-
1
-
-
58149484940
-
Phylogenetic diversity of sediment bacteria from the Southern Cretan margin, Eastern Mediterranean Sea
-
Polymenakou PN, Lampadariou N, Mandalakis M, Tselepides A (2009) Phylogenetic diversity of sediment bacteria from the Southern Cretan margin, Eastern Mediterranean Sea. Syst Appl Microbiol 32: 17-26.
-
(2009)
Syst Appl Microbiol
, vol.32
, pp. 17-26
-
-
Polymenakou, P.N.1
Lampadariou, N.2
Mandalakis, M.3
Tselepides, A.4
-
2
-
-
33745303955
-
Marine microbial diversity and ecology: importance and future perspectives
-
Surajit D, Lyla PS, Ajmal Khan S (2006) Marine microbial diversity and ecology: importance and future perspectives. Curr Sci 90: 1325-1337.
-
(2006)
Curr Sci
, vol.90
, pp. 1325-1337
-
-
Surajit, D.1
Lyla, P.S.2
Ajmal Khan, S.3
-
3
-
-
0032076192
-
Oceanography: microbial control of oceanic carbon flux:the plot thickens
-
Azam F (1998) Oceanography: microbial control of oceanic carbon flux: the plot thickens. Science 280: 694-696.
-
(1998)
Science
, vol.280
, pp. 694-696
-
-
Azam, F.1
-
4
-
-
85036292988
-
Composition of bacterial communities in deep-sea sediments from the South China Sea, the Andaman Sea and the Indian Ocean
-
Wu H, Yatao Guo Y, Wang G, Dai S, Li X (2011) Composition of bacterial communities in deep-sea sediments from the South China Sea, the Andaman Sea and the Indian Ocean. Afr J Microbiol Res 5: 5273-5283.
-
(2011)
Afr J Microbiol Res
, vol.5
, pp. 5273-5283
-
-
Wu, H.1
Yatao Guo, Y.2
Wang, G.3
Dai, S.4
Li, X.5
-
5
-
-
84870800877
-
Prospects for the study of evolution in the deep biosphere
-
doi:10.3389/fmicb.2011.00285
-
Biddle JF, SylvanJB Brazelton WJ, Tully BJ, Edwards KJ, Moyer CL, Heidelberg JF, Nelson WC (2012) Prospects for the study of evolution in the deep biosphere. Frontiers Microbiol. doi: 10. 3389/fmicb. 2011. 00285.
-
(2012)
Frontiers Microbiol
-
-
Biddle, J.F.1
Sylvan, J.B.2
Brazelton, W.J.3
Tully, B.J.4
Edwards, K.J.5
Moyer, C.L.6
Heidelberg, J.F.7
Nelson, W.C.8
-
6
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D et al (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
-
7
-
-
84857679945
-
Bacterial genomes: habitat specificity and uncharted organisms
-
Dini-Andreote F, Andreote FD, Araújo WL, Trevors JT, van Elsas JD (2012) Bacterial genomes: habitat specificity and uncharted organisms. Microb Ecol 64: 1-7.
-
(2012)
Microb Ecol
, vol.64
, pp. 1-7
-
-
Dini-Andreote, F.1
Andreote, F.D.2
Araújo, W.L.3
Trevors, J.T.4
van Elsas, J.D.5
-
8
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards RA, Rodriguez-Brio B, Wegley L et al (2006) Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7: 57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brio, B.2
Wegley, L.3
-
9
-
-
34547800097
-
Pyrosequencing enumerates and contrasts soil microbial diversity
-
Roesch LF, Fulthope PR, Riva A, Casella G, Hadwin AK et al (2007) Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J 1: 283-290.
-
(2007)
ISME J
, vol.1
, pp. 283-290
-
-
Roesch, L.F.1
Fulthope, P.R.2
Riva, A.3
Casella, G.4
Hadwin, A.K.5
-
10
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR (2007) Microbial population structures in the deep marine biosphere. Science 318: 97-100.
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
Mark Welch, D.B.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
-
11
-
-
56149109448
-
Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing
-
Kim BS, Kim BK, Lee JH, Kim M, Lim YW, Chun J (2008) Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing. J Microbiol 46: 357-363.
