Identification and distribution of high-abundance proteins in the octopus spring microbial mat community

Applied and Environmental Microbiology

Volumn 78, Issue 23, 2012, Pages 8481-8484

  Schaffert, Courtney S ^a   Klatt, Christian G ^b,d   Ward, David M ^b   Pauley, Mark ^c   Steinke, Laurey ^a  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

^b MONTANA STATE UNIVERSITY   (United States)

^c UNIVERSITY OF NEBRASKA AT OMAHA   (United States)

^d SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

CO2 FIXATION; HIGH-ABUNDANCE PROTEINS; KEY ENZYMES;

CARBON DIOXIDE; HOT SPRINGS; MICROORGANISMS;

PROTEINS;

BACTERIAL PROTEIN; CARBON DIOXIDE; PROTEOME;

CARBON DIOXIDE; CARBON FIXATION; ENZYME ACTIVITY; HETEROTROPHY; MICROBIAL COMMUNITY; MICROBIAL MAT; PHOTOCHEMISTRY; PROTEIN; PROTEOMICS; THERMAL SPRING;

ARTICLE; CARBON CYCLE; CHLOROFLEXI; ENZYMOLOGY; GENETICS; LIQUID CHROMATOGRAPHY; METABOLISM; MICROBIOLOGY; SEDIMENT; TANDEM MASS SPECTROMETRY; THERMAL SPRING;

BACTERIAL PROTEINS; CARBON CYCLE; CARBON DIOXIDE; CHLOROFLEXI; CHROMATOGRAPHY, LIQUID; GEOLOGIC SEDIMENTS; HOT SPRINGS; METABOLIC NETWORKS AND PATHWAYS; PROTEOME; TANDEM MASS SPECTROMETRY;

OCTOPUS; ROSEIFLEXUS;

EID: 84870777134     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01695-12     Document Type: Article

References (23)

1. Alber BE, Fuchs G. 2002. Propionyl-coenzyme A synthase from Chloroflexus aurantiacus, a key enzyme of the 3-hydroxypropionate cycle for autotrophic CO2 fixation. J. Biol. Chem. 277:12137-12143.
2. Allewalt JP, Bateson MM, Revsbech NP, Slack K, Ward DM. 2006. Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the Octopus Spring microbial mat community of Yellowstone National Park. Appl. Environ. Microbiol. 72:544-550.
3. Belnap C, et al. 2010. Cultivation and quantitative proteomic analyses of acidophilic microbial communities. ISME J. 4:510-530.
4. Benndorf D, Balcke GU, Harms H, von Bergen M. 2007. Functional metaproteome analysis of protein extracts from contaminated soil and groundwater. ISME J. 1:224-234.
5. Blangy D, Buc H, Monod J. 1968. Kinetics of the allosteric interactions of phosphofructokinase from Escherichia coli. J. Mol. Biol. 31:13-35.
6. Bryant DA, et al. 2007. Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium. Science 317:523-526.
7. Burg D, Ng C, Ting L, Cavicchioli R. 2011. Proteomics of extremophiles. Environ. Microbiol. 13:1934-1955.
8. Hügler M, Menendez C, Schägger H, Fuchs G. 2002. Malonyl-coenzyme A reductase from Chloroflexus aurantiacus, a key enzyme of the 3-hydroxypropionate cycle for autotrophic CO2 fixation. J. Bacteriol. 184: 2404-2410.
9. Jensen SI, Steunou AS, Bhaya D, Kühl M, Grossman AR. 2011. In situ dynamics of O2, pH and cyanobacterial transcripts associated with CCM, photosynthesis and detoxification of ROS. ISME J. 5:317-328.
10. Klatt CG, Bryant DA, Ward DM. 2007. Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats. Environ. Microbiol. 9:2067-2078.
11. Klatt CG, et al. 2011. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. ISME J. 5:1262-1278.
12. Liu Z, et al. 2011. Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. ISME J. 5:1279-1290.
13. Liu Z, et al. 2012. 'Candidatus Thermochlorobacter aerophilum': an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics. ISME J. 6:1869-1882.
14. Lund PA. 2009. Multiple chaperonins in bacteria-why so many? FEMS Microbiol. Rev. 22:785-800.
15. Nold SC, Kopczynski ED, Ward DM. 1996. Cultivation of aerobic chemoorganotrophic proteobacteria and gram-positive bacteria from a hot spring microbial mat. Appl. Environ. Microbiol. 62:3917-3921.
16. Steunou AS, et al. 2008. Regulation of nif gene expression and the energetics ofN2 fixation over the diel cycle in a hot spring microbial mat. ISME J. 2:364-378.
17. van der Meer MTJ, et al. 2005. Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park. Appl. Environ. Microbiol. 71: 3978-3986.
18. van der Meer MTJ, Schouten S, Damsté JS, Ward DM. 2007. Impact of carbon metabolism on 13C signatures of cyanobacteria and green nonsulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA). Environ. Microbiol. 9:482-491.
19. van der Meer MTJ, et al. 2010. Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats. J. Bacteriol. 192:3033-3042.
20. Ward DM, Ferris MJ, Nold SC, Bateson MM. 1998. A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiol. Mol. Biol. Rev. 62:1353-1370.
21. Ward DM. 2006. Microbial diversity in natural environments: focusing on fundamental questions. Antonie Van Leeuwenhoek 90:309-324.
22. Ward DM, Klatt CG, Wood J, Cohan FM, Bryant DA. 2012. Functional genomics in an ecological and evolutionary context: maximizing the value of genomes in systems biology, p 1-16. In Burnap RL, Vermaas W (ed), Functional genomics and evolution of photosynthetic systems. Springer, Dordrecht, The Netherlands.
23. Wilmes P, Wexler M, Bond PL. 2008. Metaproteomics provides functional insight into activated sludge wastewater treatment. PLoS One 3:e1778. doi:10.1371/journal.pone.0001778.