메뉴 건너뛰기




Volumn 37, Issue 1, 2013, Pages 38-47

Testing Genetic Association With Rare Variants in Admixed Populations

Author keywords

Admixed population; Population stratification; Rare variants

Indexed keywords

LOW DENSITY LIPOPROTEIN CHOLESTEROL;

EID: 84871078801     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.21687     Document Type: Article
Times cited : (9)

References (35)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium.
    • 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467:1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 2
    • 0036239116 scopus 로고    scopus 로고
    • Improved confidence intervals in quantitative trait loci mapping by permutation bootstrapping
    • Bennewitz J, Reinsch N, Kalm E. 2002. Improved confidence intervals in quantitative trait loci mapping by permutation bootstrapping. Genetics 160:1673-1686.
    • (2002) Genetics , vol.160 , pp. 1673-1686
    • Bennewitz, J.1    Reinsch, N.2    Kalm, E.3
  • 3
    • 0033951876 scopus 로고    scopus 로고
    • Bootstrap confidence intervals for relative risk parameters in affected-sib-pair data
    • Cordell HJ, Carpenter JR. 2000. Bootstrap confidence intervals for relative risk parameters in affected-sib-pair data. Genet Epidemiol 18:157-172.
    • (2000) Genet Epidemiol , vol.18 , pp. 157-172
    • Cordell, H.J.1    Carpenter, J.R.2
  • 4
    • 0000713911 scopus 로고    scopus 로고
    • Bootstrap confidence intervals
    • DiCiccio T, Efron B. 1996. Bootstrap confidence intervals. Statist Sci 11:189-228.
    • (1996) Statist Sci , vol.11 , pp. 189-228
    • DiCiccio, T.1    Efron, B.2
  • 6
    • 0036144957 scopus 로고    scopus 로고
    • Bootstrap confidence levels for HIV-1 recombinants
    • Dorman KS, Kaplan AH, Sinsheimer JS. 2002. Bootstrap confidence levels for HIV-1 recombinants. J Mol Evol 54:200-209.
    • (2002) J Mol Evol , vol.54 , pp. 200-209
    • Dorman, K.S.1    Kaplan, A.H.2    Sinsheimer, J.S.3
  • 7
    • 34247585477 scopus 로고    scopus 로고
    • A simple and improved correction for population stratification in case-control studies
    • Epstein MP, Allen AS, Satten GA. 2007. A simple and improved correction for population stratification in case-control studies. Am J Hum Genet 80:921-930.
    • (2007) Am J Hum Genet , vol.80 , pp. 921-930
    • Epstein, M.P.1    Allen, A.S.2    Satten, G.A.3
  • 8
    • 77953023261 scopus 로고    scopus 로고
    • Coding sequence rare variants identified in MYBPC3, MYH6, TPM1, TNNC1, and TNNI3 from 312 patients with familial or idiopathic dilated cardiomyopathy
    • Hershberger R, Norton N, Morales A, Li D, Siegfried J, Gonzalez-Quintana J. 2010. Coding sequence rare variants identified in MYBPC3, MYH6, TPM1, TNNC1, and TNNI3 from 312 patients with familial or idiopathic dilated cardiomyopathy. Circ Cardiovasc Genet 3:155-161.
    • (2010) Circ Cardiovasc Genet , vol.3 , pp. 155-161
    • Hershberger, R.1    Norton, N.2    Morales, A.3    Li, D.4    Siegfried, J.5    Gonzalez-Quintana, J.6
  • 9
    • 79952253512 scopus 로고    scopus 로고
    • A new testing strategy to identify rare variants with either risk or protective effect on disease
    • Ionita-Laza I, Buxbaum JD, Laird NM, Lange C. 2011. A new testing strategy to identify rare variants with either risk or protective effect on disease. PLoS Genet 7:e1001289.
    • (2011) PLoS Genet , vol.7
    • Ionita-Laza, I.1    Buxbaum, J.D.2    Laird, N.M.3    Lange, C.4
  • 10
    • 50949095168 scopus 로고    scopus 로고
    • Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data
    • Li B, Leal SM. 2008. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am J Hum Genet 83:311-321.
    • (2008) Am J Hum Genet , vol.83 , pp. 311-321
    • Li, B.1    Leal, S.M.2
  • 11
    • 77951967213 scopus 로고    scopus 로고
    • Correcting population stratification in genetic association studies using a phylogenetic approach
    • Li M, Reilly MP, Rader DJ, Wang L-S. 2010a. Correcting population stratification in genetic association studies using a phylogenetic approach. Bioinformatics 26:798-806.
    • (2010) Bioinformatics , vol.26 , pp. 798-806
    • Li, M.1    Reilly, M.P.2    Rader, D.J.3    Wang, L.-S.4
  • 12
    • 78249272314 scopus 로고    scopus 로고
    • To identify associations with rare variants, just WHaIT: Weighted haplotype and imputation-based tests
    • Li Y, Byrnes AE, Li M. 2010b. To identify associations with rare variants, just WHaIT: Weighted haplotype and imputation-based tests. Am J Hum Genet 87:728-735.
    • (2010) Am J Hum Genet , vol.87 , pp. 728-735
    • Li, Y.1    Byrnes, A.E.2    Li, M.3
  • 13
    • 84871090784 scopus 로고    scopus 로고
    • MaCH-Admix: genotype imputation for admixed populations
    • Genet Epidemiol.12-0124.R1. Manuscript submitted for publication.
