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Volumn 31, Issue 12, 2012, Pages 872-879

Studying the influence of the pyrene intercalator TINA on the stability of DNA i-motifs

Author keywords

crowding condition; cytosine rich DNA; i Motif; pyrene; TINA intercalating oligonucleotides

Indexed keywords

3 [[4 (1 PYRENYLETHYNYL)BENZYL)OXY]PROPANE 1,2 DIOL]; CYTOSINE; MACROGOL; OLIGONUCLEOTIDE; PROPANE; PYRENE; UNCLASSIFIED DRUG;

EID: 84870906095     PISSN: 15257770     EISSN: 15322335     Source Type: Journal    
DOI: 10.1080/15257770.2012.742199     Document Type: Article
Times cited : (20)

References (39)
  • 1
    • 0038497542 scopus 로고
    • Molecular structure of nucleic acids: A structure for deoxyribose nucleic acid
    • Watson, J. D., and, Crick, F. H. 1953. Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid. Nature, 171: 737-738.
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.2
  • 2
    • 85042639894 scopus 로고
    • The distribution of potential across the low-index crystal planes of germanium contacting an aqueous
    • Gellert, M., Lipsett, M. N., and, Davies, D. R. 1962. The distribution of potential across the low-index crystal planes of germanium contacting an aqueous. Proc. Natl. Acad. Sci. USA, 48: 2013-2018.
    • (1962) Proc. Natl. Acad. Sci. USA , vol.48 , pp. 2013-2018
    • Gellert, M.1    Lipsett, M.N.2    Davies, D.R.3
  • 3
    • 0027278767 scopus 로고
    • Tetrameric DNA structure with protonated cytosine-cytosine base pairs
    • Gehring, K., Leroy, J. L., and, Gueron, M. A. 1993. Tetrameric DNA structure with protonated cytosine-cytosine base pairs. Nature, 363: 561-565.
    • (1993) Nature , vol.363 , pp. 561-565
    • Gehring, K.1    Leroy, J.L.2    Gueron, M.A.3
  • 5
    • 0029805197 scopus 로고    scopus 로고
    • Evidence for a HeLa nuclear protein that binds specifically to the single-stranded d(CCCTAA)n telomeric motif
    • Marsich, E., Piccini, A., Xodo, L. E., and, Manzini, G. 1996. Evidence for a HeLa nuclear protein that binds specifically to the single-stranded d(CCCTAA)n telomeric motif. Nucleic Acids Res., 24: 4029-4033.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4029-4033
    • Marsich, E.1    Piccini, A.2    Xodo, L.E.3    Manzini, G.4
  • 6
    • 0032533980 scopus 로고    scopus 로고
    • Widespread presence in mammals and high binding specificity of a nuclear protein that recognises the single-stranded telomeric motif (CCCTAA)n
    • Marsich, E., Xodo, L. E., and, Manzini, G. 1998. Widespread presence in mammals and high binding specificity of a nuclear protein that recognises the single-stranded telomeric motif (CCCTAA)n. Eur. J. Biochem., 258: 93-99.
    • (1998) Eur. J. Biochem. , vol.258 , pp. 93-99
    • Marsich, E.1    Xodo, L.E.2    Manzini, G.3
  • 8
    • 0035997020 scopus 로고    scopus 로고
    • Participation of yeast inosine 5-monophosphate dehydrogenase in an in vitro complex with a fragment of the C-rich telomeric strand
    • Cornuel, J. F., Moraillon, A., and, Gueron, M. 2002. Participation of yeast inosine 5-monophosphate dehydrogenase in an in vitro complex with a fragment of the C-rich telomeric strand. Biochimie, 84: 279-289.
    • (2002) Biochimie , vol.84 , pp. 279-289
    • Cornuel, J.F.1    Moraillon, A.2    Gueron, M.3
  • 9
    • 0023796273 scopus 로고
    • The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences
