-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
0000651747
-
Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat
-
Bateson, M. M., and D. M. Ward. 1988. Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat. Appl. Environ. Microbiol. 54:1738-1743.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1738-1743
-
-
Bateson, M.M.1
Ward, D.M.2
-
3
-
-
84967847314
-
Comparative analysis of 16S ribosomal RNA sequences of thermophilic fermentative bacteria isolated from hot spring cyanobacterial mats
-
Bateson, M. M., J. Wiegel, and D. M. Ward. 1989. Comparative analysis of 16S ribosomal RNA sequences of thermophilic fermentative bacteria isolated from hot spring cyanobacterial mats. Syst. Appl. Microbiol. 12:1-7.
-
(1989)
Syst. Appl. Microbiol.
, vol.12
, pp. 1-7
-
-
Bateson, M.M.1
Wiegel, J.2
Ward, D.M.3
-
4
-
-
0000183512
-
Vertical zonation in hot spring algal mats
-
Brock, T. D. 1969. Vertical zonation in hot spring algal mats. Phycologia 8:201-205.
-
(1969)
Phycologia
, vol.8
, pp. 201-205
-
-
Brock, T.D.1
-
6
-
-
0014501198
-
Thermus aquaticus gen. n. and sp. n., a non-sporulating extreme thermophile
-
Brock, T. D., and H. Freeze. 1969. Thermus aquaticus gen. n. and sp. n., a non-sporulating extreme thermophile. J. Bacteriol. 98:289-297.
-
(1969)
J. Bacteriol.
, vol.98
, pp. 289-297
-
-
Brock, T.D.1
Freeze, H.2
-
7
-
-
1842362290
-
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
-
Brosius, J., M. L. Palmer, J. K. Poindexter, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
-
(1978)
Proc. Natl. Acad. Sci. USA
, vol.75
, pp. 4801-4805
-
-
Brosius, J.1
Palmer, M.L.2
Poindexter, J.K.3
Noller, H.F.4
-
8
-
-
0027338910
-
Viability and isolation of marine bacteria by dilution culture: Theory, procedures, and initial results
-
Button, D. K., F. Schut, P. Quang, R. Martin, and B. R. Robertson. 1993. Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results. Appl. Environ. Microbiol. 59:881-891.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 881-891
-
-
Button, D.K.1
Schut, F.2
Quang, P.3
Martin, R.4
Robertson, B.R.5
-
9
-
-
0003087154
-
Isolation and cultivation of thermophilic cyanobacteria
-
M. P. Starr, H. Stolp, H. G. Trüper, A. Balows, and H. G. Schlegel (ed.), Springer-Verlag, New York
-
Castenholz, R. W. 1981. Isolation and cultivation of thermophilic cyanobacteria, p. 236-246. In M. P. Starr, H. Stolp, H. G. Trüper, A. Balows, and H. G. Schlegel (ed.), The prokaryotes: a handbook on habitats, isolation, and identification of bacteria. Springer-Verlag, New York.
-
(1981)
The Prokaryotes: A Handbook on Habitats, Isolation, and Identification of Bacteria
, pp. 236-246
-
-
Castenholz, R.W.1
-
10
-
-
0029032318
-
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
-
Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stackebrandt, E.3
-
11
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (version 3.2)
-
Felsenstein, J. 1989. PHYLIP - Phylogeny Inference Package (version 3.2). Cladistics 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
12
-
-
0030063913
-
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
-
Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62:340-346.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 340-346
-
-
Ferris, M.J.1
Muyzer, G.2
Ward, D.M.3
-
13
-
-
0029661226
-
Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring mat habitat
-
Ferris, M. J., A. L. Ruff-Roberts, E. D. Kopczynski, M. M. Bateson, and D. M. Ward. 1996. Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring mat habitat. Appl. Environ. Microbiol. 62:1045-1050.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1045-1050
-
-
Ferris, M.J.1
Ruff-Roberts, A.L.2
Kopczynski, E.D.3
Bateson, M.M.4
Ward, D.M.5
-
15
-
-
0001440603
-
Isosphaera pallida, gen. and comb. nov., a gliding, budding eubacterium from hot springs
-
Giovannoni, S. J., E. Schabtach, and R. W. Castenholz. 1987. Isosphaera pallida, gen. and comb. nov., a gliding, budding eubacterium from hot springs. Arch. Microbiol. 147:276-284.
-
(1987)
Arch. Microbiol.
