Origin and evolution of Chrysobalanaceae: Insights into the evolution of plants in the Neotropics

Botanical Journal of the Linnean Society

Volumn 171, Issue 1, 2013, Pages 19-37

  Bardon, Léa ^a   Chamagne, Juliette ^a,b   Dexter, Kyle G ^a,c   Sothers, Cynthia A ^d   Prance, Ghillean T ^d   Chave, Jérôme ^a  

^a CNRS   (France)

^b UNIVERSITY OF ZURICH   (Switzerland)

^c ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^d ROYAL BOTANIC GARDENS   (United Kingdom)

Author keywords

Ancestral state reconstruction; Diversification rates; Fossil calibration; Neotropical plant biodiversity; Phylogeny

Indexed keywords

BIOMARKER; CALIBRATION; DICOTYLEDON; DISPERSAL; DIVERGENCE; EXTINCTION; FOSSIL RECORD; GENETIC ANALYSIS; MAXIMUM LIKELIHOOD ANALYSIS; NEOTROPICAL REGION; PHYLOGENETICS; PHYLOGENY; PLASTID; RECONSTRUCTION; SPECIATION (BIOLOGY); SPECIES DIVERSITY; WOODY PLANT;

AMAZONIA; ANDES;

CHRYSOBALANACEAE; MYA;

EID: 84871221627     PISSN: 00244074     EISSN: 10958339     Source Type: Journal    
DOI: 10.1111/j.1095-8339.2012.01289.x     Document Type: Article

References (57)