    • Wells, R. D., Collier, D. A., Hanvey, J. C., Shimizu, M., and, Wohlrab, F. 1988. The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences. FASEB J., 2: 2939-2949.
    • (1988) FASEB J. , vol.2 , pp. 2939-2949
    • Wells, R.D.1    Collier, D.A.2    Hanvey, J.C.3    Shimizu, M.4    Wohlrab, F.5
  • 10
    • 0028124986 scopus 로고
    • Crystal structure of a four-stranded intercalated DNA: D(C4)
    • Chen, L., Cai, L., Zhang, X., and, Rich, A. 1994. Crystal structure of a four-stranded intercalated DNA: d(C4). Biochemistry, 33: 13540-13546.
    • (1994) Biochemistry , vol.33 , pp. 13540-13546
    • Chen, L.1    Cai, L.2    Zhang, X.3    Rich, A.4
  • 11
    • 0001404315 scopus 로고
    • Molecular structure of helical polycytidylic acid
    • Langridge, R., and, Rich, A. 1963. Molecular structure of helical polycytidylic acid. Nature, 198: 725-728.
    • (1963) Nature , vol.198 , pp. 725-728
    • Langridge, R.1    Rich, A.2
  • 14
    • 33746736017 scopus 로고    scopus 로고
    • A surface-bound DNA switch driven by a chemical oscillator
    • Liedl, T., Olapinski, M., and, Simmel, F. C. 2006. A surface-bound DNA switch driven by a chemical oscillator. Angew. Chem. Int. Ed., 45: 5007-5010.
    • (2006) Angew. Chem. Int. Ed. , vol.45 , pp. 5007-5010
    • Liedl, T.1    Olapinski, M.2    Simmel, F.C.3
  • 16
    • 56849125412 scopus 로고    scopus 로고
    • A simple and sensitive colorimetric pH meter based on DNA conformational switch and gold nanoparticle aggregation
    • Chen, C., Song, G., Ren, J., and, Qu, X. 2008. A simple and sensitive colorimetric pH meter based on DNA conformational switch and gold nanoparticle aggregation. Chem. Commun., 44: 6149-6151.
    • (2008) Chem. Commun. , vol.44 , pp. 6149-6151
    • Chen, C.1    Song, G.2    Ren, J.3    Qu, X.4
  • 17
    • 70349747005 scopus 로고    scopus 로고
    • I-Motif quadruplex DNA-based biosensor for distinguishing single-and multiwalled carbon nanotubes
    • Peng, Y., Wang, X., Xiao, Y., Feng, L., Zhao, C., Ren, J., and, Qu, X. 2009. i-Motif quadruplex DNA-based biosensor for distinguishing single-and multiwalled carbon nanotubes. J. Am. Chem. Soc., 131: 13813-13818.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 13813-13818
    • Peng, Y.1    Wang, X.2    Xiao, Y.3    Feng, L.4    Zhao, C.5    Ren, J.6    Qu, X.7
  • 19
    • 77951847806 scopus 로고    scopus 로고
    • Fullerene attachment enhances performance of a DNA nanomachine
    • Ren, X., He, F., and, Xu, Q.-H. 2010. Fullerene attachment enhances performance of a DNA nanomachine. Chem. Asian J., 5: 1094-1098.
    • (2010) Chem. Asian J. , vol.5 , pp. 1094-1098
    • Ren, X.1    He, F.2    Xu, Q.-H.3
  • 20
    • 77955196995 scopus 로고    scopus 로고
    • Artificial DNA nano-spring powered by protons
    • Wang, C., Huang, Z., Lin, Y., Ren, J., and, Qu, X. 2010. Artificial DNA nano-spring powered by protons. Adv. Mater., 22: 2792-2798.
    • (2010) Adv. Mater. , vol.22 , pp. 2792-2798
    • Wang, C.1    Huang, Z.2    Lin, Y.3    Ren, J.4    Qu, X.5
  • 22
    • 79952342651 scopus 로고    scopus 로고
    • Stimuli-responsive controlled-release system using quadruplex DNA-capped silica nanocontainers
    • Chen, C., Pu, F., Huang, Z., Liu, Z., Ren, J., and, Qu, X. 2011. Stimuli-responsive controlled-release system using quadruplex DNA-capped silica nanocontainers. Nucleic Acids Res., 39: 1638-1644.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 1638-1644
