Transcriptional profiling of the parr-smolt transformation in Atlantic salmon

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 7, Issue 4, 2012, Pages 351-360

  Robertson, Laura S ^a   McCormick, Stephen D ^b  

^a LEETOWN SCIENCE CENTER   (United States)

^b U S GEOLOGICAL SURVEY   (United States)

Author keywords

Expression; Microarray; Parr; Salmon; Smolt; Transcriptome

Indexed keywords

ADENOSINE TRIPHOSPHATASE (POTASSIUM SODIUM); DNA; HYDROCORTISONE; MESSENGER RNA; THYROID HORMONE;

ANIMAL TISSUE; ARTICLE; ATLANTIC SALMON; BIOTRANSFORMATION; DNA MICROARRAY; ELECTRON TRANSPORT; ENZYME ACTIVITY; FEMALE; GENE EXPRESSION; GENETIC TRANSCRIPTION; GILL; HYPOTHALAMUS; LIVER; MALE; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OXYGEN TRANSPORT; PARR SMOLT TRANSFORMATION; PERCEPTION; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN FOLDING; PROTEIN SYNTHESIS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; ROSETTE FORMATION; SMOLT;

SALMO SALAR;

EID: 84870248688     PISSN: 1744117X     EISSN: 18780407     Source Type: Journal    
DOI: 10.1016/j.cbd.2012.07.003     Document Type: Article

References (56)

