-
1
-
-
0038579427
-
Bacterial Iron Homeostasis
-
Andrews, S. C., Robinson, A. K., and Rodríguez-Quiñones, F. (2003) Bacterial Iron Homeostasis FEMS Microbiol. Rev. 27, 215-237
-
(2003)
FEMS Microbiol. Rev.
, vol.27
, pp. 215-237
-
-
Andrews, S.C.1
Robinson, A.K.2
Rodríguez-Quiñones, F.3
-
2
-
-
0033985228
-
Iron and oxidative stress in bacteria
-
Touati, D. (2000) Iron and oxidative stress in bacteria Arch. Biochem. Biophys. 373, 1-6
-
(2000)
Arch. Biochem. Biophys.
, vol.373
, pp. 1-6
-
-
Touati, D.1
-
3
-
-
27944471901
-
Formation of protein-coated iron minerals
-
Lewin, A., Moore, G. R., and Le Brun, N. E. (2005) Formation of protein-coated iron minerals Dalton Trans. 22, 3597-3610
-
(2005)
Dalton Trans.
, vol.22
, pp. 3597-3610
-
-
Lewin, A.1
Moore, G.R.2
Le Brun, N.E.3
-
4
-
-
77953807027
-
The Ferritin-like Superfamily: Evolution of the Biological Iron Storeman from a Ruberythrin-like Ancestor
-
Andrews, S. C. (2010) The Ferritin-like Superfamily: Evolution of the Biological Iron Storeman from a Ruberythrin-like Ancestor Biochim. Biophys. Acta 1800, 691-705
-
(2010)
Biochim. Biophys. Acta
, vol.1800
, pp. 691-705
-
-
Andrews, S.C.1
-
5
-
-
46449139197
-
Bacterioferritin from Mycobacterium smegmatis contains zinc in its di-nuclear site
-
Janowski, R., Auerbach-Nevo, T., and Weiss, M. S. (2008) Bacterioferritin from Mycobacterium smegmatis contains zinc in its di-nuclear site Protein Sci. 17, 1138-1150
-
(2008)
Protein Sci.
, vol.17
, pp. 1138-1150
-
-
Janowski, R.1
Auerbach-Nevo, T.2
Weiss, M.S.3
-
6
-
-
76749113944
-
Structural Studies of Bacterioferritin B from Pseudomonas aeruginosa Suggest a Gating Mechanism for Iron Uptake via the Ferroxidase Center
-
Weeratunga, S. K., Lovell, S., Yao, H. L., Battaile, K. P., Fischer, C. J., Gee, C. E., and Rivera, M. (2010) Structural Studies of Bacterioferritin B from Pseudomonas aeruginosa Suggest a Gating Mechanism for Iron Uptake via the Ferroxidase Center Biochemistry 49, 1160-1175
-
(2010)
Biochemistry
, vol.49
, pp. 1160-1175
-
-
Weeratunga, S.K.1
Lovell, S.2
Yao, H.L.3
Battaile, K.P.4
Fischer, C.J.5
Gee, C.E.6
Rivera, M.7
-
7
-
-
0036006679
-
The 2.6 Å resolution structure of Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme iron in a crystallographic 'special position'
-
Cobessi, D., Huang, L. S., Ban, M., Pon, N. G., Daldal, F., and Berry, E. A. (2002) The 2.6 Å resolution structure of Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme iron in a crystallographic 'special position' Acta Crystallogr. D58, 29-38
-
(2002)
Acta Crystallogr.