-
(2008)
J Microbiol
, vol.46
, pp. 357-363
-
-
Kim, B.S.1
Kim, B.K.2
Lee, J.H.3
Kim, M.4
Lim, Y.W.5
Chun, J.6
-
12
-
-
58149218590
-
Pyrosequencing analysis of the oral microflora of healthy adults
-
Keijser BJF, Zaura E, Huse SM et al (2008) Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res 87: 1016-1020.
-
(2008)
J Dent Res
, vol.87
, pp. 1016-1020
-
-
Keijser, B.J.F.1
Zaura, E.2
Huse, S.M.3
-
13
-
-
54549106898
-
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
-
Liu Z, DeSantis TZ, Andersen GL, Knight R (2008) Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucl Acid Res 36: 120.
-
(2008)
Nucl Acid Res
, vol.36
, pp. 120
-
-
Liu, Z.1
DeSantis, T.Z.2
Andersen, G.L.3
Knight, R.4
-
15
-
-
42049111815
-
Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing
-
Dowd SE, Sun Y, Secor PR, Rhoads DD, Wolcott BM, James CA, Wolcott RD (2008) Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing. BMC Microbiol 8: 43-58.
-
(2008)
BMC Microbiol
, vol.8
, pp. 43-58
-
-
Dowd, S.E.1
Sun, Y.2
Secor, P.R.3
Rhoads, D.D.4
Wolcott, B.M.5
James, C.A.6
Wolcott, R.D.7
-
16
-
-
72949107142
-
Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M et al (2009) Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
17
-
-
84859223193
-
Distinct approaches for the detection and removal of chimeric 16S rRNA sequences can significantly affect the outcome of between-site comparisons
-
Zajec N, Stres B, Avgustin G (2012) Distinct approaches for the detection and removal of chimeric 16S rRNA sequences can significantly affect the outcome of between-site comparisons. Aquat Microb Ecol 66: 13-21.
-
(2012)
Aquat Microb Ecol
, vol.66
, pp. 13-21
-
-
Zajec, N.1
Stres, B.2
Avgustin, G.3
-
18
-
-
13444304367
-
The ribosomal database project (RDP-II): sequences and tools for high-throughput rRNA analysis
-
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM (2004) The ribosomal database project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucl Acids Res 33: D294-D296.
-
(2004)
Nucl Acids Res
, vol.33
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
Garrity, G.M.7
Tiedje, J.M.8
-
20
-
-
77953627150
-
SVofItTwareOMI: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
-
Mori H, Maruyama F, Kurokawa K (2010) SVofItTwareOMI: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences. BMC Bioinformatics 11: 332.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 332
-
-
Mori, H.1
Maruyama, F.2
Kurokawa, K.3
-
22
-
-
84862259392
-
Analysis of 16S rRNA environmental sequences using MEGAN
-
Mitra S, Stark M, Huson DH (2011) Analysis of 16S rRNA environmental sequences using MEGAN. BMC Genomics 21: 17.
-
(2011)
BMC Genomics
, vol.21
, pp. 17
-
-
Mitra, S.1
Stark, M.2
Huson, D.H.3
-
23
-
-
78049240050
-
The effects of alignment quality, distance calculation method, sequence filtering and region on the analysis of 16s rRna gene-based studies
-
Schloss PD (2010) The effects of alignment quality, distance calculation method, sequence filtering and region on the analysis of 16s rRna gene-based studies. PLoS Comput Biol 6: e1000844.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Schloss, P.D.1
-
24
-
-
84862331433
-
Bacterial dominance in subseafloor sediments characterized by methane hydrates
-
Briggs BR, Inagaki F, Morono Y, Futagami T, Huguet C, Rosell-Mele A, Lorenson TD, Colwell FS (2012) Bacterial dominance in subseafloor sediments characterized by methane hydrates. FEMS Microbiol Ecol 81: 88-98.
