenza pandemic in Taiwan. Plos One 6 (11):: e28288.
    • (2011) Plos One , vol.6 , Issue.11
    • Yang, J.R.1    Huang, Y.P.2    Chang, F.Y.3    Hsu, L.C.4    Lin, Y.C.5
  • 18
    • 79551573073 scopus 로고    scopus 로고
    • Molecular characterization and comparative analysis of pandemic H1N1/2009 strains with co-circulating seasonal H1N1/2009 strains from eastern India
    • Sarkar M, Agrawal AS, Dey RS, Chattopadhyay S, Mullick R, et al. (2010) Molecular characterization and comparative analysis of pandemic H1N1/2009 strains with co-circulating seasonal H1N1/2009 strains from eastern India. Arch Virol 156: 207-217.
    • (2010) Arch Virol , vol.156 , pp. 207-217
    • Sarkar, M.1    Agrawal, A.S.2    Dey, R.S.3    Chattopadhyay, S.4    Mullick, R.5
  • 19
    • 84855228758 scopus 로고    scopus 로고
    • Genetic characteristics of 2009 pandemic H1N1 influenza viruses isolated from mainland China
    • Zhao JR, Li YD, Pan YM, Zhu N, Ni HX, et al. (2011) Genetic characteristics of 2009 pandemic H1N1 influenza viruses isolated from mainland China. Virol Sin 26: 418-427.
    • (2011) Virol Sin , vol.26 , pp. 418-427
    • Zhao, J.R.1    Li, Y.D.2    Pan, Y.M.3    Zhu, N.4    Ni, H.X.5
  • 20
    • 84871233910 scopus 로고    scopus 로고
    • Thai Meteorological Department, Available:, Accessed 2012 May 16
    • Thai Meteorological Department (2012) Thailand annual weather summary 2010-2011-February 6, 2012. Available: http://www.tmd.go.th/en/climate.php?FileID=4. Accessed 2012 May 16.
    • (2012) Thailand annual weather summary 2010-2011-February 6, 2012
  • 21
    • 34547574886 scopus 로고    scopus 로고
    • Molecular and antigenic evolution and geographical spread of H5N1 highly pathogenic avian influenza virus in western Africa
    • Ducatez MF, Olinger CM, Owoade AA, Tarnagda Z, Tahita MC, et al. (2007) Molecular and antigenic evolution and geographical spread of H5N1 highly pathogenic avian influenza virus in western Africa. J Gen Virol 88: 2297-2306.
    • (2007) J Gen Virol , vol.88 , pp. 2297-2306
    • Ducatez, M.F.1    Olinger, C.M.2    Owoade, A.A.3    Tarnagda, Z.4    Tahita, M.C.5
  • 22
    • 85056046299 scopus 로고    scopus 로고
    • Genome stability of pandemic influenza A (H1N1) 2009 based on analysis of hemagglutinin and neuraminidase gene
    • Espinola EE, (2012) Genome stability of pandemic influenza A (H1N1) 2009 based on analysis of hemagglutinin and neuraminidase gene. Open Virol J 6: 59-63.
    • (2012) Open Virol J , vol.6 , pp. 59-63
    • Espinola, E.E.1
  • 24
    • 0034701740 scopus 로고    scopus 로고
    • Evolution of avian influenza viruses
    • Suarez DL, (2000) Evolution of avian influenza viruses. Vet Microbiol 74: 15-27.
    • (2000) Vet Microbiol , vol.74 , pp. 15-27
    • Suarez, D.L.1
  • 25
    • 77951165843 scopus 로고    scopus 로고
    • Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus
    • Xu R, Ekiert DC, Krause JC, Hai R, Crowe JE Jr, et al. (2010) Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus. Science 328 (5976):: 357-360.
    • (2010) Science , vol.328 , Issue.5976 , pp. 357-360
    • Xu, R.1    Ekiert, D.C.2    Krause, J.C.3    Hai, R.4    Crowe Jr., J.E.5
  • 27
    • 76749149085 scopus 로고    scopus 로고
    • Novel H1N1 2009 influenza virus infection in Bangkok, Thailand: effects of school closures
    • Chieochansin T, Makkoch J, Suwannakarn K, Payungporn S, Poovorawan Y, (2009) Novel H1N1 2009 influenza virus infection in Bangkok, Thailand: effects of school closures. Asian Biomed 3: 469-475.
    • (2009) Asian Biomed , vol.3 , pp. 469-475
    • Chieochansin, T.1    Makkoch, J.2    Suwannakarn, K.3    Payungporn, S.4    Poovorawan, Y.5
  • 28
    • 0035559445 scopus 로고    scopus 로고
    • Universal primer set for the full-length amplification of all influenza A viruses
    • Hoffmann E, Stech J, Guan Y, Webster RG, Perez DR, (2001) Universal primer set for the full-length amplification of all influenza A viruses. Arch Virol 146: 2275-2289.
    • (2001) Arch Virol , vol.146 , pp. 2275-2289
    • Hoffmann, E.1    Stech, J.2    Guan, Y.3    Webster, R.G.4    Perez, D.R.5
  • 29
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 10: 2731-9.
    • (2011) Mol Biol Evol , vol.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 31
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214-221.
    • (2007) BMC Evol Biol , vol.7 , pp. 214-221
    • Drummond, A.J.1    Rambaut, A.2


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