    • Liu EY, Li M, Wang W, Liu Y. 2012. MaCH-Admix: genotype imputation for admixed populations. Genet Epidemiol.12-0124.R1. Manuscript submitted for publication.
    • (2012)
    • Liu, E.Y.1    Li, M.2    Wang, W.3    Liu, Y.4
  • 14
    • 61449168010 scopus 로고    scopus 로고
    • A groupwise association test for rare mutations using a weighted sum statistic
    • Madsen BE, Browning SR. 2009. A groupwise association test for rare mutations using a weighted sum statistic. PLoS Genet 5:e1000384.
    • (2009) PLoS Genet , vol.5
    • Madsen, B.E.1    Browning, S.R.2
  • 16
    • 84857641821 scopus 로고    scopus 로고
    • Differential confounding of rare and common variants in spatially structured populations
    • Mathieson I, McVean G. 2012. Differential confounding of rare and common variants in spatially structured populations. Nat Genet 44:243-246.
    • (2012) Nat Genet , vol.44 , pp. 243-246
    • Mathieson, I.1    McVean, G.2
  • 17
    • 18144393461 scopus 로고    scopus 로고
    • Mapping of multiple quantitative trait loci for growth and carcass traits in a complex commercial sheep pedigree
    • McRae AF, Bishop SC, Walling GA, Wilson AD, Visscher PM. 2005. Mapping of multiple quantitative trait loci for growth and carcass traits in a complex commercial sheep pedigree. Anim Sci 80:135-141.
    • (2005) Anim Sci , vol.80 , pp. 135-141
    • McRae, A.F.1    Bishop, S.C.2    Walling, G.A.3    Wilson, A.D.4    Visscher, P.M.5
  • 18
    • 33846014328 scopus 로고    scopus 로고
    • A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: a cohort allelic sums test (CAST)
    • Morgenthaler S, Thilly WG. 2007. A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: a cohort allelic sums test (CAST). Mutat Res 615:28-56.
    • (2007) Mutat Res , vol.615 , pp. 28-56
    • Morgenthaler, S.1    Thilly, W.G.2
  • 25
    • 77951138808 scopus 로고    scopus 로고
    • Whole genome association studies in admixed populations
    • Risch N, Tang H. 2006. Whole genome association studies in admixed populations. Am J Hum Genet S79:254.
    • (2006) Am J Hum Genet , vol.79 S , pp. 254
    • Risch, N.1    Tang, H.2
  • 27
    • 0025328620 scopus 로고
    • Genetic counseling in rare syndromes: a resampling method for determining an approximate confidence interval for gene location with linkage data from a single pedigree
    • Suthers GK, Wilson SR. 1990. Genetic counseling in rare syndromes: a resampling method for determining an approximate confidence interval for gene location with linkage data from a single pedigree. Am J Hum Genet 47:53-61.
    • (1990) Am J Hum Genet , vol.47 , pp. 53-61
    • Suthers, G.K.1    Wilson, S.R.2
  • 29
    • 0003503387 scopus 로고
    • New York: John Wiley and Sons.
    • Wald A. 1947. Sequential Analysis. New York: John Wiley and Sons:.
    • (1947) Sequential Analysis
    • Wald, A.1
  • 30
    • 79951997040 scopus 로고    scopus 로고
    • Adjustment for local ancestry in genetic association analysis of admixed populations
    • Wang X, Zhu X, Qing H, Cooper R, Ewens W, Li C, Li M. 2011. Adjustment for local ancestry in genetic association analysis of admixed populations. Bioinformatics 27:670-677.
    • (2011) Bioinformatics , vol.27 , pp. 670-677
    • Wang, X.1    Zhu, X.2    Qing, H.3    Cooper, R.4    Ewens, W.5    Li, C.6    Li, M.7
  • 32
    • 80051499915 scopus 로고    scopus 로고
    • Rare variant association testing for sequencing data with the sequence kernel association test (SKAT)
    • Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X. 2011. Rare variant association testing for sequencing data with the sequence kernel association test (SKAT). Am J Hum Genet 89:82-93.
    • (2011) Am J Hum Genet , vol.89 , pp. 82-93
    • Wu, M.C.1    Lee, S.2    Cai, T.3    Li, Y.4    Boehnke, M.5    Lin, X.6
  • 33
    • 78650363812 scopus 로고    scopus 로고
    • Bayesian analysis or rare variants in genetic association studies
    • Yi N, Zhi D. 2011. Bayesian analysis or rare variants in genetic association studies. Genet Epidemiol 35:57-69.
    • (2011) Genet Epidemiol , vol.35 , pp. 57-69
    • Yi, N.1    Zhi, D.2
  • 34
    • 84855295482 scopus 로고    scopus 로고
    • Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects
    • Yi N, Liu N, Zhi D, Li J. 2011. Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects. PLoS Genet 7:e1002382.
    • (2011) PLoS Genet , vol.7
    • Yi, N.1    Liu, N.2    Zhi, D.3    Li, J.4
  • 35
    • 78249243049 scopus 로고    scopus 로고
    • Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes
    • Zawistowski M, Gopalakrishnan S, Ding J, Li Y, Grimm S, Zöllner S. 2010. Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes. Am J Hum Genet 87:604-617.
    • (2010) Am J Hum Genet , vol.87 , pp. 604-617
    • Zawistowski, M.1    Gopalakrishnan, S.2    Ding, J.3    Li, Y.4    Grimm, S.5    Zöllner, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.