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Volumn 10, Issue , 2011, Pages

Systematic enrichment analysis of gene expression profiling studies identifies consensus pathways implicated in colorectal cancer development

Author keywords

Carcinogenesis; colorectal cancer; enrichment analysis; gene expression profiling

Indexed keywords

CARBONATE DEHYDRATASE; ISOENZYME; RIBOSOME PROTEIN;

EID: 84870628179     PISSN: 09746773     EISSN: 14773163     Source Type: Journal    
DOI: 10.4103/1477-3163.78268     Document Type: Article
Times cited : (26)

References (27)
  • 3
    • 41549166455 scopus 로고    scopus 로고
    • Meta-Analysis of colorectal cancer gene expression profiling studies identifies consistently reported candidate biomarkers
    • DOI 10.1158/1055-9965.EPI-07-2615
    • Chan SK, Griffith OL, Tai IT, Jones SJ. Meta-Analysis of colorectal cancer gene expression profiling studies identifies consistently reported candidate biomarkers. Cancer Epidemiol Biomarkers Prev 2008;17:543-52. (Pubitemid 351469203)
    • (2008) Cancer Epidemiology Biomarkers and Prevention , vol.17 , Issue.3 , pp. 543-552
    • Chan, S.K.1    Griffith, O.L.2    Tai, I.T.3    Jones, S.J.M.4
  • 4
    • 23844500657 scopus 로고    scopus 로고
    • Web-based data warehouse on gene expression in human colorectal cancer
    • DOI 10.1002/pmic.200402107
    • Sagynaliev E, Steinert R, Nestler G, Lippert H, Knoch M, Reymond MA. Web-based data warehouse on gene expression in human colorectal cancer. Proteomics 2005;5:3066-78. (Pubitemid 41176473)
    • (2005) Proteomics , vol.5 , Issue.12 , pp. 3066-3078
    • Sagynaliev, E.1    Steinert, R.2    Nestler, G.3    Lippert, H.4    Knoch, M.5    Reymond, M.-A.6
  • 6
    • 65949104586 scopus 로고    scopus 로고
    • Genomewide association studies and human disease
    • Hardy J, Singleton A. Genomewide association studies and human disease. N Engl J Med 2009;360:1759-68.
    • (2009) N Engl J Med , vol.360 , pp. 1759-1768
    • Hardy, J.1    Singleton, A.2
  • 7
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang da W, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009;37:1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 8
    • 45549107329 scopus 로고    scopus 로고
    • Use and misuse of the gene ontology annotations
    • DOI 10.1038/nrg2363, PII NRG2363
    • Rhee SY, Wood V, Dolinski K, Draghici S. Use and misuse of the gene ontology annotations. Nat Rev Genet 2008;9:509-15. (Pubitemid 351861540)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.7 , pp. 509-515
    • Yon Rhee, S.1    Wood, V.2    Dolinski, K.3    Draghici, S.4
  • 9
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009;4:44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 12
    • 70549086622 scopus 로고    scopus 로고
    • Growth control and ribosome biogenesis
    • Lempiainen H, Shore D. Growth control and ribosome biogenesis. Curr Opin Cell Biol 2009;21:855-63.
    • (2009) Curr Opin Cell Biol , vol.21 , pp. 855-863
    • Lempiainen, H.1    Shore, D.2
  • 13
    • 33947691529 scopus 로고    scopus 로고
    • Ribosomal proteins and colorectal cancer
    • DOI 10.2174/138920207780076938
    • Lai MD, Xu J. Ribosomal proteins and colorectal cancer. Curr Genomics 2007;8:43-9. (Pubitemid 46488274)
    • (2007) Current Genomics , vol.8 , Issue.1 , pp. 43-49
    • Lai, M.-D.1    Xu, J.2
  • 14
    • 72949119124 scopus 로고    scopus 로고
    • Integrins in cancer: Biological implications and therapeutic opportunities
    • Desgrosellier JS, Cheresh DA. Integrins in cancer: Biological implications and therapeutic opportunities. Nat Rev Cancer 2010;10:9-22.
    • (2010) Nat Rev Cancer , vol.10 , pp. 9-22
    • Desgrosellier, J.S.1    Cheresh, D.A.2
  • 16
    • 77953521863 scopus 로고    scopus 로고
    • Drug design studies of the novel antitumor targets carbonic anhydrase IX and XII
    • Guler OO, De Simone G, Supuran CT. Drug design studies of the novel antitumor targets carbonic anhydrase IX and XII. Curr Med Chem 2010;17:1516-26.
    • (2010) Curr Med Chem , vol.17 , pp. 1516-1526
