-
1
-
-
34250205544
-
The protean nature of cells in the B lymphocyte lineage
-
Hardy, R. R., Kincade, P. W. and Dorshkind, K. (2007) The protean nature of cells in the B lymphocyte lineage. Immunity, 26, 703-714.
-
(2007)
Immunity
, vol.26
, pp. 703-714
-
-
Hardy, R.R.1
Kincade, P.W.2
Dorshkind, K.3
-
2
-
-
38549147656
-
Evolving views on the genealogy of B cells
-
Welner, R. S., Pelayo, R. and Kincade, P. W. (2008) Evolving views on the genealogy of B cells. Nat. Rev. Immunol., 8, 95-106.
-
(2008)
Nat. Rev. Immunol
, vol.8
, pp. 95-106
-
-
Welner, R.S.1
Pelayo, R.2
Kincade, P.W.3
-
3
-
-
77951254240
-
From hematopoietic progenitors to B cells: Mechanisms of lineage restriction and commitment
-
Ramirez, J., Lukin, K. and Hagman, J. (2010) From hematopoietic progenitors to B cells: mechanisms of lineage restriction and commitment. Curr. Opin. Immunol., 22, 177-184.
-
(2010)
Curr. Opin. Immunol
, vol.22
, pp. 177-184
-
-
Ramirez, J.1
Lukin, K.2
Hagman, J.3
-
4
-
-
79953070487
-
Molecular resolution of the B cell landscape
-
Santos, P. M. and Borghesi, L. (2011) Molecular resolution of the B cell landscape. Curr. Opin. Immunol., 23, 163-170.
-
(2011)
Curr. Opin. Immunol
, vol.23
, pp. 163-170
-
-
Santos, P.M.1
Borghesi, L.2
-
5
-
-
2542442633
-
Transcriptional control of early B cell development
-
Busslinger, M. (2004) Transcriptional control of early B cell development. Annu. Rev. Immunol., 22, 55-79.
-
(2004)
Annu. Rev. Immunol
, vol.22
, pp. 55-79
-
-
Busslinger, M.1
-
6
-
-
82555190932
-
Factors and networks that underpin early hematopoiesis
-
Mercer, E. M., Lin, Y. C. and Murre, C. (2011) Factors and networks that underpin early hematopoiesis. Semin. Immunol., 23, 317-325.
-
(2011)
Semin. Immunol
, vol.23
, pp. 317-325
-
-
Mercer, E.M.1
Lin, Y.C.2
Murre, C.3
-
7
-
-
70350028850
-
Mammalian cytosine methylation at a glance
-
Ooi, S. K., O'Donnell, A. H. and Bestor, T. H. (2009) Mammalian cytosine methylation at a glance. J. Cell Sci., 122, 2787-2791.
-
(2009)
J. Cell Sci
, vol.122
, pp. 2787-2791
-
-
Ooi, S.K.1
O'Donnell, A.H.2
Bestor, T.H.3
-
8
-
-
79960893287
-
Transcriptional regulation by DNA methylation
-
Poetsch, A. R. and Plass, C. (2011) Transcriptional regulation by DNA methylation. Cancer Treat. Rev., 37(Suppl. 1), S8-S12.
-
(2011)
Cancer Treat. Rev
, vol.37
, Issue.SUPPL. 1
-
-
Poetsch, A.R.1
Plass, C.2
-
9
-
-
33847663874
-
Epigenetic regulation of Nanog gene in embryonic stem and trophoblast stem cells
-
Hattori, N., Imao, Y., Nishino, K., Ohgane, J., Yagi, S., Tanaka, S. and Shiota, K. (2007) Epigenetic regulation of Nanog gene in embryonic stem and trophoblast stem cells. Genes Cells, 12, 387-396.