    • Chen, C.1    Pu, F.2    Huang, Z.3    Liu, Z.4    Ren, J.5    Qu, X.6
  • 23
    • 67049154133 scopus 로고    scopus 로고
    • DNA nanomachine that maps spatial and temporal pH changes inside living cells
    • Modi, S., Goswami, G. S.M.D., Gupta, G. D., Mayor, S., and, Krishnan, Y. A. 2009. DNA nanomachine that maps spatial and temporal pH changes inside living cells. Nat. Nanotechnol., 4: 325-330.
    • (2009) Nat. Nanotechnol. , vol.4 , pp. 325-330
    • Modi, S.1    Goswami, G.S.M.D.2    Gupta, G.D.3    Mayor, S.4    Krishnan, Y.A.5
  • 24
    • 79958267629 scopus 로고    scopus 로고
    • An autonomous DNA nanomachine maps spatiotemporal pH changes in a multicellular living organism
    • Article No. 340, DOI:10.1038/ncomms1340
    • Surana, S., Bhat, J. M., Koushika, S. P., and, Krishnan, Y. 2011. An autonomous DNA nanomachine maps spatiotemporal pH changes in a multicellular living organism. Nat. Commun.,. Article No. 340, DOI:10.1038/ncomms1340
    • (2011) Nat. Commun.
    • Surana, S.1    Bhat, J.M.2    Koushika, S.P.3    Krishnan, Y.4
  • 25
    • 78651228099 scopus 로고    scopus 로고
    • Modulation of i-motif thermodynamic stability by the introduction of UNA(unlocked nucleic acid) monomers
    • Pasternak, A., and, Wengel, J. 2011. Modulation of i-motif thermodynamic stability by the introduction of UNA(unlocked nucleic acid) monomers. Bioorg. Med. Chem. Lett., 21: 752-755.
    • (2011) Bioorg. Med. Chem. Lett. , vol.21 , pp. 752-755
    • Pasternak, A.1    Wengel, J.2
  • 26
    • 79951575374 scopus 로고    scopus 로고
    • Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer
    • Pasternak, A., Hernandez, F. J., Rasmussen, L. M., Vester, B., and, Wengel, J. 2010. Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer. Nucleic Acids Res., 39: 1155-1164.
    • (2010) Nucleic Acids Res. , vol.39 , pp. 1155-1164
    • Pasternak, A.1    Hernandez, F.J.2    Rasmussen, L.M.3    Vester, B.4    Wengel, J.5
  • 27
    • 36849092925 scopus 로고    scopus 로고
    • Single-walled carbon nanotubes binding to human telomeric i-motif DNA: Significant acceleration of S1 nuclease cleavage rate
    • Peng, Y., Li, X., Ren, J., and, Qu, X. 2007. Single-walled carbon nanotubes binding to human telomeric i-motif DNA: significant acceleration of S1 nuclease cleavage rate. Chem. Commun.,: 5176-5178.
    • (2007) Chem. Commun. , pp. 5176-5178
    • Peng, Y.1    Li, X.2    Ren, J.3    Qu, X.4
  • 28
    • 84855261964 scopus 로고    scopus 로고
    • Time-resolved NMR spectroscopic studies of DNA i-motif folding reveal kinetic partitioning
    • Lieblein, A. L., Buch, J., Schlepckow, K., and, Frtig, B. 2012. Schwalbe, H. Time-resolved NMR spectroscopic studies of DNA i-motif folding reveal kinetic partitioning. Angew. Chem. Int. Ed., 51: 250-253.
    • (2012) Angew. Chem. Int. Ed. , vol.51 , pp. 250-253
    • Lieblein, A.L.1    Buch, J.2    Schlepckow, K.3    Frtig, B.4    Schwalbe, H.5
  • 29
    • 75649139169 scopus 로고    scopus 로고
    • Molecular dynamics of poly(N-isopropylacrylamide) in protic and aprotic solvents studied by dielectric relaxation spectroscopy
    • Xia, H., Hou, Y., Ngai, T., and, Zhang, G. 2010. Molecular dynamics of poly(N-isopropylacrylamide) in protic and aprotic solvents studied by dielectric relaxation spectroscopy. J. Phys. Chem. B, 114: 775-779.
    • (2010) J. Phys. Chem. B , vol.114 , pp. 775-779
    • Xia, H.1    Hou, Y.2    Ngai, T.3    Zhang, G.4
  • 30
    • 0032212211 scopus 로고    scopus 로고