    • Guler, O.O.1    De Simone, G.2    Supuran, C.T.3
  • 17
    • 77952571665 scopus 로고    scopus 로고
    • Carbonic anhydrase inhibition as a cancer therapy: A review of patent literature 2007-2009
    • Poulsen SA. Carbonic anhydrase inhibition as a cancer therapy: A review of patent literature, 2007-2009. Expert Opin Ther Pat 2010;20:795-806.
    • (2010) Expert Opin Ther Pat , vol.20 , pp. 795-806
    • Poulsen, S.A.1
  • 18
    • 67349245787 scopus 로고    scopus 로고
    • New insights into the aetiology of colorectal cancer from genome-wide association studies
    • Tenesa A, Dunlop MG. New insights into the aetiology of colorectal cancer from genome-wide association studies. Nat Rev Genet 2009;10:353-8.
    • (2009) Nat Rev Genet , vol.10 , pp. 353-358
    • Tenesa, A.1    Dunlop, M.G.2
  • 19
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • DOI 10.1093/bioinformatics/bti565
    • Khatri P, Draghici S. Ontological analysis of gene expression data: Current tools, limitations, and open problems. Bioinformatics 2005;21:3587-95. (Pubitemid 41264092)
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3587-3595
    • Khatri, P.1    Draghici, S.2
  • 20
    • 58149194611 scopus 로고    scopus 로고
    • ConsensusPathDB-A database for integrating human functional interaction networks
    • (Database issue)
    • Kamburov A, Wierling C, Lehrach H, Herwig R. ConsensusPathDB-A database for integrating human functional interaction networks. Nucleic Acids Res 2009;37(Database issue):D623-8.
    • (2009) Nucleic Acids Res , vol.37
    • Kamburov, A.1    Wierling, C.2    Lehrach, H.3    Herwig, R.4
  • 21
    • 1542399989 scopus 로고    scopus 로고
    • FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes
    • DOI 10.1093/bioinformatics/btg455
    • Al-Shahrour F, Diaz-Uriarte R, Dopazo J. FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 2004;20:578-80. (Pubitemid 38344339)
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 578-580
    • Al-Shahrour, F.1    Diaz-Uriarte, R.2    Dopazo, J.3
  • 22
    • 33751384465 scopus 로고    scopus 로고
    • GATHER: A systems approach to interpreting genomic signatures
    • DOI 10.1093/bioinformatics/btl483
    • Chang JT, Nevins JR. GATHER: A systems approach to interpreting genomic signatures. Bioinformatics 2006;22:2926-33. (Pubitemid 44811565)
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2926-2933
    • Chang, J.T.1    Nevins, J.R.2
  • 24
    • 2942550697 scopus 로고    scopus 로고
    • GOTree Machine (GOTM: A web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
    • Zhang B, Schmoyer D, Kirov S, Snoddy J. GOTree Machine (GOTM): A web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies. BMC Bioinformatics 2004;5:16.
    • (2004) BMC Bioinformatics , vol.5 , pp. 16
    • Zhang, B.1    Schmoyer, D.2    Kirov, S.3    Snoddy, J.4
  • 25
    • 34547571030 scopus 로고    scopus 로고
    • G:Profiler-A web-based toolset for functional profiling of gene lists from large-scale experiments
    • Reimand J, Kull M, Peterson H, Hansen J, Vilo J. g:Profiler-A web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res 2007;35:W193-200.
    • (2007) Nucleic Acids Res , vol.35
    • Reimand, J.1    Kull, M.2    Peterson, H.3    Hansen, J.4    Vilo, J.5
  • 26
    • 67849130563 scopus 로고    scopus 로고
    • ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
    • Chen J, Bardes EE, Aronow BJ, Jegga AG. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 2009;37:W305-11.
    • (2009) Nucleic Acids Res , vol.37
    • Chen, J.1    Bardes, E.E.2    Aronow, B.J.3    Jegga, A.G.4
  • 27
    • 23144464901 scopus 로고    scopus 로고
    • WebGestalt: An integrated system for exploring gene sets in various biological contexts
    • DOI 10.1093/nar/gki475
    • Zhang B, Kirov S, Snoddy J. WebGestalt: An integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res 2005;33:W741-8. (Pubitemid 44530021)
    • (2005) Nucleic Acids Research , vol.33
    • Zhang, B.1    Kirov, S.2    Snoddy, J.3


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