-
(2007)
Genes Cells
, vol.12
, pp. 387-396
-
-
Hattori, N.1
Imao, Y.2
Nishino, K.3
Ohgane, J.4
Yagi, S.5
Tanaka, S.6
Shiota, K.7
-
10
-
-
2342437315
-
Epigenetic control of mouse Oct-4 gene expression in embryonic stem cells and trophoblast stem cells
-
Hattori, N., Nishino, K., Ko, Y. G., Ohgane, J., Tanaka, S. and Shiota, K. (2004) Epigenetic control of mouse Oct-4 gene expression in embryonic stem cells and trophoblast stem cells. J. Biol. Chem., 279, 17063-17069.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 17063-17069
-
-
Hattori, N.1
Nishino, K.2
Ko, Y.G.3
Ohgane, J.4
Tanaka, S.5
Shiota, K.6
-
11
-
-
84855292213
-
A promoter DNA demethylation landscape of human hematopoietic differentiation
-
Calvanese, V., Fernandez, A. F., Urdinguio, R. G., Suarez-Alvarez, B., Mangas, C., Perez-Garcia, V., Bueno, C., Montes, R., Ramos-Mejia, V., Martinez-Camblor, P. et al. (2012) A promoter DNA demethylation landscape of human hematopoietic differentiation. Nucleic Acids Res., 40, 116-131.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 116-131
-
-
Calvanese, V.1
Fernandez, A.F.2
Urdinguio, R.G.3
Suarez-Alvarez, B.4
Mangas, C.5
Perez-Garcia, V.6
Bueno, C.7
Montes, R.8
Ramos-Mejia, V.9
Martinez-Camblor, P.10
-
12
-
-
0034076428
-
Fetal bone marrow as a source of stem cells for in utero or postnatal transplantation
-
Golfier, F., Barcena, A., Harrison, M. R. and Muench, M. O. (2000) Fetal bone marrow as a source of stem cells for in utero or postnatal transplantation. Br. J. Haematol., 109, 173-181.
-
(2000)
Br. J. Haematol
, vol.109
, pp. 173-181
-
-
Golfier, F.1
Barcena, A.2
Harrison, M.R.3
Muench, M.O.4
-
13
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry, R. A., Bolstad, B. M., Collin, F., Cope, L. M., Hobbs, B. and Speed, T. P. (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res., 31, e15.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
14
-
-
42049085369
-
Differentially expressed genes are marked by histone 3 lysine 9 trimethylation in human cancer cells
-
Wiencke, J. K., Zheng, S., Morrison, Z. and Yeh, R. F. (2008) Differentially expressed genes are marked by histone 3 lysine 9 trimethylation in human cancer cells. Oncogene, 27, 2412-2421.
-
(2008)
Oncogene
, vol.27
, pp. 2412-2421
-
-
Wiencke, J.K.1
Zheng, S.2
Morrison, Z.3
Yeh, R.F.4
-
15
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article 3
-
Smyth, G. K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, Article 3, pp. 1-26.
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
, pp. 1-26
-
-
Smyth, G.K.1
-
16
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B (Methodological), 57, 289-300.
-
(1995)
J. Roy. Stat. Soc. B (Methodological
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
17
-
-
77950529946
-
Motif Enrichment Analysis: A unified framework and an evaluation on ChIP data
-
McLeay, R. C. and Bailey, T. L. (2010) Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data. BMC Bioinform., 11, 165.
-
(2010)
BMC Bioinform
, vol.11
, pp. 165
-
-
McLeay, R.C.1
Bailey, T.L.2
-
18
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T. and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-39.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol
, vol.2
, pp. 28-39
-
-
Bailey, T.1
Elkan, C.2
-
19
-
-
77954504873
-
Conserved role of intragenic DNA methylation in regulating alternative promoters
-
Maunakea, A. K., Nagarajan, R. P., Bilenky, M., Ballinger, T. J., D'Souza, C., Fouse, S. D., Johnson, B. E., Hong, C., Nielsen, C., Zhao, Y. et al. (2010) Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature, 466, 253-257.
-
(2010)
Nature
, vol.466
, pp. 253-257
-
-
Maunakea, A.K.1
Nagarajan, R.P.2
Bilenky, M.3
Ballinger, T.J.4
D'Souza, C.5
Fouse, S.D.6
Johnson, B.E.7
Hong, C.8
Nielsen, C.9
Zhao, Y.10
-
20
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigo, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E. et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
-
21
-
-
0032890965
-
The DNA methylation paradox
-
Jones, P. A. (1999) The DNA methylation paradox. Trends Genet., 15, 34-37.
-
(1999)
Trends Genet
, vol.15
, pp. 34-37
-
-
Jones, P.A.1
-
22
-
-
50649108994
-
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
-
Rakyan, V. K., Down, T. A., Thorne, N. P., Flicek, P., Kulesha, E., Graf, S., Tomazou, E. M., Backdahl, L., Johnson, N., Herberth, M. et al. (2008) An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). Genome Res., 18, 1518-1529.