, vol.147
, pp. 276-284
-
-
Giovannoni, S.J.1
Schabtach, E.2
Castenholz, R.W.3
-
16
-
-
0019947912
-
Bacillus flavothermus, a newly isolated facultative thermophile
-
Heinen, W., A. M. Lauwers, and J. M. W. Mulders. 1982. Bacillus flavothermus, a newly isolated facultative thermophile. Antonie Leeuwenhoek 48: 265-272.
-
(1982)
Antonie Leeuwenhoek
, vol.48
, pp. 265-272
-
-
Heinen, W.1
Lauwers, A.M.2
Mulders, J.M.W.3
-
17
-
-
0029061139
-
Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis
-
Huber, R., S. Burggraf, T. Mayer, S. M. Barns, P. Rossnagel, and K. O. Stetter. 1995. Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis. Nature (London) 376:57-58.
-
(1995)
Nature (London)
, vol.376
, pp. 57-58
-
-
Huber, R.1
Burggraf, S.2
Mayer, T.3
Barns, S.M.4
Rossnagel, P.5
Stetter, K.O.6
-
18
-
-
10344241647
-
16S rRNA-targeted polymerase chain reaction and oligonucleotide hybridization to screen for Azoarcus spp., grass-associated diazotrophs
-
Hurek, T., S. Burggraf, C. R. Woese, and B. Reinhold-Hurek. 1993. 16S rRNA-targeted polymerase chain reaction and oligonucleotide hybridization to screen for Azoarcus spp., grass-associated diazotrophs. Int. J. Syst. Bacteriol. 43:826-831.
-
(1993)
Int. J. Syst. Bacteriol.
, vol.43
, pp. 826-831
-
-
Hurek, T.1
Burggraf, S.2
Woese, C.R.3
Reinhold-Hurek, B.4
-
19
-
-
0015796065
-
Thermomicrobium, a new genus of extremely thermophilic bacteria
-
Jackson, J. J., R. F. Ramaley, and W. G. Meinschein. 1973. Thermomicrobium, a new genus of extremely thermophilic bacteria. Int. J. Syst. Bacteriol. 23:28-36.
-
(1973)
Int. J. Syst. Bacteriol.
, vol.23
, pp. 28-36
-
-
Jackson, J.J.1
Ramaley, R.F.2
Meinschein, W.G.3
-
20
-
-
0028082207
-
Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
-
Kopczynski, E. D., M. M. Bateson, and D. M. Ward. 1994. Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Environ. Microbiol. 60:746-748.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 746-748
-
-
Kopczynski, E.D.1
Bateson, M.M.2
Ward, D.M.3
-
21
-
-
0028170111
-
The ribosomal database project
-
Maidak, B. L., N. Larsen, M. J. McCaughey, R. Overbeek, G. J. Olsen, K. Fogel, J. Blandy, and C. R. Woese. 1994. The ribosomal database project. Nucleic Acids Res. 22:3485-3487.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3485-3487
-
-
Maidak, B.L.1
Larsen, N.2
McCaughey, M.J.3
Overbeek, R.4
Olsen, G.J.5
Fogel, K.6
Blandy, J.7
Woese, C.R.8
-
22
-
-
0029092017
-
Diverse Thermus species inhabit a single hot spring microbial mat
-
Nold, S. C., and D. M. Ward. 1995. Diverse Thermus species inhabit a single hot spring microbial mat. Syst. Appl. Microbiol. 18:274-278.
-
(1995)
Syst. Appl. Microbiol.
, vol.18
, pp. 274-278
-
-
Nold, S.C.1
Ward, D.M.2
-
23
-
-
0000891327
-
Temperature strains of a thermophilic blue-green alga
-
Peary, J. A., and R. W. Castenholz. 1964. Temperature strains of a thermophilic blue-green alga. Nature (London) 202:720-721.
-
(1964)
Nature (London)
, vol.202
, pp. 720-721
-
-
Peary, J.A.1
Castenholz, R.W.2
-
24
-
-
0002640880
-
The family Chloroflexaceae
-
A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), Springer-Verlag, New York
-
Pierson, B. K., and R. W. Castenholz. 1992. The family Chloroflexaceae, p. 3754-3774. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes: a handbook on habitats, isolation, and identification of bacteria, 2nd ed. Springer-Verlag, New York.
-
(1992)
The Prokaryotes: A Handbook on Habitats, Isolation, and Identification of Bacteria, 2nd Ed.
, pp. 3754-3774
-
-
Pierson, B.K.1
Castenholz, R.W.2
-
25
-
-
0027955374
-
The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis
-
Rainey, F. A., D. Fritze, and E. Stackenbrandt. 1994. The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis. FEMS Microbiol. Lett. 115:205-212.
