Novel FixL homologues in Chlamydomonas reinhardtii bind heme and O 2

FEBS Letters

Volumn 586, Issue 24, 2012, Pages 4282-4288

  Murthy, U M Narayana ^a   Wecker, Matt S A ^b   Posewitz, Matthew C ^c   Gilles Gonzalez, Marie Alda ^d   Ghirardi, Maria L ^a  

^a NATIONAL RENEWABLE ENERGY LABORATORY   (United States)

^b GeneBiologics LLC   (United States)

^c Department of Geology and Geological Engineering   (United States)

^d UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

Chlamydomonas reinhardtii; FixL; Heme binding; Oxygen sensor

Indexed keywords

HEMOPROTEIN; HISTIDINE; OXYGEN; PROTEIN FIXL1; PROTEIN FIXL5; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CHLAMYDOMONAS REINHARDTII; ESCHERICHIA COLI; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BINDING SITES; CHLAMYDOMONAS REINHARDTII; ESCHERICHIA COLI; GENOME, BACTERIAL; HEME; HEMEPROTEINS; HISTIDINE; MOLECULAR SEQUENCE DATA; MUTATION; OXYGEN; PHOSPHORYLATION; SPECTROPHOTOMETRY;

CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; ESCHERICHIA COLI;

EID: 84870519743     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2012.06.052     Document Type: Article

References (29)