-
(2008)
Genome Res
, vol.18
, pp. 1518-1529
-
-
Rakyan, V.K.1
Down, T.A.2
Thorne, N.P.3
Flicek, P.4
Kulesha, E.5
Graf, S.6
Tomazou, E.M.7
Backdahl, L.8
Johnson, N.9
Herberth, M.10
-
23
-
-
64449088814
-
Stepwise activation of enhancer and promoter regions of the B cell commitment gene Pax5 in early lymphopoiesis
-
Decker, T., Pasca di Magliano, M., McManus, S., Sun, Q., Bonifer, C., Tagoh, H. and Busslinger, M. (2009) Stepwise activation of enhancer and promoter regions of the B cell commitment gene Pax5 in early lymphopoiesis. Immunity, 30, 508-520.
-
(2009)
Immunity
, vol.30
, pp. 508-520
-
-
Decker, T.1
Pasca Di Magliano, M.2
McManus, S.3
Sun, Q.4
Bonifer, C.5
Tagoh, H.6
Busslinger, M.7
-
24
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball, M. P., Li, J. B., Gao, Y., Lee, J. H., LeProust, E. M., Park, I. H., Xie, B., Daley, G. Q. and Church, G. M. (2009) Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat. Biotechnol., 27, 361-368.
-
(2009)
Nat. Biotechnol
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
Li, J.B.2
Gao, Y.3
Lee, J.H.4
Leproust, E.M.5
Park, I.H.6
Xie, B.7
Daley, G.Q.8
Church, G.M.9
-
25
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton, A. M. and Bird, A. (2011) CpG islands and the regulation of transcription. Genes Dev., 25, 1010-1022.
-
(2011)
Genes Dev
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
26
-
-
79961022522
-
DNA methylation status predicts cell type-specific enhancer activity
-
Wiench, M., John, S., Baek, S., Johnson, T. A., Sung, M. H., Escobar, T., Simmons, C. A., Pearce, K. H., Biddie, S. C., Sabo, P. J. et al. (2011) DNA methylation status predicts cell type-specific enhancer activity. EMBO J., 30, 3028-3039.
-
(2011)
EMBO J
, vol.30
, pp. 3028-3039
-
-
Wiench, M.1
John, S.2
Baek, S.3
Johnson, T.A.4
Sung, M.H.5
Escobar, T.6
Simmons, C.A.7
Pearce, K.H.8
Biddie, S.C.9
Sabo, P.J.10
-
27
-
-
77952060999
-
Role of Ucp1 enhancer methylation and chromatin remodelling in the control of Ucp1 expression in murine adipose tissue
-
Shore, A., Karamitri, A., Kemp, P., Speakman, J. R. and Lomax, M. A. (2010) Role of Ucp1 enhancer methylation and chromatin remodelling in the control of Ucp1 expression in murine adipose tissue. Diabetologia, 53, 1164-1173.
-
(2010)
Diabetologia
, vol.53
, pp. 1164-1173
-
-
Shore, A.1
Karamitri, A.2
Kemp, P.3
Speakman, J.R.4
Lomax, M.A.5
-
28
-
-
35348836064
-
Requirement for O-linked N-acetylglucosaminyltransferase in lymphocytes activation
-
Golks, A., Tran, T. T., Goetschy, J. F. and Guerini, D. (2007) Requirement for O-linked N-acetylglucosaminyltransferase in lymphocytes activation. EMBO J., 26, 4368-4379.
-
(2007)
EMBO J
, vol.26
, pp. 4368-4379
-
-
Golks, A.1
Tran, T.T.2
Goetschy, J.F.3
Guerini, D.4
-
29
-
-
0034737298
-
RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
-
Zamore, P. D., Tuschl, T., Sharp, P. A. and Bartel, D. P. (2000) RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell, 101, 25-33.
-
(2000)
Cell
, vol.101
, pp. 25-33
-
-
Zamore, P.D.1
Tuschl, T.2
Sharp, P.A.3
Bartel, D.P.4
-
30
-
-
24344445216
-
Something about SUMO inhibits transcription
-
Gill, G. (2005) Something about SUMO inhibits transcription. Curr. Opin. Genet. Dev., 15, 536-541.
