MicroRNA response elements-mediated miRNA-miRNA interactions in prostate cancer

Advances in Bioinformatics

Volumn 2012, Issue , 2012, Pages

  Alshalalfa, Mohammed ^a,b  

^a UNIVERSITY OF CALGARY   (Canada)

^b PALESTINE POLYTECHNIC UNIVERSITY   (Palestine)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84870182120     PISSN: 16878027     EISSN: 16878035     Source Type: Journal    
DOI: 10.1155/2012/839837     Document Type: Review

References (25)

1. Ruvkun G., Molecular biology: glimpses of a tiny RNA world. Science 2001 294 5543 797 799 2-s2.0-0035955406 10.1126/science.1066315 (Pubitemid 33032085)
2. Sevli S., Uzumcu A., Solak M., Ittmann M., Ozen M., The function of microRNAs, small but potent molecules, in human prostate cancer. Prostate Cancer and Prostatic Diseases 2010 13 3 208 217 2-s2.0-77955710827 10.1038/pcan.2010.21
3. Gordanpour A., Nam R. K., Sugar L., Seth A., MicroRNAs in prostate cancer: from biomarkers to molecularly-based therapeutics. Prostate Cancer and Prostatic Diseases 2012 1 6 2-s2.0-84856809073 10.1038/pcan.2012.3
4. He L., Hannon G. J., MicroRNAs: small RNAs with a big role in gene regulation. Nature Reviews Genetics 2004 5 8 631 2-s2.0-3442889162 10.1038/nrg1415 (Pubitemid 39005758)
5. Pang Y., Young C. Y. F., Yuan H., MicroRNAs and prostate cancer. Acta Biochimica et Biophysica Sinica 2010 42 6 363 369 2-s2.0-77953010951 10.1093/abbs/gmq038
6. Zhang B., Pan X., Cobb G. P., Anderson T. A., microRNAs as oncogenes and tumor suppressors. Developmental Biology 2007 302 1 1 12 2-s2.0-33846188098 10.1016/j.ydbio.2006.08.028 (Pubitemid 46096921)
7. Calin G. A., Croce C. M., MicroRNA signatures in human cancers. Nature Reviews Cancer 2006 6 11 857 866 2-s2.0-33750370444 10.1038/nrc1997 (Pubitemid 44629897)
8. Hsu S. D., Lin F. M., Wu W. Y., Liang C., Huang W. C., Chan W. L., Tsai W. T., Chen G. Z., Lee C. J., Chiu C. M., Chien C. H., Wu M. C., Huang C. Y., Tsou A. P., Huang H. D., Mirtarbase: a database curates experimentally validated microRNA-target interactions. Nucleic Acids Research 2011 39 1 D163 D169 2-s2.0-78651266827 10.1093/nar/gkq1107
9. Esquela-Kerscher A., Slack F. J., Oncomirs-microRNAs with a role in cancer. Nature Reviews Cancer 2006 6 4 259 269 2-s2.0-33645294070 10.1038/nrc1840
10. Ozen M., Creighton C. J., Ozdemir M., Ittmann M., Widespread deregulation of microRNA expression in human prostate cancer. Oncogene 2008 27 12 1788 1793 2-s2.0-40749090479 10.1038/sj.onc.1210809 (Pubitemid 351380263)
11. Grimson A., Farh K. K. H., Johnston W. K., Garrett-Engele P., Lim L. P., Bartel D. P., MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Molecular Cell 2007 27 1 91 105 2-s2.0-34250805982 10.1016/j.molcel.2007.06.017 (Pubitemid 46991392)
12. Krek A., Grün D., Poy M. N., Wolf R., Rosenberg L., Epstein E. J., MacMenamin P., Da Piedade I., Gunsalus K. C., Stoffel M., Rajewsky N., Combinatorial microRNA target predictions. Nature Genetics 2005 37 5 495 500 2-s2.0-20944450160 10.1038/ng1536 (Pubitemid 40617277)
13. Satoh J. I., Tabunoki H., Comprehensive analysis of human microRNA target networks. Biodata Mining 2011 4 1 17 2-s2.0-79958851546 10.1186/1756-0381-4-17
14. Jayaswal V., Lutherborrow M., Ma D. D. F., Yang Y. H., Identification of microRNA-mRNA modules using microarray data. BMC Genomics 2011 12 138 2-s2.0-79952199699 10.1186/1471-2164-12-138
15. Huang J. C., Babak T., Corson T. W., Chua G., Khan S., Gallie B. L., Hughes T. R., Blencowe B. J., Frey B. J., Morris Q. D., Using expression profiling data to identify human microRNA targets. Nature Methods 2009 4 12 1045 1049 2-s2.0-36749005527 (Pubitemid 350201777)
16. Poliseno L., Salmena L., Zhang J., Carver B., Haveman W. J., Pandolfi P. P., A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 2010 465 7301 1033 1038 2-s2.0-77953957633 10.1038/nature09144
17. Sumazin P., Yang X., Chiu H.-S., Chung W.-J., Iyer A., Llobet-Navas D., Rajbhandari P., Bansal M., Guarnieri P., Silva J., Califano A., An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell 2011 147 2 370 381 2-s2.0-80054689794 10.1016/j.cell.2011.09.041
18. Smoot M., Ono K., Ruscheinski J., Wang P., Ideker T., Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011 27 3 431 432 2-s2.0-79551587720
19. Merico D., Isserlin R., Stueker O., Emili A., Bader G. D., Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLos one 2010 15 11 e13984 2-s2.0-78649775562
20. Xiao F., Zuo Z., Cai G., Kang S., Gao X., Li T., Mirecords: an integrated resource for microRNA-target interactions. Nucleic Acids Research 2009 37 1 D105 D110 2-s2.0-58149186499 10.1093/nar/gkn851
21. Taylor B. S., Schultz N., Hieronymus H., Gopalan A., Xiao Y., Carver B. S., Arora V. K., Kaushik P., Cerami E., Reva B., Antipin Y., Mitsiades N., Landers T., Dolgalev I., Major J. E., Wilson M., Socci N. D., Lash A. E., Heguy A., Eastham J. A., Scher H. I., Reuter V. E., Scardino P. T., Sander C., Sawyers C. L., Gerald W. L., Integrative genomic profiling of human prostate cancer. Cancer Cell 2010 18 1 11 22 2-s2.0-77954255681 10.1016/j.ccr.2010.05.026
22. Wach S., Nolte E., Szczyrba J., Stöhr R., Hartmann A., Orntoft T., Dyrskjot L., Eltze E., Wieland W., Keck B., Ekici A. B., Grässer F., Wullich B., MicroRNA profiles of prostate carcinoma detected by multiplatform microRNA screening. International Journal of Cancer 2012 130 611 621 2-s2.0-79955680136
23. Tusher V. G., Tibshirani R., Chu G., Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences of the United States of America 2001 98 9 5116 5121 2-s2.0-0035942271 10.1073/pnas.091062498 (Pubitemid 32397092)
24. Hornberg J. J., Bruggeman F. J., Westerhoff H. V., Lankelma J., Cancer: a systems biology disease. Biosystems 2006 83 2-3 81 90 2-s2.0-32044451325 10.1016/j.biosystems.2005.05.014 (Pubitemid 43199809)
25. Hudson R. S., Yi M., Esposito D., Watkins S. K., Yfantis H. G., Lee D. H., Borin J. F., Naslund M. J., Alexander R. B., Dorsey T. H., Stephens R. M., Croce C. M., Ambs S., MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer. Nucleic Acids Research 2012 40 8 3689 3703 2-s2.0-84860363146 10.1093/nar/gkr1222