1. T. Agustsson, K. Sundell, T. Sakamoto, M. Ando, and B.T. Bjornsson Pituitary gene expression of somatolactin, prolactin, and growth hormone during Atlantic salmon parr-smolt transformation Aquaculture 222 2003 229 238 (Pubitemid 36530763)
2. N. Aubin-Horth, C.R. Landry, B.H. Letcher, and H.A. Hofmann Alternative life histories shape brain gene expression profiles in males of the same population Proc. R. Soc. Biol. Sci. B 272 2005 1655 1662 (Pubitemid 41414672)
3. N. Aubin-Horth, B.H. Letcher, and H.A. Hofmann Gene-expression signatures of Atlantic salmon's plastic life cycle Gen. Comp. Endocrinol. 163 2009 278 284
4. R.L. Blake, F.L. Roberts, and R.L. Saunders Parr-smolt transformation of Atlantic salmon (Salmo salar): activities of two respiratory enzymes and concentrations of mitochondria in the liver Can. J. Fish. Aquat. Sci. 41 1984 199 203
5. B.A. Block, J. Obrien, and G. Meissner Characterization of the sarcoplasmic-reticulum proteins in the thermogenic muscles of fish J. Cell Biol. 127 1994 1275 1287 (Pubitemid 24362562)
6. J. Bobe, T. Nguyen, S. Mahe, and P. Monget In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte BMC Genomics 9 2008 (Article No.: 499)
7. J.B. Carey, and S.D. McCormick Atlantic salmon smolts are more responsive to an acute handling and confinement stress than parr Aquaculture 168 1998 237 253 (Pubitemid 28547908)
8. E.E. Deane, and N.Y.S. Woo Differential gene expression associated with euryhalinity in sea bream (Sparus sarba) Am. J. Physiol. 287 2004 R1054 R1063
9. W.W. Dickhoff, L.C. Folmar, and A. Gorbman Changes in plasma thyroxine during smoltification of coho salmon, Oncorhynchus kisutch Gen. Comp. Endocrinol. 36 1978 229 232 (Pubitemid 9119074)
10. A.H. Dittman, and T.P. Quinn Homing in Pacific salmon: mechanisms and ecological basis J. Exp. Biol. 199 1996 83 91 (Pubitemid 126603940)
11. A.H. Dittman, T.P. Quinn, and G.A. Nevitt Timing of imprinting to natural and artificial odors by coho salmon (Oncorhynchus kisutch) Can. J. Fish. Aquat. Sci. 53 1996 434 442 (Pubitemid 126514911)
12. J.P. Dukes, R. Deaville, M.W. Bruford, A.F. Youngson, and W.C. Jordan Odorant receptor gene expression changes during the parr-smolt transformation in Atlantic salmon Mol. Ecol. 13 2004 2851 2857 (Pubitemid 39151640)
13. L.O.E. Ebbesson, P. Deviche, and S.O.E. Ebbesson Distribution and changes in mu- and kappa-opiate receptors during the midlife neurodevelopmental period of coho salmon, Oncorhynchus kisutch J. Comp. Neurol. 366 1996 448 464
14. L.O.E. Ebbesson, S.O.E. Ebbesson, T.O. Nilsen, S.O. Stefansson, and B. Holmqvist Exposure to continuous light disrupts retinal innervation of the preoptic nucleus during parr-smolt transformation in Atlantic salmon Aquaculture 273 2007 345 349 (Pubitemid 350191919)
15. L.O.E. Ebbesson, T.O. Nilsen, J.V. Helvik, V. Tronci, and S.O. Stefansson Corticotropin-releasing factor neurogenesis during midlife development in salmon: genetic, environmental and thyroid hormone regulation J. Neuroendocrinol. 23 2011 733 741
16. R. Edgar, M. Domrachev, and A.E. Lash Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res. 30 2002 207 210 (Pubitemid 34679544)
17. S.L. Fowler, D. Hamilton, and S. Currie A comparison of the heat shock response in juvenile and adult rainbow trout (Oncorhynchus mykiss) - implications for increased thermal sensitivity with age Can. J. Fish. Aquat. Sci. 66 2009 91 100
18. A. Guiry, D. Flynn, S. Hubert, A.M. O'Keeffe, O. LeProvost, S.L. White, P.F. Forde, P. Davoren, B. Houeix, T.J. Smith, D. Cotter, N.P. Wilkins, and M.T. Cairns Testes and brain gene expression in precocious male and adult maturing Atlantic salmon (Salmo salar) BMC Genomics 11 2010 (Article No.: 211)
19. G. Hardiman, and F. Gannon Differential transferrin gene expression in Atlantic salmon (Salmo salar L.) freshwater parr and seawater smolts J. Appl. Ichthyol. 12 1996 43 47 (Pubitemid 126619839)
20. C. Infante, M. Ponce, and M. Manchado Duplication of calsequestrin genes in teleosts: molecular characterization in the Senegalese sole (Solea senegalensis) Comp. Biochem. Physiol. B 158 2011 304 314