1. T.K. Antal, T.E. Krendeleva, T.V. Laurinavichene, V.V. Makarova, M.L. Ghirardi, A.B. Rubin, A.A. Tsygankov, and M. Seibert The dependence of algal H2 production on Photosystem II and O2 consumption activities in sulfur-deprived Chlamydomonas reinhardtii cells Biochim. Biophys. Acta 1607 2003 153 160
2. S. Fouchard, A. Hemschemeier, A. Caruana, J. Pruvost, J. Legrand, T. Happe, G. Peltier, and L. Cournac Autotrophic and mixotrophic hydrogen photoproduction in sulfur-deprived chlamydomonas cells Appl. Environ. Microbiol. 71 2005 6199 6205
3. A. Melis, L. Zhang, M. Forestier, M.L. Ghirardi, and M. Seibert Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii Plant Physiol. 122 2000 127 136
4. R.P. Gfeller, and M. Gibbs Fermentative metabolism of Chlamydomonas reinhardtii: I. Analysis of fermentative products from starch in dark and light Plant Physiol. 75 1984 212 218
5. O. Kruse, J. Rupprecht, J.H. Mussgnug, G.C. Dismukes, and B. Hankamer Photosynthesis: a blueprint for solar energy capture and biohydrogen production technologies Photochem. Photobiol. Sci. 4 2005 957 970
6. F. Mus, A. Dubini, M. Seibert, M.C. Posewitz, and A.R. Grossman Anaerobic acclimation in Chlamydomonas reinhardtii: anoxic gene expression, hydrogenase induction and metabolic pathways J. Biol. Chem. 282 2007 25475 25486
7. M.C. Posewitz, P.W. King, S.L. Smolinski, L. Zhang, M. Seibert, and M.L. Ghirardi Discovery of two novel radical S-adenosylmethionine proteins required for the assembly of an active [Fe] hydrogenase J. Biol. Chem. 279 2004 25711 25720
8. M.C. Posewitz, S.L. Smolinski, S. Kanakagiri, A. Melis, M. Seibert, and M.L. Ghirardi Hydrogen photoproduction is attenuated by disruption of an isoamylase gene in Chlamydomonas reinhardtii Plant Cell 16 2004 2151 2163
9. A. Dubini, F. Mus, M. Seibert, A.R. Grossman, and M.C. Posewitz Flexibility in anaerobic metabolism as revealed in a mutant of Chlamydomonas reinhardtii lacking hydrogenase activity J. Biol. Chem. 284 2009 7201 7213
10. T. Lassmann, and E. Sonnhammer Kalign - an accurate and fast multiple sequence alignment algorithm BMC Bioinformatics 6 2005 298
11. U.M.N. Murthy Characterization of Arabidopsis thaliana SufE2 and SufE3. Functions in chloroplast iron-sulfur cluster assembly and NAD synthesis J. Biol. Chem. 284 2009 27020
12. R.T. Francis, and R.R. Becker Specific indication of hemoproteins in polyacrylamide gels using a double-staining process Anal. Biochem. 136 1984 509 514
13. C. Suquet, M. Savenkova, and J.D. Satterlee Recombinant PAS-heme domains of oxygen sensing proteins: high level production and physical characterization Protein Expr. Purif. 42 2005 182 193
14. M.Z. Atassi, and C. Childress Oxygen-binding heme complexes of peptides designed to mimic the heme environment of myoglobin and hemoglobin Protein J. 24 2005 37 49
15. M.A. Gilles-Gonzalez, G. Gonzalez, M.F. Perutz, L. Kiger, M.C. Marden, and C. Poyart Heme-based sensors, exemplified by the kinase FixL, are a new class of heme protein with distinctive ligand binding and autoxidation Biochemistry 33 1994 8067 8073
16. B.L. Taylor, and I.B. Zhulin PAS domains: internal sensors of oxygen, redox potential, and light Microbiol. Mol. Biol. Rev. 63 1999 479 506
17. L.H. Davis, E. Otto, and V. Bennett Specific 33-residue repeat(S) of erythrocyte ankyrin associate with the anion-exchanger J. Biol. Chem. 266 1991 11163 11169
18. M.M. Shull, D.G. Pugh, and J.B. Lingrel Characterization of the human Na, K-Atpase alpha-2 gene and identification of intragenic restriction fragment length polymorphisms J. Biol. Chem. 264 1989 17532 17543
19. P.R. Smith, G. Saccomani, E.H. Joe, K.J. Angelides, and D.J. Benos Amiloride-sensitive sodium-channel is linked to the cytoskeleton in renal epithelial-cells Proc. Natl. Acad. Sci. U.S.A. 88 1991 6971 6975
20. E. Kordeli, and V. Bennett Distinct ankyrin isoforms at neuron cell-bodies and nodes of Ranvier resolved using erythrocyte ankyrin deficient mice J. Cell Biol. 114 1991 1243 1259
21. L.Y.W. Bourguignon, and H.T. Jin Identification of the ankyrin-binding domain of the mouse T-lymphoma cell inositol 1,4,5-trisphosphate (Ip3) receptor and its role in the regulation of Ip3-mediated internal Ca2+ release J. Biol. Chem. 270 1995 7257 7260
22. J. Kropat, S. Tottey, R.P. Birkenbihl, N. Depege, P. Huijser, and S. Merchant A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element Proc. Natl. Acad. Sci. U.S.A. 102 2005 18730 18735
23. M.L. Quillin, R.M. Arduini, J.S. Olson, and G.N. Phillips High-resolution crystal structures of distal histidine mutants of sperm whale myoglobin J. Mol. Biol. 234 1993 140 155
24. E.K. Monson, G.S. Ditta, and D.R. Helinski The oxygen sensor protein, FixL, of Rhizobium meliloti. Role of histidine residues in heme binding, phosphorylation, and signal transduction J. Biol. Chem. 270 1995 5243 5250
25. V. Balland, L. Bouzhir-Sima, L. Kiger, M.C. Marden, M.H. Vos, U. Liebl, and T.A. Mattioli Role of arginine 220 in the oxygen sensor FixL from Bradyrhizobium japonicum J. Biol. Chem. 280 2005 15279 15288
26. S. Taguchi Binding of oxygen and carbon monoxide to a heme-regulated phosphodiesterase from Escherichia coli. Kinetics and infrared spectra of the full-length wild-type enzyme, isolated PAS domain, and Met-95 mutants J. Biol. Chem. 279 2004 3340 3347
27. M.W. Adams The structure and mechanism of iron-hydrogenases Biochim. Biophys. Acta 1020 1990 115 145
28. M.L. Ghirardi, R.K. Togasaki, and M. Seibert Oxygen sensitivity of algal H-2-production Appl. Biochem. Biotechnol. 63-65 1997 141 151
29. M.A. Gilles-Gonzalez, A.I. Caceres, E.H. Sousa, D.R. Tomchick, C. Brautigam, C. Gonzalez, and M. Machius A proximal arginine R206 participates in switching of the Bradyrhizobium japonicum FixL oxygen sensor J. Mol. Biol. 360 2006 80 89