-
(2012)
FEMS Microbiol Ecol
, vol.81
, pp. 88-98
-
-
Briggs, B.R.1
Inagaki, F.2
Morono, Y.3
Futagami, T.4
Huguet, C.5
Rosell-Mele, A.6
Lorenson, T.D.7
Colwell, F.S.8
-
25
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson AF, Lindberg M, Jakobsson H, Backhed F, Nyren P, Engstrand L (2008) Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 3: e2836.
-
(2008)
PLoS ONE
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Backhed, F.4
Nyren, P.5
Engstrand, L.6
-
26
-
-
84870847376
-
An evaluation of the bacterial diversity at Tshipise, Mphephu and Sagole hot water springs, Limpopo Province, South Africa
-
Tekere M, Prinsloo A, Olivier J, Jonker N, Venter S (2012) An evaluation of the bacterial diversity at Tshipise, Mphephu and Sagole hot water springs, Limpopo Province, South Africa. Afr J Microbiol Res 6: 4993-5004.
-
(2012)
Afr J Microbiol Res
, vol.6
, pp. 4993-5004
-
-
Tekere, M.1
Prinsloo, A.2
Olivier, J.3
Jonker, N.4
Venter, S.5
-
27
-
-
0038369933
-
Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
-
Bowman JP, McCuaig RD (2003) Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl Environ Microbiol 69: 2463-2483.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2463-2483
-
-
Bowman, J.P.1
McCuaig, R.D.2
-
28
-
-
29144451923
-
Microbial diversity at a deep-sea station of the Pacific Nodule Province
-
Xu M, Wang P, Wang F, Xiao X (2005) Microbial diversity at a deep-sea station of the Pacific Nodule Province. Biodiversity Conserv 14: 3363-3380.
-
(2005)
Biodiversity Conserv
, vol.14
, pp. 3363-3380
-
-
Xu, M.1
Wang, P.2
Wang, F.3
Xiao, X.4
-
29
-
-
0035158607
-
Quantitative molecular analysis of the microbial community in marine arctic sediments (svalbard)
-
Ravenschlag K, Sahm K, Amann R (2000) Quantitative molecular analysis of the microbial community in marine arctic sediments (svalbard). Appl Environ Microbiol 67: 387-395.
-
(2000)
Appl Environ Microbiol
, vol.67
, pp. 387-395
-
-
Ravenschlag, K.1
Sahm, K.2
Amann, R.3
-
30
-
-
0035670024
-
Environmental influences on regional deep-sea species diversity
-
Levin LA, Etter RJ, Rex MA, Gooday AJ, Smith CR, Pineda J, Stuart CT, Hessler RR, Pawson D (2001) Environmental influences on regional deep-sea species diversity. Annu Rev Ecol Syst 132: 51-93.
-
(2001)
Annu Rev Ecol Syst
, vol.132
, pp. 51-93
-
-
Levin, L.A.1
Etter, R.J.2
Rex, M.A.3
Gooday, A.J.4
Smith, C.R.5
Pineda, J.6
Stuart, C.T.7
Hessler, R.R.8
Pawson, D.9
-
31
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored rare biosphere
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arretia JM, Herndl GJ (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci USA 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arretia, J.M.7
Herndl, G.J.8
-
32
-
-
0033935001
-
Phylogeny of marine Bacillus isolates from the Gulf of Mexico
-
Siefert JL, Larios-Sanz M, Nakamura LK, Slepecky RA, Paul JH, Moore ER, Fox GE, Jurtshuk P (2000) Phylogeny of marine Bacillus isolates from the Gulf of Mexico. Curr Microbiol 41: 84-88.
-
(2000)
Curr Microbiol
, vol.41
, pp. 84-88
-
-
Siefert, J.L.1
Larios-Sanz, M.2
Nakamura, L.K.3
Slepecky, R.A.4
Paul, J.H.5
Moore, E.R.6
Fox, G.E.7
Jurtshuk, P.8
-
33
-
-
38649083715
-
Species-level identification of Bacillus strains isolated from marine sediments by conventional biochemical, 16S rRNA gene sequencing and inter-tRNA gene sequence lengths analysis
-
Miranda CA, Martins OB, Clementino MM (2008) Species-level identification of Bacillus strains isolated from marine sediments by conventional biochemical, 16S rRNA gene sequencing and inter-tRNA gene sequence lengths analysis. Antonie van Leeuwenhock 93: 297-304.