21. H.C. Ingerslev, C. Cunningham, and H.I. Wergeland Cloning and expression of TNF-alpha, IL-1 beta and COX-2 in an anadromous and landlocked strain of Atlantic salmon (Salmo salar L.) during the smolting period Fish Shellfish Immunol. 20 2006 450 461 (Pubitemid 41571243)
22. D.A. Larsen, P. Swanson, and W.W. Dickhoff The pituitary-thyroid axis during the parr-smolt transformation of coho salmon, Oncorhynchus kisutch: quantification of TSH beta mRNA, TSH, and thyroid hormones Gen. Comp. Endocrinol. 171 2011 367 372
23. W.S. Marshall, S.E. Bryson, A. Midelfart, and W.F. Hamilton Low-conductance anion channel activated by cAMP in teleost Cl - secreting cells Am. J. Physiol. 268 1995 R963 R969
24. S.D. McCormick Methods for nonlethal gill biopsy and measurement of Na+, K+ -ATPase activity Can. J. Fish. Aquat. Sci. 50 1993 656 658
25. S.D. McCormick, B.T. Bjornsson, M. Sheridan, C. Eilertson, J.B. Carey, and M. Odea Increased daylength stimulates plasma growth-hormone and gill Na+, K + ATPase in Atlantic Salmon (Salmo salar) J. Comp. Physiol. B 165 1995 245 254
26. S.D. McCormick, L.P. Hansen, T.P. Quinn, and R.L. Saunders Movement, migration, and smolting of Atlantic salmon (Salmo salar) Can. J. Fish. Aquat. Sci. 55 1998 77 92 (Pubitemid 29211890)
27. S.D. McCormick, and R.L. Saunders Preparatory physiological adaptations for marine life of salmonids: osmoregulation, growth, and metabolism Am. Fish. Soc. Symp. 1 1987 211 229
28. S.D. McCormick, J.M. Shrimpton, S. Moriyama, and B.T. Bjornsson Differential hormonal responses of Atlantic salmon parr and smolt to increased daylength: a possible developmental basis for smolting Aquaculture 273 2007 337 344 (Pubitemid 350191918)
29. C. Munro, and G. Stabenfeldt Development of a microtitre plate enzyme immunoassay for the determination of progesterone J. Endocrinol. 101 1984 41 49 (Pubitemid 14166302)
30. T.O. Nilsen, L.O.E. Ebbesson, S.S. Madsen, S.D. McCormick, E. Andersson, B.T. Bjornsson, P. Prunet, and S.O. Stefansson Differential expression of gill Na+, K+-ATPase alpha- and beta-subunits, Na+, K+,2Cl(-) cotransporter and CFTR anion channel in juvenile anadromous and landlocked Atlantic salmon Salmo salar J. Exp. Biol. 210 2007 2885 2896 (Pubitemid 47401657)
31. P.A. Olsvik, K.K. Lie, A.E. Jordal, T.O. Nilsen, and I. Hordvik Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon BMC Mol. Biol. 6 2005 21
32. A.M. O'Keeffe, S. Hubert, M. Voisin, B. Houeix, D. Cotter, and M.T. Cairns Somatolactin mRNA expression during the parr-smolt transformation in hatchery-reared Atlantic salmon Salmo salar smolts J. Fish Biol. 73 2008 436 443
33. K. Okuzawa, M. Amano, M. Kobayashi, K. Aida, I. Hanyu, Y. Hasegawa, and K. Miyamoto Differences in salmon GNRH and chicken GNRH-II contents in discrete brain-areas of male and female rainbow trout according to age and stage of maturity Gen. Comp. Endocrinol. 80 1990 116 126 (Pubitemid 20327199)
34. Y.H. Ou, P.H. Chung, F.F. Hsu, T.P. Sun, W.Y. Chang, and S.Y. Shieh The candidate tumor suppressor BTG3 is a transcriptional target of p53 that inhibits E2F1 EMBO J. 26 2007 3968 3980
35. F. Pan, J. Zarate, A. Choudhury, R. Rupprecht, and T.M. Bradley Osmotic stress of salmon stimulates upregulation of a cold inducible RNA binding protein (CIRP) similar to that of mammals and amphibians Biochimie 86 2004 451 461 (Pubitemid 39092708)
36. F. Protasi, C. Paolini, and M. Dainese Calsequestrin-1: a new candidate gene for malignant hyperthermia and exertional/environmental heat stroke J. Physiol. 587 2009 3095 3100
37. M.K. Purcell, K.M. Nichols, J.R. Winton, G. Kurath, G.H. Thorgaard, P. Wheeler, J.D. Hansen, R.P. Herwig, and L.K. Park Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus Mol. Immunol. 43 2006 2089 2106
38. M.S. Rajeevan, S.D. Vernon, N. Taysavang, and E.R. Unger Validation of array-based gene expression profiles by real-time (kinetic) RT-PCR J. Mol. Diagn. 3 2001 26 31 (Pubitemid 32266148)
39. M.L. Rise, S.R.M. Jones, G.D. Brown, K.R. von Schalburg, W.S. Davidson, and B.F. Koop Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection Physiol. Genomics 20 2004 21 35 (Pubitemid 40388502)