-
(2005)
Curr. Opin. Genet. Dev
, vol.15
, pp. 536-541
-
-
Gill, G.1
-
31
-
-
0037071391
-
Hematopoietic cytokines transcription factors and lineage commitment
-
Zhu, J. and Emerson, S. G. (2002) Hematopoietic cytokines, transcription factors and lineage commitment. Oncogene, 21, 3295-3313.
-
(2002)
Oncogene
, vol.21
, pp. 3295-3313
-
-
Zhu, J.1
Emerson, S.G.2
-
32
-
-
77953365479
-
Small RNAs guide hematopoietic cell differentiation and function
-
Navarro, F. and Lieberman, J. (2010) Small RNAs guide hematopoietic cell differentiation and function. J. Immunol., 184, 5939-5947.
-
(2010)
J. Immunol
, vol.184
, pp. 5939-5947
-
-
Navarro, F.1
Lieberman, J.2
-
33
-
-
0442276480
-
Transcriptional control of B cell development and function
-
Bartholdy, B. and Matthias, P. (2004) Transcriptional control of B cell development and function. Gene, 327, 1-23.
-
(2004)
Gene
, vol.327
, pp. 1-23
-
-
Bartholdy, B.1
Matthias, P.2
-
34
-
-
5444222634
-
Early B cell factor cooperates with Runx1 and mediates epigenetic changes associated with mb-1 transcription
-
Maier, H., Ostraat, R., Gao, H., Fields, S., Shinton, S. A., Medina, K. L., Ikawa, T., Murre, C., Singh, H., Hardy, R. R. et al. (2004) Early B cell factor cooperates with Runx1 and mediates epigenetic changes associated with mb-1 transcription. Nat. Immunol., 5, 1069-1077.
-
(2004)
Nat. Immunol
, vol.5
, pp. 1069-1077
-
-
Maier, H.1
Ostraat, R.2
Gao, H.3
Fields, S.4
Shinton, S.A.5
Medina, K.L.6
Ikawa, T.7
Murre, C.8
Singh, H.9
Hardy, R.R.10
-
35
-
-
0037307084
-
The transcription factor Spi-B is expressed in plasmacytoid DC precursors and inhibits T-, B-, and NK-cell development
-
Schotte, R., Rissoan, M. C., Bendriss-Vermare, N., Bridon, J. M., Duhen, T., Weijer, K., Briere, F. and Spits, H. (2003) The transcription factor Spi-B is expressed in plasmacytoid DC precursors and inhibits T-, B-, and NK-cell development. Blood, 101, 1015-1023.
-
(2003)
Blood
, vol.101
, pp. 1015-1023
-
-
Schotte, R.1
Rissoan, M.C.2
Bendriss-Vermare, N.3
Bridon, J.M.4
Duhen, T.5
Weijer, K.6
Briere, F.7
Spits, H.8
-
36
-
-
77955876805
-
Role of PI3K in the generation and survival of B cells
-
Werner, M., Hobeika, E. and Jumaa, H. (2010) Role of PI3K in the generation and survival of B cells. Immunol. Rev., 237, 55-71.
-
(2010)
Immunol. Rev
, vol.237
, pp. 55-71
-
-
Werner, M.1
Hobeika, E.2
Jumaa, H.3
-
37
-
-
78650903043
-
Expanding role of ubiquitination in NF-kappaB signaling
-
Liu, S. and Chen, Z. J. (2011) Expanding role of ubiquitination in NF-kappaB signaling. Cell Res., 21, 6-21.
-
(2011)
Cell Res
, vol.21
, pp. 6-21
-
-
Liu, S.1
Chen, Z.J.2
-
38
-
-
0035478627
-
Cutting edge: Identification of a hybrid cytokine consisting of IL-7 and the beta-chain of the hepatocyte growth factor/scatter factor
-
Lai, L. and Goldschneider, I. (2001) Cutting edge: identification of a hybrid cytokine consisting of IL-7 and the beta-chain of the hepatocyte growth factor/scatter factor. J. Immunol., 167, 3550-3554.