-
(2008)
Antonie Van Leeuwenhock
, vol.93
, pp. 297-304
-
-
Miranda, C.A.1
Martins, O.B.2
Clementino, M.M.3
-
34
-
-
62649143667
-
Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification
-
Jang SK, Zhang W, Qian PY (2009) Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification. J Microbiol Methods 77: 48-57.
-
(2009)
J Microbiol Methods
, vol.77
, pp. 48-57
-
-
Jang, S.K.1
Zhang, W.2
Qian, P.Y.3
-
35
-
-
0033291546
-
Characterization of Bacillus strains of marine origin
-
Ivanova EP, Vysotskii MV, Svetashev VI, Nedashkovskaya OI, Gorshkova NM, Mikhailov VV, Yumoto N, Shigeri Y, Taguchi T, Yoshikawa S (1999) Characterization of Bacillus strains of marine origin. Int Microbiol 2: 267-271.
-
(1999)
Int Microbiol
, vol.2
, pp. 267-271
-
-
Ivanova, E.P.1
Vysotskii, M.V.2
Svetashev, V.I.3
Nedashkovskaya, O.I.4
Gorshkova, N.M.5
Mikhailov, V.V.6
Yumoto, N.7
Shigeri, Y.8
Taguchi, T.9
Yoshikawa, S.10
-
36
-
-
0002197311
-
Surface enhancement of bacterial manganese oxidation: implications for aquatic environments
-
Nealson KH, Ford J (1980) Surface enhancement of bacterial manganese oxidation: implications for aquatic environments. Geo Microbiol J 2: 21-37.
-
(1980)
Geo Microbiol J
, vol.2
, pp. 21-37
-
-
Nealson, K.H.1
Ford, J.2
-
37
-
-
85061000027
-
Bacterially-mediated mineral formation: insights into manganese(II) oxidation from molecular genetic and biochemical studies
-
Washington, DC. Mineral Soc Am, Banfield JF, Nealson KH (eds)
-
Tebo BM, Ghiorse WC, Waasbergen LG, Sering PL, Caspi R (1997) Bacterially-mediated mineral formation: insights into manganese(II) oxidation from molecular genetic and biochemical studies. In: Banfield JF, Nealson KH (eds) Geomicrobiology: interactions between microbes and minerals, Washington, DC. Mineral Soc Am 35: 225-266.
-
(1997)
Geomicrobiology: Interactions between microbes and minerals
, vol.35
, pp. 225-266
-
-
Tebo, B.M.1
Ghiorse, W.C.2
Waasbergen, L.G.3
Sering, P.L.4
Caspi, R.5
-
38
-
-
64049085946
-
Complete genome sequence of Erythrobacter litoralis HTCC2594
-
Oh HM, Giovannoni SJ, Ferriera S, Johnson J, Cho JC (2009) Complete genome sequence of Erythrobacter litoralis HTCC2594. J Bacteriol 191: 2419-2420.
-
(2009)
J Bacteriol
, vol.191
, pp. 2419-2420
-
-
Oh, H.M.1
Giovannoni, S.J.2
Ferriera, S.3
Johnson, J.4
Cho, J.C.5
-
39
-
-
52449128969
-
Thiohalospira halophila gen. nov., sp. nov., and T. alkaliphila sp. nov., novel obligately chemolithoautotrophic, halophilic, sulfur-oxidizing gammaproteobacteria from hypersaline habitats
-
Sorokin DY, Tourova TP, Muyzer G, Kuenen GJ (2008) Thiohalospira halophila gen. nov., sp. nov., and T. alkaliphila sp. nov., novel obligately chemolithoautotrophic, halophilic, sulfur-oxidizing gammaproteobacteria from hypersaline habitats. Int J Syst Evol Microbiol 58: 1685-1692.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1685-1692
-
-
Sorokin, D.Y.1
Tourova, T.P.2
Muyzer, G.3
Kuenen, G.J.4
|