40. M.L. Rise, K.R. von Schalburg, G.D. Brown, M.A. Mawer, R.H. Devlin, N. Kuipers, M. Busby, M. Beetz-Sargent, R. Alberto, A.R. Gibbs, P. Hunt, R. Shukin, J.A. Zeznik, C. Nelson, S.R.M. Jones, D.E. Smailus, S.J.M. Jones, J.E. Schein, M.A. Marra, Y.S.N. Butterfield, J.M. Stott, S.H.S. Ng, W.S. Davidson, and B.F. Koop Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics Genome Res. 14 2004 478 490 (Pubitemid 38380403)
41. A.I. Saeed, V. Sharov, J. White, J. Li, W. Liang, N. Bhagabati, J. Braisted, M. Klapa, T. Currier, M. Thiagarajan, A. Sturn, M. Snuffin, A. Rezantsev, D. Popov, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush, and J. Quackenbush TM4: a free, open-source system for microarray data management and analysis Biotechniques 34 2003 374 378 (Pubitemid 36184095)
42. T. Sakamoto, T. Hirano, S.S. Madsen, R.S. Nishioka, and H.A. Bern Insulin-like growth factor I gene expression during parr-smolt transformation of coho salmon Zool. Sci. 12 1995 249 252
43. A. Schroeder, O. Mueller, S. Stocker, R. Salowsky, M. Leiber, M. Gassmann, S. Lightfoot, W. Menzel, M. Granzow, and T. Ragg The RIN: an RNA integrity number for assigning integrity values to RNA measurements BMC Mol. Biol. 7 2006 (Article No.: 3)
44. P.J. Seear, S.N. Carmichael, R. Talbot, J.B. Taggart, J.E. Bron, and G.E. Sweeney Differential gene expression during smoltification of Atlantic salmon (Salmo salar L.): a first large-scale microarray study Mar. Biotechnol. 12 2010 126 140
45. M. Seidelin, S.S. Madsen, C.P. Cutler, and G. Cramb Expression of gill vacuolar-type H+-ATPase B subunit, and Na+, K+-ATPase alpha1 and beta1 subunit messenger RNAs in smolting Salmo salar Zoolog. Sci. 18 2001 315 324
46. M.A. Sheridan Alterations in lipid-metabolism accompanying smoltification and seawater adaptation of salmonid fish Aquaculture 82 1989 191 203
47. F.A. Siebzehnrubl, R. Buslei, I.Y. Eyupoglu, S. Seufert, E. Hahnen, and I. Blumcke Histone deacetylase inhibitors increase neuronal differentiation in adult forebrain precursor cells Exp. Brain Res. 176 2007 672 678 (Pubitemid 46175198)
48. T.D. Singer, K.M. Clements, J.W. Semple, P.M. Schulte, J.S. Bystriansky, B. Finstad, I.A. Fleming, and R.S. McKinley Seawater tolerance and gene expression in two strains of Atlantic salmon smolts Can. J. Fish. Aquat. Sci. 59 2002 125 135 (Pubitemid 34190637)
49. J.L. Specker, and C.B. Schreck Thyroidal response to mammalian thyrotropin during smoltification of coho salmon (Oncorhynchus kisutch) Comp. Biochem. Physiol. A 78 1984 441 444 (Pubitemid 14097731)
50. J.D. Storey, and R. Tibshirani Statistical significance for genomewide studies Proc. Natl. Acad. Sci. U. S. A. 100 2003 9440 9445 (Pubitemid 37033947)
51. C.V. Sullivan, W.W. Dickhoff, C.V.W. Mahnken, and W.K. Hershberger Changes in the hemoglobin system of the Coho Salmon Oncorhynchus kisutch during smoltification and triiodothyronine and propylthiouracil treatment Comp. Biochem. Physiol. A 81 1985 807 813 (Pubitemid 15064975)
52. D.W. Towle, R.P. Henry, and N.B. Terwilliger Microarray-detected changes in gene expression in gills of green crabs (Carcinus maenas) upon dilution of environmental salinity Comp. Biochem. Physiol. D 6 2011 115 125
53. K.R. von Schalburg, S.P. McCarthy, M.L. Rise, J.C. Hutson, W.S. Davidson, and B.F. Koop Expression of morphogenic genes in mature ovarian and testicular tissues: potential stem-cell niche markers and patterning factors Mol. Reprod. Dev. 73 2006 142 152 (Pubitemid 43054338)
54. K.R. von Schalburg, M.L. Rise, G.D. Brown, W.S. Davidson, and B.F. Koop A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary Biol. Reprod. 72 2005 687 699 (Pubitemid 40279848)
55. K.R. von Schalburg, M.L. Rise, G.A. Cooper, G.D. Brown, A.R. Gibbs, C.C. Nelson, W.S. Davidson, and B.F. Koop Fish and chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microarray BMC Genomics 6 2005 (Article No.: 126)
56. T. Yada, T. Kobayashi, A. Urano, and T. Hirano Changes in growth hormone and prolactin messenger ribonucleic acid levels during seawater adaptation of amago salmon Oncorhynchus rhodurus J. Exp. Zool. 262 1992 420 425