-
1
-
-
46249097882
-
Swelfe: A detector of internal repeats in sequences and structures
-
Abraham,A.L. et al. (2008) Swelfe: a detector of internal repeats in sequences and structures. Bioinformatics, 24, 1536-1537.
-
(2008)
Bioinformatics
, vol.24
, pp. 1536-1537
-
-
Abraham, A.L.1
-
2
-
-
0035783061
-
Protein repeats: Structures functions, and evolution
-
Andrade, M.A. et al. (2001) Protein repeats: structures, functions, and evolution. J. Struct. Biol., 134, 117-131.
-
(2001)
J. Struct. Biol
, vol.134
, pp. 117-131
-
-
Andrade, M.A.1
-
3
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
Berman,H. et al. (2007) The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res., 35, D301-D303.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Berman, H.1
-
4
-
-
40749144066
-
De novo identification of highly diverged protein repeats by probabilistic consistency
-
Biegert, A. and Soding,J. (2008) De novo identification of highly diverged protein repeats by probabilistic consistency. Bioinformatics, 24, 807-814.
-
(2008)
Bioinformatics
, vol.24
, pp. 807-814
-
-
Biegert, A.1
Soding, J.2
-
5
-
-
0028238234
-
Complex recombination events at the hypermutable minisatellite CEB1 (D2S90)
-
Buard,J. and Vergnaud,G. (1994) Complex recombination events at the hypermutable minisatellite CEB1 (D2S90). EMBO J., 13, 3203-3210.
-
(1994)
EMBO J
, vol.13
, pp. 3203-3210
-
-
Buard, J.1
Vergnaud, G.2
-
6
-
-
80054023203
-
Role of leucine-rich repeat proteins in the development and function of neural circuits
-
de Wit,J. et al. (2011) Role of leucine-rich repeat proteins in the development and function of neural circuits. Annu. Rev. Cell Dev. Biol., 27, 697-729.
-
(2011)
Annu. Rev. Cell Dev. Biol
, vol.27
, pp. 697-729
-
-
De Wit, J.1
-
7
-
-
0034333196
-
Rapid automatic detection and alignment of repeats in protein sequences
-
Heger,A. and Holm,L. (2000) Rapid automatic detection and alignment of repeats in protein sequences. Proteins, 41, 224-237.
-
(2000)
Proteins
, vol.41
, pp. 224-237
-
-
Heger, A.1
Holm, L.2
-
8
-
-
78650101939
-
Protein homorepeats sequences, structures, evolution, and functions
-
Jorda,J. and Kajava,A.V. (2010) Protein homorepeats sequences, structures, evolution, and functions. Adv. Protein Chem. Struct. Biol., 79, 59-88.
-
(2010)
Adv. Protein Chem. Struct. Biol
, vol.79
, pp. 59-88
-
-
Jorda, J.1
Kajava, A.V.2
-
9
-
-
22944483841
-
A new folding paradigm for repeat proteins
-
Kajander,T. et al. (2005) A new folding paradigm for repeat proteins. J. Am. Chem. Soc., 127, 10188-10190.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 10188-10190
-
-
Kajander, T.1
-
10
-
-
0035783062
-
Review: Proteins with repeated sequence-structural prediction and modeling
-
Kajava,A.V. (2001) Review: proteins with repeated sequence-structural prediction and modeling. J. Struct. Biol., 134, 132-144.
-
(2001)
J. Struct. Biol
, vol.134
, pp. 132-144
-
-
Kajava, A.V.1
-
11
-
-
84865174088
-
Tandem repeats in proteins: From sequence to structure
-
Kajava,A.V. (2011) Tandem repeats in proteins: from sequence to structure. J. Struct. Biol., 179, 279-288.
-
(2011)
J. Struct. Biol
, vol.179
, pp. 279-288
-
-
Kajava, A.V.1
-
12
-
-
33845657434
-
Beta-structures in fibrous proteins
-
Kajava,A.V. et al. (2006) Beta-structures in fibrous proteins. Adv. Protein Chem., 73, 1-15.
-
(2006)
Adv. Protein Chem
, vol.73
, pp. 1-15
-
-
Kajava, A.V.1
-
13
-
-
19544367146
-
Recoverable one-dimensional encoding of three-dimensional protein structures
-
Kinjo,A.R. and Nishikawa,K. (2005) Recoverable one-dimensional encoding of three-dimensional protein structures. Bioinformatics, 21, 2167-2170.