    • Kinetics and thermodynamics of i-DNA formation: Phosphodiester versus modified oligodeoxynucleotides
    • Mergny, J. L., and, Lacroix, L. 1998. Kinetics and thermodynamics of i-DNA formation: phosphodiester versus modified oligodeoxynucleotides. Nucleic Acids Res., 26: 4797-4803.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4797-4803
    • Mergny, J.L.1    Lacroix, L.2
  • 31
    • 0034282708 scopus 로고    scopus 로고
    • Chemical modifications of pyrimidine TFOs: Effect on i-motif and triple helix formation
    • Lacroix, L., and, Mergny, J.-L. 2000. Chemical modifications of pyrimidine TFOs: effect on i-motif and triple helix formation. Arch. Biochem. Biophys., 381: 153-163.
    • (2000) Arch. Biochem. Biophys. , vol.381 , pp. 153-163
    • Lacroix, L.1    Mergny, J.-L.2
  • 32
    • 69949175490 scopus 로고    scopus 로고
    • Probe for i-motif structure and G-rich strands using end-stacking ability
    • Lee, J., Yi, J. W., and, Kim, B. H. 2009. Probe for i-motif structure and G-rich strands using end-stacking ability. Chem. Commun.,: 5383-5385.
    • (2009) Chem. Commun. , pp. 5383-5385
    • Lee, J.1    Yi, J.W.2    Kim, B.H.3
  • 33
    • 84855682245 scopus 로고    scopus 로고
    • F1U units at terminal and mid-loop positions to probe i-motif structures
    • F1U units at terminal and mid-loop positions to probe i-motif structures. Mol. BioSyst., 8: 486-489.
    • (2012) Mol. BioSyst. , vol.8 , pp. 486-489
    • Lee, J.1    Park, M.2    Joo, T.3    Kim, B.H.4
  • 34
    • 72249093969 scopus 로고    scopus 로고
    • The i-motif in the bcl-2 P1 promoter forms an unexpectedly stable structure with a unique 8:5:7 loop folding pattern
    • Kendrick, S., Akiyama, Y., Hecht, S. M., and, Hurley, L. H. 2009. The i-motif in the bcl-2 P1 promoter forms an unexpectedly stable structure with a unique 8:5:7 loop folding pattern. J. Am. Chem. Soc., 131: 17667-17676.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 17667-17676
    • Kendrick, S.1    Akiyama, Y.2    Hecht, S.M.3    Hurley, L.H.4
  • 35
    • 84863045737 scopus 로고    scopus 로고
    • Monitoring i-motif transitions through the exciplex emission of a fluorescent probe incorporating two PyA units
    • Lee, J., and, Lee, B. H. 2012. Monitoring i-motif transitions through the exciplex emission of a fluorescent probe incorporating two PyA units. Chem. Commun., 48: 2074-2076.
    • (2012) Chem. Commun. , vol.48 , pp. 2074-2076
    • Lee, J.1    Lee, B.H.2
  • 37
    • 60549101098 scopus 로고    scopus 로고
    • Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells
    • Cogoi, S., Paramasivam, M., Filichev, V., Géci, I., Pedersen, E. B., and, Xodo, L. E. 2009. Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells. J. Med. Chem., 52: 564-568.
    • (2009) J. Med. Chem. , vol.52 , pp. 564-568
    • Cogoi, S.1    Paramasivam, M.2    Filichev, V.3    Géci, I.4    Pedersen, E.B.5    Xodo, L.E.6
  • 38
    • 0034716937 scopus 로고    scopus 로고
    • The solution structure and internal motions of a fragment of the cytidine-rich strand of the human telomere
    • Phan, A. T., Guéron, M., and, Leroy, J.-L. 2000. The solution structure and internal motions of a fragment of the cytidine-rich strand of the human telomere. J. Mol. Biol., 299: 123-144.
    • (2000) J. Mol. Biol. , vol.299 , pp. 123-144
    • Phan, A.T.1    Guéron, M.2    Leroy, J.-L.3


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