, vol.58
, pp. 29-38
-
-
Cobessi, D.1
Huang, L.S.2
Ban, M.3
Pon, N.G.4
Daldal, F.5
Berry, E.A.6
-
8
-
-
67650544594
-
Structural basis for iron mineralization by bacterioferritin
-
Crow, A., Lawson, T. L., Lewin, A., Moore, G. R., and Le Brun, N. E. (2009) Structural basis for iron mineralization by bacterioferritin J. Am. Chem. Soc. 131, 6808-6813
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 6808-6813
-
-
Crow, A.1
Lawson, T.L.2
Lewin, A.3
Moore, G.R.4
Le Brun, N.E.5
-
9
-
-
0028467772
-
Structure of a unique two-fold symmetric haem-binding site
-
Frolow, F., Kalb, A. J., and Yariv, J. (1994) Structure of a unique two-fold symmetric haem-binding site Nat. Struct. Biol. 1, 453-460
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 453-460
-
-
Frolow, F.1
Kalb, A.J.2
Yariv, J.3
-
10
-
-
4344712784
-
2.6 Å resolution crystal structure of the bacterioferritin from Azotobacter vinelandii
-
Liu, H. L., Zhou, H. N., Xing, W. M., Zhao, J. F., Li, S. X., Huang, J. F., and Bi, R. C. (2004) 2.6 Å resolution crystal structure of the bacterioferritin from Azotobacter vinelandii FEBS Lett. 573, 93-98
-
(2004)
FEBS Lett.
, vol.573
, pp. 93-98
-
-
Liu, H.L.1
Zhou, H.N.2
Xing, W.M.3
Zhao, J.F.4
Li, S.X.5
Huang, J.F.6
Bi, R.C.7
-
11
-
-
0037389839
-
The nature of the di-iron site in the bacterioferritin from Desulfovibrio desulfuricans
-
Macedo, S., Romao, C. V., Mitchell, E., Matias, P. M., Liu, M. Y., Xavier, A. V., LeGall, J., Teixeira, M., Lindley, P., and Carrondo, M. A. (2003) The nature of the di-iron site in the bacterioferritin from Desulfovibrio desulfuricans Nat. Struct. Biol. 10, 285-290
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 285-290
-
-
MacEdo, S.1
Romao, C.V.2
Mitchell, E.3
Matias, P.M.4
Liu, M.Y.5
Xavier, A.V.6
Legall, J.7
Teixeira, M.8
Lindley, P.9
Carrondo, M.A.10
-
12
-
-
0030035534
-
Evidence that Residues Exposed on the Three-Fold Channels Have Active Roles in the Mechanism of Ferritin Iron Incorporation
-
Levi, S., Santambrogio, P., Corsi, B., Cozzi, A., and Arosio, P. (1996) Evidence that Residues Exposed on the Three-Fold Channels Have Active Roles in the Mechanism of Ferritin Iron Incorporation Biochem. J. 317, 467-473
-
(1996)
Biochem. J.
, vol.317
, pp. 467-473
-
-
Levi, S.1
Santambrogio, P.2
Corsi, B.3
Cozzi, A.4
Arosio, P.5
-
13
-
-
0027732697
-
Defining the Roles of the Three-fold Channels in Iron Uptake, Iron Oxidation and Iron-Core Formation in Ferritin: A Study Aided by Site-Directed Mutagenesis
-
Treffry, A., Bauminger, E. R., Hechel, D., Hodson, N. W., Nowik, I., Yewdall, S. J., and Harrison, P. M. (1993) Defining the Roles of the Three-fold Channels in Iron Uptake, Iron Oxidation and Iron-Core Formation in Ferritin: A Study Aided by Site-Directed Mutagenesis Biochem. J. 296, 721-728
-
(1993)
Biochem. J.