-
(1994)
FEMS Microbiol. Lett.
, vol.115
, pp. 205-212
-
-
Rainey, F.A.1
Fritze, D.2
Stackenbrandt, E.3
-
26
-
-
0027169610
-
Azoarcus gen. nov., nitrogen-fixing proteobacteria associated with roots of kallar grass (Leptochloa fusca (L.) Kunth), and description of two species, Azoarcus indigens sp. nov. and Azoarcus communis sp. nov
-
Reinhold-Hurek, B., T. Hurek, M. Gillis, B. Hoste, M. Vancanneyt, K. Kersters, and J. De Ley. 1993. Azoarcus gen. nov., nitrogen-fixing proteobacteria associated with roots of kallar grass (Leptochloa fusca (L.) Kunth), and description of two species, Azoarcus indigens sp. nov. and Azoarcus communis sp. nov. Int. J. Syst. Bacteriol. 43:574-584.
-
(1993)
Int. J. Syst. Bacteriol.
, vol.43
, pp. 574-584
-
-
Reinhold-Hurek, B.1
Hurek, T.2
Gillis, M.3
Hoste, B.4
Vancanneyt, M.5
Kersters, K.6
De Ley, J.7
-
27
-
-
0026794170
-
Differential amplification of rRNA genes by polymerase chain reaction
-
Reysenbach, A.-L., L. J. Giver, G. S. Wickham, and N. R. Pace. 1992. Differential amplification of rRNA genes by polymerase chain reaction. Appl. Environ. Microbiol. 58:3417-3418.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 3417-3418
-
-
Reysenbach, A.-L.1
Giver, L.J.2
Wickham, G.S.3
Pace, N.R.4
-
28
-
-
0028915470
-
Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences
-
Robison-Cox, J. F., M. M. Bateson, and D. M. Ward. 1995. Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences. Appl. Environ. Microbiol. 61:1240-1245.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 1240-1245
-
-
Robison-Cox, J.F.1
Bateson, M.M.2
Ward, D.M.3
-
29
-
-
0023629714
-
Survival strategies of bacteria in the natural environment
-
Roszak, D. B., and R. R. Colwell. 1987. Survival strategies of bacteria in the natural environment. Microbiol. Rev. 51:365-379.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 365-379
-
-
Roszak, D.B.1
Colwell, R.R.2
-
30
-
-
0029851589
-
Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat
-
Santegoeds, C. M., S. C. Nold, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat. Appl. Environ. Microbiol. 62:3922-3928.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3922-3928
-
-
Santegoeds, C.M.1
Nold, S.C.2
Ward, D.M.3
-
31
-
-
0027337265
-
Isolation of typical marine bacteria by dilution culture: Growth, maintenance, and characteristics of isolates under laboratory conditions
-
Schut, F., E. J. de Vries, J. C. Gottschal, B. R. Robertson, W. Harder, R. A. Prins, and D. K. Button. 1993. Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions. Appl. Environ. Microbiol. 59:2150-2160.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 2150-2160
-
-
Schut, F.1
De Vries, E.J.2
Gottschal, J.C.3
Robertson, B.R.4
Harder, W.5
Prins, R.A.6
Button, D.K.7
-
32
-
-
0027369363
-
Molecular systematics of the genus Zoogloea and emendation of the genus
-
Shin, Y. K., A. Hiraishi, and J. Sugiyama. 1993. Molecular systematics of the genus Zoogloea and emendation of the genus. Int. J. Syst. Bacteriol. 43:826-831.
-
(1993)
Int. J. Syst. Bacteriol.
, vol.43
, pp. 826-831
-
-
Shin, Y.K.1
Hiraishi, A.2
Sugiyama, J.3
-
33
-
-
0042033997
-
The "Delft school" and the rise of general microbiology
-
van Niel, C. B. 1949. The "Delft school" and the rise of general microbiology. Bacteriol. Rev. 13:161-174.
-
(1949)
Bacteriol. Rev.
, vol.13
, pp. 161-174
-
-
Van Niel, C.B.1
-
34
-
-
85143848022
-
Ribosomal RNA analysis of microorganisms as they occur in nature
-
Ward, D. M., M. M. Bateson, R. Weller, and A. L. Ruff-Roberts. 1992. Ribosomal RNA analysis of microorganisms as they occur in nature. Adv. Microb. Ecol. 12:219-286.
-
(1992)
Adv. Microb. Ecol.