-
(2001)
J. Immunol
, vol.167
, pp. 3550-3554
-
-
Lai, L.1
Goldschneider, I.2
-
39
-
-
0344823990
-
Normal B-1a cell development requires B cell-intrinsic NFATc1 activity
-
Berland, R. and Wortis, H. H. (2003) Normal B-1a cell development requires B cell-intrinsic NFATc1 activity. Proc. Natl Acad. Sci. USA, 100, 13459-13464.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13459-13464
-
-
Berland, R.1
Wortis, H.H.2
-
40
-
-
0024564757
-
Human recombinant IL-3 stimulates B cell differentiation
-
Tadmori, W., Feingersh, D., Clark, S. C. and Choi, Y. S. (1989) Human recombinant IL-3 stimulates B cell differentiation. J. Immunol., 142, 1950-1955.
-
(1989)
J. Immunol
, vol.142
, pp. 1950-1955
-
-
Tadmori, W.1
Feingersh, D.2
Clark, S.C.3
Choi, Y.S.4
-
41
-
-
0024547467
-
IL-3 and stromal cell-derived factor synergistically stimulate the growth of pre-B cell lines cloned from long-term lymphoid bone marrow cultures
-
Rennick, D., Jackson, J., Moulds, C., Lee, F. and Yang, G. (1989) IL-3 and stromal cell-derived factor synergistically stimulate the growth of pre-B cell lines cloned from long-term lymphoid bone marrow cultures. J. Immunol., 142, 161-166.
-
(1989)
J. Immunol
, vol.142
, pp. 161-166
-
-
Rennick, D.1
Jackson, J.2
Moulds, C.3
Lee, F.4
Yang, G.5
-
42
-
-
0034786177
-
Inhibitory effect of interleukin 3 on early development of human B-lymphopoiesis
-
Miyamoto, K., Tsuji, K., Maekawa, T., Asano, S. and Nakahata, T. (2001) Inhibitory effect of interleukin 3 on early development of human B-lymphopoiesis. Br. J. Haematol., 114, 690-697.
-
(2001)
Br. J. Haematol
, vol.114
, pp. 690-697
-
-
Miyamoto, K.1
Tsuji, K.2
Maekawa, T.3
Asano, S.4
Nakahata, T.5
-
43
-
-
79952843357
-
Differential roles of estrogen receptors alpha and beta in control of B-cell maturation and selection
-
Hill, L., Jeganathan, V., Chinnasamy, P., Grimaldi, C. and Diamond, B. (2011) Differential roles of estrogen receptors alpha and beta in control of B-cell maturation and selection. Mol. Med., 17, 211-220.
-
(2011)
Mol. Med
, vol.17
, pp. 211-220
-
-
Hill, L.1
Jeganathan, V.2
Chinnasamy, P.3
Grimaldi, C.4
Diamond, B.5
-
44
-
-
0036086413
-
Estrogen alters thresholds for B cell apoptosis and activation
-
Grimaldi, C. M., Cleary, J., Dagtas, A. S., Moussai, D. and Diamond, B. (2002) Estrogen alters thresholds for B cell apoptosis and activation. J. Clin. Invest., 109, 1625-1633.
-
(2002)
J. Clin. Invest
, vol.109
, pp. 1625-1633
-
-
Grimaldi, C.M.1
Cleary, J.2
Dagtas, A.S.3
Moussai, D.4
Diamond, B.5
-
45
-
-
37549003300
-
Brca1 in immunoglobulin gene conversion and somatic hypermutation
-
Longerich, S., Orelli, B. J., Martin, R. W., Bishop, D. K. and Storb, U. (2008) Brca1 in immunoglobulin gene conversion and somatic hypermutation. DNA Repair (Amst), 7, 253-266.
-
(2008)
DNA Repair (Amst
, vol.7
, pp. 253-266
-
-
Longerich, S.1
Orelli, B.J.2
Martin, R.W.3
Bishop, D.K.4
Storb, U.5
-
46
-
-
81055139701
-
Global DNA demethylation during mouse erythropoiesis in vivo
-
Shearstone, J. R., Pop, R., Bock, C., Boyle, P., Meissner, A. and Socolovsky, M. (2011) Global DNA demethylation during mouse erythropoiesis in vivo. Science, 334, 799-802.
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(2011)
Science
, vol.334
, pp. 799-802
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Shearstone, J.R.1
Pop, R.2
Bock, C.3
Boyle, P.4
Meissner, A.5
Socolovsky, M.6
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