, vol.296
, pp. 721-728
-
-
Treffry, A.1
Bauminger, E.R.2
Hechel, D.3
Hodson, N.W.4
Nowik, I.5
Yewdall, S.J.6
Harrison, P.M.7
-
14
-
-
84859765138
-
Ferritin Protein Nanocage Ion Channels: Gating by N-Terminal Extensions
-
Tosha, T., Behera, R. K., Ng, H. L., Bhattasali, O., Alber, T., and Theil, E. C. (2012) Ferritin Protein Nanocage Ion Channels: Gating by N-Terminal Extensions J. Biol. Chem. 287, 13016-13025
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 13016-13025
-
-
Tosha, T.1
Behera, R.K.2
Ng, H.L.3
Bhattasali, O.4
Alber, T.5
Theil, E.C.6
-
15
-
-
0031547971
-
Comparison of the three-dimensional structures of recombinant human H and horse L ferritins at high resolution
-
Hempstead, P. D., Yewdall, S. J., Fernie, A. R., Lawson, D. M., Artymiuk, P. J., Rice, D. W., Ford, G. C., and Harrison, P. M. (1997) Comparison of the three-dimensional structures of recombinant human H and horse L ferritins at high resolution J. Mol. Biol. 268, 424-448
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 424-448
-
-
Hempstead, P.D.1
Yewdall, S.J.2
Fernie, A.R.3
Lawson, D.M.4
Artymiuk, P.J.5
Rice, D.W.6
Ford, G.C.7
Harrison, P.M.8
-
16
-
-
76749113944
-
Structural Studies of Bacterioferritin B (BfrB) from Pseudomonas aeruginosa Suggest a Gating Mechanism for Iron Uptake via the Ferroxidase Center
-
Weeratunga, S., Lovell, S., Yao, H., Battaile, K. P., Fischer, C. J., Gee, C. E., and Rivera, M. (2010) Structural Studies of Bacterioferritin B (BfrB) from Pseudomonas aeruginosa Suggest a Gating Mechanism for Iron Uptake via the Ferroxidase Center Biochemistry 49, 1160-1175
-
(2010)
Biochemistry
, vol.49
, pp. 1160-1175
-
-
Weeratunga, S.1
Lovell, S.2
Yao, H.3
Battaile, K.P.4
Fischer, C.J.5
Gee, C.E.6
Rivera, M.7
-
17
-
-
79958780940
-
Two distinct ferritin-like molecules in Pseudomonas aeruginosa: The product of the bfrA gene is a bacterial ferritin (FtnA) and not a bacterioferritin (Bfr)
-
Yao, H., Jepkorir, G., Lovell, S., Nama, P. V., Weeratunga, S., Battaile, K. P., and Rivera, M. (2011) Two distinct ferritin-like molecules in Pseudomonas aeruginosa: The product of the bfrA gene is a bacterial ferritin (FtnA) and not a bacterioferritin (Bfr) Biochemistry 50, 5236-5248
-
(2011)
Biochemistry
, vol.50
, pp. 5236-5248
-
-
Yao, H.1
Jepkorir, G.2
Lovell, S.3
Nama, P.V.4
Weeratunga, S.5
Battaile, K.P.6
Rivera, M.7
-
18
-
-
0037389839
-
The Nature of the Di-Iron Site in the Bacterioferritin from Desulfovibrio desulfuricans
-
Macedo, S., Romão, C. V., Mitchell, E., Matias, P. M., Liu, M. Y., Xavier, A. V., LeGall, J., Teixeira, M., Lindley, P., and Carrondo, M. A. (2003) The Nature of the Di-Iron Site in the Bacterioferritin from Desulfovibrio desulfuricans Nat. Struct. Biol. 10, 285-290
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 285-290
-
-
MacEdo, S.1
Romão, C.V.2
Mitchell, E.3
Matias, P.M.4
Liu, M.Y.5
Xavier, A.V.6
Legall, J.7
Teixeira, M.8
Lindley, P.9
Carrondo, M.A.10
-
19
-
-
0037380857
-
Functional properties of three-fold and four-fold channels in ferritin deduced from electrostatic calculations
-
Takahashi, T. and Kuyucak, S. (2003) Functional properties of three-fold and four-fold channels in ferritin deduced from electrostatic calculations Biophys. J. 84, 2256-2263
-
(2003)
Biophys. J.
, vol.84
, pp. 2256-2263
-
-
Takahashi, T.1
Kuyucak, S.2
-
20
-
-
4344712784
-
2.6 Å Resolution Crystal Structure of the Bacterioferritin from Azotobacter vinelandii
-
Liu, H.-L., Zhou, H.-N., Xing, W.-M., Zhao, J.-F., Li, S.-X., Huang, J.-F., and Bi, R.-C. (2004) 2.6 Å Resolution Crystal Structure of the Bacterioferritin from Azotobacter vinelandii FEBS Lett. 573, 93-98
-
(2004)
FEBS Lett.