, vol.12
, pp. 219-286
-
-
Ward, D.M.1
Bateson, M.M.2
Weller, R.3
Ruff-Roberts, A.L.4
-
35
-
-
0007511155
-
Species diversity in hot spring microbial mats as revealed by both molecular and enrichment culture approaches - Relationship between biodiversity and community structure
-
L. J. Stal and P. Caumette (ed.), Springer-Verlag KG, Heidelberg, Germany
-
Ward, D. M., M. J. Ferris, S. C. Nold, M. M. Bateson, E. D. Kopczynski, and A. L. Ruff-Roberts. 1994. Species diversity in hot spring microbial mats as revealed by both molecular and enrichment culture approaches - relationship between biodiversity and community structure, p. 33-44. In L. J. Stal and P. Caumette (ed.), Microbial mats: structure, development and environmental significance. Springer-Verlag KG, Heidelberg, Germany.
-
(1994)
Microbial Mats: Structure, Development and Environmental Significance
, pp. 33-44
-
-
Ward, D.M.1
Ferris, M.J.2
Nold, S.C.3
Bateson, M.M.4
Kopczynski, E.D.5
Ruff-Roberts, A.L.6
-
36
-
-
0002138974
-
Methods for extracting RNA or ribosomes from microbial mats and cultivated microorganisms
-
1.2.3 A. D. L. Akkermans, J. D. van Elsas, and F. J. De Bruijn (ed.), Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Ward, D. M., A. L. Ruff-Roberts, and R. Weller. 1995. Methods for extracting RNA or ribosomes from microbial mats and cultivated microorganisms, p. 1.2.3:1-14. In A. D. L. Akkermans, J. D. van Elsas, and F. J. De Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(1995)
Molecular Microbial Ecology Manual
, pp. 1-14
-
-
Ward, D.M.1
Ruff-Roberts, A.L.2
Weller, R.3
-
37
-
-
10344241103
-
Biodiversity within hot spring microbial communities: Molecular monitoring of enrichment cultures
-
in press
-
Ward, D. M., C. M. Santegoeds, S. C. Nold, N. B. Ramsing, M. J. Ferris, and M. M. Bateson. Biodiversity within hot spring microbial communities: molecular monitoring of enrichment cultures. Antonie van Leeuwenhoek, in press.
-
Antonie Van Leeuwenhoek
-
-
Ward, D.M.1
Santegoeds, C.M.2
Nold, S.C.3
Ramsing, N.B.4
Ferris, M.J.5
Bateson, M.M.6
-
38
-
-
0025366456
-
16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
-
Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature (London) 344:63-65.
-
(1990)
Nature (London)
, vol.344
, pp. 63-65
-
-
Ward, D.M.1
Weller, R.2
Bateson, M.M.3
-
39
-
-
0026439890
-
Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat
-
Weller, R., M. M. Bateson, B. K. Heimbuch, E. D. Kopczynski, and D. M. Ward. 1992. Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat. Appl. Environ. Microbiol. 58:3964-3969.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 3964-3969
-
-
Weller, R.1
Bateson, M.M.2
Heimbuch, B.K.3
Kopczynski, E.D.4
Ward, D.M.5
-
40
-
-
0026069361
-
Transfer of Rhodocyclus gelatinosus to Rubrivivax gelatinosus gen. nov., comb. nov., and phylogenetic relationships with Leptrothrix, Sphaerotilus natans, Pseudomonas saccharophila, and Alcaligenes latus
-
Willems, A., M. Gillis, and J. De Ley. 1991. Transfer of Rhodocyclus gelatinosus to Rubrivivax gelatinosus gen. nov., comb. nov., and phylogenetic relationships with Leptrothrix, Sphaerotilus natans, Pseudomonas saccharophila, and Alcaligenes latus. Int. J. Syst. Bacteriol. 41:65-73.
-
(1991)
Int. J. Syst. Bacteriol.
, vol.41
, pp. 65-73
-
-
Willems, A.1
Gillis, M.2
De Ley, J.3
-
42
-
-
0023184331
-
Bacterial evolution
-
Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
43
-
-
0025919248
-
A correlation of phylogenetic diversity in the Proteobacteria with the influences of ecological forces
-
Zavarzin, G. A., E. Stackenbrandt, and R. G. E. Murray. 1990. A correlation of phylogenetic diversity in the Proteobacteria with the influences of ecological forces. Can. J. Microbiol. 37:1-6.
-
(1990)
Can. J. Microbiol.
, vol.37
, pp. 1-6
-
-
Zavarzin, G.A.1
Stackenbrandt, E.2
Murray, R.G.E.3
|