-
(2005)
Bioinformatics
, vol.21
, pp. 2167-2170
-
-
Kinjo, A.R.1
Nishikawa, K.2
-
14
-
-
0034306119
-
When protein folding is simplified to protein coiling: The continuum of solenoid protein structures
-
Kobe,B. and Kajava,A.V. (2000) When protein folding is simplified to protein coiling: the continuum of solenoid protein structures. Trends Biochem. Sci., 25, 509-515.
-
(2000)
Trends Biochem. Sci
, vol.25
, pp. 509-515
-
-
Kobe, B.1
Kajava, A.V.2
-
15
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li,W. and Godzik,A. (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
16
-
-
0041428117
-
The folding and design of repeat proteins: Reaching a consensus
-
Main,E.R. et al. (2003) The folding and design of repeat proteins: reaching a consensus. Curr. Opin. Struct. Biol., 13, 482-489.
-
(2003)
Curr. Opin. Struct. Biol
, vol.13
, pp. 482-489
-
-
Main, E.R.1
-
17
-
-
23044475553
-
A recurring theme in protein engineering: The design stability and folding of repeat proteins
-
Main,E.R. et al. (2005) A recurring theme in protein engineering: the design, stability and folding of repeat proteins. Curr. Opin. Struct. Biol., 15, 464-471.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 464-471
-
-
Main, E.R.1
-
18
-
-
0033569354
-
A census of protein repeats
-
Marcotte,E.M. et al. (1999) A census of protein repeats. J. Mol. Biol., 293, 151-160.
-
(1999)
J. Mol. Biol
, vol.293
, pp. 151-160
-
-
Marcotte, E.M.1
-
19
-
-
66349088076
-
REPETITA: Detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform
-
Marsella,L. et al. (2009) REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform. Bioinformatics, 25, i289-i295.
-
(2009)
Bioinformatics
, vol.25
-
-
Marsella, L.1
-
20
-
-
0036290642
-
Wavelet transforms for the characterization and detection of repeating motifs
-
Murray, K.B. et al. (2002)Wavelet transforms for the characterization and detection of repeating motifs. J. Mol. Biol., 316, 341-363.
-
(2002)
J. Mol. Biol
, vol.316
, pp. 341-363
-
-
Murray, K.B.1
-
21
-
-
4544298192
-
Toward the detection and validation of repeats in protein structure
-
Murray, K.B. et al. (2004) Toward the detection and validation of repeats in protein structure. Proteins, 57, 365-380.
-
(2004)
Proteins
, vol.57
, pp. 365-380
-
-
Murray, K.B.1
-
22
-
-
0037246767
-
The CATH database: An extended protein family resource for structural and functional genomics
-
Pearl, F.M. et al. (2003) The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Res., 31, 452-455.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 452-455
-
-
Pearl, F.M.1
-
23
-
-
77953285175
-
ProSTRIP: A method to find similar structural repeats in three-dimensional protein structures
-
Sabarinathan, R. et al. (2010) ProSTRIP: a method to find similar structural repeats in three-dimensional protein structures. Comput. Biol. Chem., 34, 126-130.
-
(2010)
Comput. Biol. Chem
, vol.34
, pp. 126-130
-
-
Sabarinathan, R.1
-
24
-
-
3142745171
-
Alternative alignments from comparison of protein structures
-
Shih, E.S. and Hwang, M.J. (2004) Alternative alignments from comparison of protein structures. Proteins, 56, 519-527.
-
(2004)
Proteins
, vol.56
, pp. 519-527
-
-
Shih, E.S.1
Hwang, M.J.2
-
25
-
-
55749104577
-
TESE: Generating specific protein structure test set ensembles
-
Sirocco, F. and Tosatto, S.C. (2008) TESE: generating specific protein structure test set ensembles. Bioinformatics, 24, 2632-2633.
-
(2008)
Bioinformatics
, vol.24
, pp. 2632-2633
-
-
Sirocco, F.1
Tosatto, S.C.2
-
26
-
-
80054870896
-
DARPins recognizing the tumor-associated antigen EpCAM selected by phage and ribosome display and engineered for multivalency
-
Stefan, N. et al. (2011) DARPins recognizing the tumor-associated antigen EpCAM selected by phage and ribosome display and engineered for multivalency. J. Mol. Biol., 413, 826-843.
-
(2011)
J. Mol. Biol
, vol.413
, pp. 826-843
-
-
Stefan, N.1
-
27
-
-
20444451594
-
Tracking repeats using significance and transitivity
-
Szklarczyk, R. and Heringa, J. (2004) Tracking repeats using significance and transitivity. Bioinformatics, 20 (Suppl. 1), I311-I317.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Szklarczyk, R.1
Heringa, J.2
|