, vol.573
, pp. 93-98
-
-
Liu, H.-L.1
Zhou, H.-N.2
Xing, W.-M.3
Zhao, J.-F.4
Li, S.-X.5
Huang, J.-F.6
Bi, R.-C.7
-
21
-
-
33645690696
-
Redox-dependent structural changes in the Azotobacter vinelandii bacterioferritin: New insights into the ferroxidase and iron transport mechanism
-
Swartz, L., Kuchinskas, M., Li, H., Poulos, T. L., and Lanzilotta, W. N. (2006) Redox-dependent structural changes in the Azotobacter vinelandii bacterioferritin: New insights into the ferroxidase and iron transport mechanism Biochemistry 45, 4421-4428
-
(2006)
Biochemistry
, vol.45
, pp. 4421-4428
-
-
Swartz, L.1
Kuchinskas, M.2
Li, H.3
Poulos, T.L.4
Lanzilotta, W.N.5
-
22
-
-
84865118837
-
The Structure of the BfrB-Bfd Complex Reveals Protein-Protein Interactions Enabling Iron Release from Bacterioferritin
-
Yao, H., Wang, Y., Lovell, S., Kumar, R., Ruvinsky, A. M., Battaile, K. P., Vakser, I. A., and Rivera, M. (2012) The Structure of the BfrB-Bfd Complex Reveals Protein-Protein Interactions Enabling Iron Release from Bacterioferritin J. Am. Chem. Soc. 134, 13470-13481
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 13470-13481
-
-
Yao, H.1
Wang, Y.2
Lovell, S.3
Kumar, R.4
Ruvinsky, A.M.5
Battaile, K.P.6
Vakser, I.A.7
Rivera, M.8
-
23
-
-
47149096704
-
CHARMM-GUI: A web-based graphical user interface for CHARMM
-
Jo, S., Kim, T., Iyer, V. G., and Im, W. (2008) CHARMM-GUI: A web-based graphical user interface for CHARMM J. Comput. Chem. 29, 1859-1865
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1859-1865
-
-
Jo, S.1
Kim, T.2
Iyer, V.G.3
Im, W.4
-
24
-
-
67650500988
-
CHARMM: The Biomolecular Simulation Program
-
Brooks, B. R., Brooks, C. L., III, MacKerell, A. D., Jr., Nilsson, L., Petrella, R. J., Roux, B., Won, Y., Archontis, G., Bartels, C., Boresch, S., Caflisch, A., Caves, L., Cui, Q., Dinner, A. R., Feig, M., Fischer, S., Gao, J., Hodoscek, M., Im, W., Kuczera, K., Lazaridis, T., Ma, J., Ovchinnikov, V., Paci, E., Pastor, R. W., Post, C. B., Pu, J. Z., Schaefer, M., Tidor, B., Venable, R. M., Woodcock, H. L., Wu, X., Yang, W., York, D. M., and Karplus, M. (2009) CHARMM: The Biomolecular Simulation Program J. Comput. Chem. 30, 1545-1614
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1545-1614
-
-
Brooks, B.R.1
Brooks III, C.L.2
Mackerell Jr., A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
Caflisch, A.11
Caves, L.12
Cui, Q.13
Dinner, A.R.14
Feig, M.15
Fischer, S.16
Gao, J.17
Hodoscek, M.18
Im, W.19
Kuczera, K.20
Lazaridis, T.21
Ma, J.22
Ovchinnikov, V.23
Paci, E.24
Pastor, R.W.25
Post, C.B.26
Pu, J.Z.27
Schaefer, M.28
Tidor, B.29
Venable, R.M.30
Woodcock, H.L.31
Wu, X.32
Yang, W.33
York, D.M.34
Karplus, M.35
more..
-
25
-
-
83855161665
-
Web interface for Brownian dynamics simulation of ion transport and its applications to β-barrel pores
-
Lee, K. I., Jo, S., Rui, H., Egwolf, B., Roux, B., Pastor, R. W., and Im, W. (2012) Web interface for Brownian dynamics simulation of ion transport and its applications to β-barrel pores J. Comput. Chem. 33, 331-339
-
(2012)