1. Antonelli A, Nylander JAA, Persson C, Sanmartin I. 2009. Tracing the impact of the Andean uplift on Neotropical plant evolution. Proceedings of the National Academy of Sciences of the United States of America 24: 9749-9754.
2. APG III. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161: 105-121.
3. Bennett KD. 2004. Continuing the debate on the role of Quaternary environmental change for macroevolution. Philosophical Transactions of the Royal Society B: Biological Sciences 359: 295-303.
4. Britton T, Anderson C, Jacquet D, Lundqvist S, Bremer K. 2007. Estimating divergence times in large phylogenetic trees. Systematic Biology 56: 741-752.
5. Burnham RJ, Graham A. 1999. The history of Neotropical vegetation: new developments and status. Annals of the Missouri Botanical Garden 86: 546-589.
6. Davis CC, Webb CO, Wurdack KJ, Jaramillo CA, Donoghue MJ. 2005. Explosive radiation of Malpighiales supports a Mid-Cretaceous origin of modern tropical rain forests. The American Naturalist 3: E36-E65.
7. Davis CC, Wurdack KJ. 2004. Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales. Science 305: 676-678.
8. Dick CW, Abdul-Salim K, Bermingham E. 2003. Molecular systematic analysis reveals cryptic tertiary diversification of a widespread tropical rain forest tree. The American Naturalist 162: 691-703.
9. Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
10. Duarte L, Mello Filha M. 1980. Florula Cenozoica de Gandarela, Minas Gerais. Anais Academia Brasilera de Ciencias 52: 77-91.
11. Dunning LT, Savolainen V. 2010. Broad-scale amplification of matK for DNA barcoding plants, a technical note. Botanical Journal of the Linnean Society 164: 1-9.
12. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
13. Erkens RHJ, Maas JW, Couvreur TLP. 2009. From Africa via Europe to South America: migrational route of a species-rich genus of Neotropical lowland rain forest trees (Guatteria, Annonaceae). Journal of Biogeography 36: 2338-2352.
14. Fine PVA, Ree RH. 2006. Evidence for a time-integrated species-area effect on the latitudinal gradient in tree diversity. The American Naturalist 168: 796-804.
15. FitzJohn RG, Maddison WP, Otto SP. 2009. Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. Systematic Biology 58: 595-611.
16. Gentry AH. 1982. Neotropical floristic diversity: phytogeographical connections between Central and South America, Pleistocene climatic fluctuations, or an accident of the Andean orogeny? Annals of the Missouri Botanical Garden 69: 557-593.
17. Goodall-Copestake WP, Pérez-Espona S, Harris DJ, Hollingsworth PM. 2010. The early evolution of the mega-diverse genus Begonia (Begoniaceae) inferred from organelle DNA phylogenies. Biological Journal of the Linnean Society 101: 243-250.
18. Gouy M, Guindon S, Gascuel O. 2010. Seaview version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221-224.
19. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307-321.
20. Haffer J. 1969. Speciation in Amazonian forest birds. Science 165: 131-137.
21. Hamilton MB. 1998. Four primers pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Molecular Ecology 8: 513-525.
22. Ho SYW. 2007. Calibrating molecular estimates of substitution rates and divergence times in birds. Journal of Avian Biology 38: 409-414.
23. Hoorn C, Wesselingh FP, ter Steege H, Bermudez MA, Mora A, Sevink J, Sanmartín I, Sanchez-Meseguer A, Anderson CL, Figueiredo JP, Jaramillo C, Riff D, Negri FR, Hooghiemstra H, Lundberg J, Stadler T, Särkinen T, Antonelli A. 2010. Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity. Science 330: 927-931.
24. Hopkins MJG. 2007. Modelling the known and unknown plant biodiversity of the Amazon Basin. Journal of Biogeography 34: 1400-1411.
25. Iturralde-Vinent MA, MacPhee RDE. 1999. Paleogeography of the Caribbean region: implications for Cenozoic biogeography. Bulletin of the American Museum of Natural History 238: 3-90.
26. Li M, Wundera J, Bissolia G, Scarponia E, Gazzania S, Barbaroa E, Saedlera H, Varottoa C. 2008. Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species. Cladistics 24: 1-19.
27. Linder HP. 2008. Plant species radiations: where, when, why? Philosophical Transactions of the Royal Society B: Biological Sciences 363: 3097-3105.
28. Maddison WP, Midford PE, Otto SP. 2007. Estimating a binary character's effect on speciation and extinction. Systematic Biology 56: 701-710.
29. Manchester SR. 1999. Biogeographical relationships of North American Tertiary floras. Annals of the Missouri Botanical Garden 86: 472-522.
30. Matthews ML, Endress PK. 2008. Comparative floral structure and systematics in Chrysobalanaceae s.l. (Chrysobalanaceae, Dichapetalaceae, Euphroniaceae, Trigoniaceae; Malpighiales). Botanical Journal of the Linnean Society 157: 249-309.
31. Moore BR, Donoghue MJ. 2007. Correlates of diversification in the plant clade Dipsacales: geographic movement and evolutionary innovations. The American Naturalist 170 (suppl): S28-S55.
32. Morley RJ. 2000. Origin and evolution of tropical rain forests. New York: Wiley.
33. Morley RJ. 2003. Interplate dispersal paths for megathermal angiosperms. Perspectives in Plant Ecology, Evolution and Systematics 6: 5-20.
34. Pennington RT, Dick CW. 2004. The role of immigrants in the assembly of the South American rainforest tree flora. Philosophical Transactions of the Royal Society B: Biological Sciences 359: 1611-1622.
35. Platnick NI, Griswold CE, Coddington JA. 1991. On missing entries in cladistic analysis. Cladistics 7: 337-343.
36. Potter PE, Szatmari P. 2009. Global Miocene tectonics and the modern world. Earth-Science Reviews 96: 279-295.
37. Prance GT. 1972. Flora neotropica. Chrysobalanaceae. New York: Hafner Publishing Company.
38. Prance GT. 1974. Phytogeographic support for the theory of Pleistocene forest refuges in the Amazon Basin, based on evidence from distribution patterns in Caryocaraceae, Chrysobalanaceae, Dichapetalaceae and Lecythidaceae. Acta Amazonica 3: 5-28.
39. Prance GT, Sothers CA. 2003. Chrysobalanaceae 1 & 2, species plantarum: flora of the world, parts 9 &10. Canberra: Australian Biological Resources Study.
40. Prance GT, White F. 1988. The genera of Chrysobalanaceae: a study in practical and theoretical taxonomy and its relevance to evolutionary biology. Philosophical Transactions of the Royal Society B: Biological Sciences 320: 1-184.
41. R Development Core Team. 2009. R: a language and environment for statistical computing. Vienna: R foundation for Statistical Computing.
42. Raven PH, Axelrod DI. 1974. Angiosperm biogeography and past continental movements. Annals of the Missouri Botanical Garden 61: 539-673.
43. Renner SS. 2004. Plant dispersal across the tropical Atlantic by wind and sea currents. International Journal of Plant Sciences 165: S23-S33.
44. Renner SS, Clausing G, Meyer K. 2001. Historical biogeography of Melastomataceae: the role of Tertiary migration and long-distance dispersal. American Journal of Botany 88: 1290-1300.
45. Richardson JE, Pennington RT, Pennington TD, Hollingsworth PM. 2001. Rapid diversification of a species-rich genus of Neotropical rain forest trees. Science 293: 2242-2245.
46. Sanmartin I, Enghoff H, Ronquist F. 2001. Patterns of animal dispersal, vicariance and diversification in the Holarctic. Biological Journal of the Linnean Society 73: 345-390.
47. Savolainen V, Chase MW, Hoot SB, Morton CM, Soltis DE, Bayer C, Fay MF, De Bruijn AY, Sullivan S, Qiu Y-L. 2000. Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences. Systematic Biology 49: 306-362.
48. Shaw J, Lickey EB, Schilling EE, Small RL. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275-288.
49. Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML websServers. Systematic Biology 57: 758-771.
50. Stebbins GL. 1974. Flowering plants: evolution above the species level. Cambridge, MA: Harvard University Press.
51. Strand AE, Leebens-Mack J, Milligan BG. 1997. Nuclear DNA-based markers for plant evolutionary biology. Molecular Ecology 6: 113-118.
52. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599.
53. Tiffney BH. 1985. The Eocene North Atlantic Land Bridge: its importance in Tertiary and modern phytogeography of the northern hemisphere. Journal of the Arnold Arboretum 66: 243-273.
54. Tiffney BH, Fleagle JG, Brown TM. 1994. Early to Middle Miocene angiosperm fruits and seeds from Fejej, Ethiopia. Tertiary Research 15: 25-42.
55. Wijninga VM. 1996. Neogene ecology of the Salto de Tequendama site (2475m altitude, Cordillera Oriental, Colombia): the paleobotanical record of montane and lowland forests. Review of Palaeobotany and Palynology 92: 97-156.
56. Wodehouse RP. 1932. Tertiary pollen. I. Pollen of the living representatives of the Green River Flora. Bulletin of the Torrey Botanical Club 59: 313-340.
57. Yakandawala D, Morton CM, Prance GT. 2010. Phylogenetic relationships of the Chrysobalanaceae inferred from chloroplast, nuclear, and morphological data. Annals of the Missouri Botanical Garden 97: 259-281.