J. Comput. Chem.
, vol.33
, pp. 331-339
-
-
Lee, K.I.1
Jo, S.2
Rui, H.3
Egwolf, B.4
Roux, B.5
Pastor, R.W.6
Im, W.7
-
26
-
-
0036389892
-
Ion permeation and selectivity of OmpF porin: A theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory
-
Im, W. and Roux, B. (2002) Ion permeation and selectivity of OmpF porin: A theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory J. Mol. Biol. 322, 851-869
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 851-869
-
-
Im, W.1
Roux, B.2
-
27
-
-
33750652614
-
Brownian Dynamics with Hydrodynamic Interactions
-
Ermak, D. L. and Mccammon, J. A. (1978) Brownian Dynamics with Hydrodynamic Interactions J. Chem. Phys. 69, 1352-1360
-
(1978)
J. Chem. Phys.
, vol.69
, pp. 1352-1360
-
-
Ermak, D.L.1
McCammon, J.A.2
-
28
-
-
0002121327
-
Stochastic problems in physics and astronomy
-
Chandrasekhar, S. (1943) Stochastic problems in physics and astronomy Rev. Mod. Phys. 15, 0001-0089
-
(1943)
Rev. Mod. Phys.
, vol.15
, pp. 0001-0089
-
-
Chandrasekhar, S.1
-
29
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kale, L., and Schulten, K. (2005) Scalable molecular dynamics with NAMD J. Comput. Chem. 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
30
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A. D., Bashford, D., Bellott, M., Dunbrack, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiorkiewicz-Kuczera, J., Yin, D., and Karplus, M. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins J. Phys. Chem. B 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-Mccarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
31
-
-
3142714765
-
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
-
Mackerell, A. D., Feig, M., and Brooks, C. L. (2004) Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations J. Comput. Chem. 25, 1400-1415
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
MacKerell, A.D.1
Feig, M.2
Brooks, C.L.3
-
32
-
-
33751157933
-
Solvent-induced forces between two hydrophillic groups
-
Durell, S. R., Brooks, B. R., and Benniam, A. (1994) Solvent-induced forces between two hydrophillic groups J. Phys. Chem. 98, 2198-2202
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 2198-2202
-
-
Durell, S.R.1
Brooks, B.R.2
Benniam, A.3
-
33
-
-
84986534166
-
New Spherical-Cutoff Methods for Long-Range Forces in Macromolecular Simulation
-
Steinbach, P. J. and Brooks, B. R. (1994) New Spherical-Cutoff Methods for Long-Range Forces in Macromolecular Simulation J. Comput. Chem. 15, 667-683
-
(1994)
J. Comput. Chem.
, vol.15
, pp. 667-683
-
-
Steinbach, P.J.1
Brooks, B.R.2
-
34
-
-
84944648082
-
Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides
-
Shannon, R. (1976) Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides Acta Crystallogr. A32, 751-767
-
(1976)
Acta Crystallogr.
, vol.32
, pp. 751-767
-
-
Shannon, R.1
-
35
-
-
0027430148
-
Kinetic and structural characterization of an intermediate in the biomineralization of bacterioferritin
-
Le Brun, N. E., Wilson, M. T., Andrews, S. C., Guest, J. R., Harrison, P. M., Thomson, A. J., and Moore, G. R. (1993) Kinetic and structural characterization of an intermediate in the biomineralization of bacterioferritin FEBS Lett. 333, 197-202
-
(1993)
FEBS Lett.
, vol.333
, pp. 197-202
-
-
Le Brun, N.E.1
Wilson, M.T.2
Andrews, S.C.3
Guest, J.R.4
Harrison, P.M.5
Thomson, A.J.6
Moore, G.R.7
-
36
-
-
68249097772
-
Binding of Pseudomonas aeruginosa apobacterioferritin-associated ferredoxin to bacterioferritin B promotes heme mediation of electron delivery and mobilization of core mineral iron
-
Weeratunga, S. K., Gee, C. E., Lovell, S., Zeng, Y., Woodin, C. L., and Rivera, M. (2009) Binding of Pseudomonas aeruginosa apobacterioferritin- associated ferredoxin to bacterioferritin B promotes heme mediation of electron delivery and mobilization of core mineral iron Biochemistry 48, 7420-7431
-
(2009)
Biochemistry
, vol.48
, pp. 7420-7431
-
-
Weeratunga, S.K.1
Gee, C.E.2
Lovell, S.3
Zeng, Y.4
Woodin, C.L.5
Rivera, M.6
|