-
2
-
-
84856732719
-
Structural bistability of the GAL regulatory network and characterization of its domains of attraction
-
Cosentino C, Salerno L, Passanti A, Merola A, Bates DG, Amato F. 2012. Structural bistability of the GAL regulatory network and characterization of its domains of attraction. J Comput Biol 19:148-62.
-
(2012)
J Comput Biol
, vol.19
, pp. 148-162
-
-
Cosentino, C.1
Salerno, L.2
Passanti, A.3
Merola, A.4
Bates, D.G.5
Amato, F.6
-
3
-
-
32444446240
-
Gene regulatory networks and the evolution of animal body plans
-
Davidson EH, Erwin DH. 2006. Gene regulatory networks and the evolution of animal body plans. Science's STKE 311:796.
-
(2006)
Science's STKE
, vol.311
, pp. 796
-
-
Davidson, E.H.1
Erwin, D.H.2
-
4
-
-
67649524640
-
Isolation of active regulatory elements from eukaryotic chromatin using faire (formaldehyde assisted isolation of regulatory elements)
-
Giresi PG, Lieb JD. 2009. Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). Methods 48:233-9.
-
(2009)
Methods
, vol.48
, pp. 233-239
-
-
Giresi, P.G.1
Lieb, J.D.2
-
5
-
-
13444304173
-
Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila
-
DOI 10.1038/nature03235
-
Gompel N, Prud'homme B, Wittkopp PJ, Kassner VA, Carroll SB. 2005. Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature 433:481-7. (Pubitemid 40204298)
-
(2005)
Nature
, vol.433
, Issue.7025
, pp. 481-487
-
-
Gompel, N.1
Prud'Homme, B.2
Wittkopp, P.J.3
Kassner, V.A.4
Carroll, S.B.5
-
6
-
-
78149421254
-
Dream4: Combining genetic and dynamic information to identify biological networks and dynamical models
-
Greenfield A, Madar A, Ostrer H, Bonneau R. 2010. DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models. PloS One 5:e13397.
-
(2010)
PloS One
, vol.5
-
-
Greenfield, A.1
Madar, A.2
Ostrer, H.3
Bonneau, R.4
-
7
-
-
77953255983
-
A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers
-
Lefebvre C, Rajbhandari P, Alvarez MJ, Bandaru P, Lim WK, Sato M, Wang K, Sumazin P, Kustagi M, Bisikirska BC. 2010. A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers. Mol Syst Biol 6:377.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 377
-
-
Lefebvre, C.1
Rajbhandari, P.2
Alvarez, M.J.3
Bandaru, P.4
Lim, W.K.5
Sato, M.6
Wang, K.7
Sumazin, P.8
Kustagi, M.9
Bisikirska, B.C.10
-
8
-
-
78149461178
-
DREAM3: Network inference using dynamic context likelihood of relatedness and the inferelator
-
Madar A, Greenfield A, Vanden-Eijnden E, Bonneau R. 2010. DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator. PloS One 5:e9803.
-
(2010)
PloS One
, vol.5
-
-
Madar, A.1
Greenfield, A.2
Vanden-Eijnden, E.3
Bonneau, R.4
-
9
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Favera RD, Califano A. 2006. ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics 7(Suppl. 1):S7.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 1
-
-
Margolin, A.A.1
Nemenman, I.2
Basso, K.3
Wiggins, C.4
Stolovitzky, G.5
Favera, R.D.6
Califano, A.7
-
10
-
-
37849027508
-
The hedgehog gene family of the cnidarian, nematostella vectensis, and implications for understanding metazoan hedgehog pathway evolution
-
Matus DQ, Magie CR, Pang K, Martindale MQ, Thomsen GH. 2008. The Hedgehog gene family of the cnidarian, Nematostella vectensis, and implications for understanding metazoan Hedgehog pathway evolution. Dev Biol 313:501-18.
-
(2008)
Dev Biol
, vol.313
, pp. 501-518
-
-
Matus, D.Q.1
Magie, C.R.2
Pang, K.3
Martindale, M.Q.4
Thomsen, G.H.5
-
11
-
-
79959853681
-
A gene regulatory network controlling the embryonic specification of endoderm
-
Peter IS, Davidson EH. 2011. A gene regulatory network controlling the embryonic specification of endoderm. Nature 474:635-9.
-
(2011)
Nature
, vol.474
, pp. 635-639
-
-
Peter, I.S.1
Davidson, E.H.2
-
12
-
-
26944448203
-
Homology and ontogeny: Pattern and process in comparative developmental biology
-
DOI 10.1016/j.thbio.2005.09.002, PII S1431761305000431
-
Scholtz G. 2005. Homology and ontogeny: pattern and process in comparative developmental biology. Theory in Biosciences 124:121-43. (Pubitemid 41476444)
-
(2005)
Theory in Biosciences
, vol.124
, Issue.2
, pp. 121-143
-
-
Scholtz, G.1
-
13
-
-
58149490721
-
Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo
-
Smith J, Davidson EH. 2008. Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo. Proc Natl Acad Sci USA 105:20089-94.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 20089-20094
-
-
Smith, J.1
Davidson, E.H.2
-
14
-
-
70849130706
-
Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring
-
Smith J, Davidson EH. 2009. Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring. Proc Natl Acad Sci USA 106:18291-6.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 18291-18296
-
-
Smith, J.1
Davidson, E.H.2
-
15
-
-
80052572095
-
Regeneration in the era of functional genomics and gene network analysis
-
Smith J, Morgan JR, Zottoli SJ, Smith PJ, Buxbaum JD, Bloom OE. 2011. Regeneration in the era of functional genomics and gene network analysis. Biol Bull 221:18-34.
-
(2011)
Biol Bull
, vol.221
, pp. 18-34
-
-
Smith, J.1
Morgan, J.R.2
Zottoli, S.J.3
Smith, P.J.4
Buxbaum, J.D.5
Bloom, O.E.6
-
16
-
-
38449100969
-
A gene regulatory network subcircuit drives a dynamic pattern of gene expression
-
Smith J, Theodoris C, Davidson EH. 2007. A gene regulatory network subcircuit drives a dynamic pattern of gene expression. Science's STKE 318:794.
-
(2007)
Science's STKE
, vol.318
, pp. 794
-
-
Smith, J.1
Theodoris, C.2
Davidson, E.H.3
-
17
-
-
80053539409
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
-
Song L, et al. 2011. Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res 21:1757-67.
-
(2011)
Genome Res
, vol.21
, pp. 1757-1767
-
-
Song, L.1
-
18
-
-
34147128752
-
Homology: A synthetic concept of evolutionary robustness of patterns
-
DOI 10.1111/j.1463-6409.2007.00275.x
-
Szucsich NU, Wirkner CS. 2007. Homology: a synthetic concept of evolutionary robustness of patterns. Zoologica Scripta 36:281-9. (Pubitemid 46558177)
-
(2007)
Zoologica Scripta
, vol.36
, Issue.3
, pp. 281-289
-
-
Szucsich, N.U.1
Wirkner, C.S.2
-
19
-
-
77749264188
-
Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data
-
Yip KY, Alexander RP, Yan KK, Gerstein M. 2010. Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data. PloS One 5:e8121.
-
(2010)
PloS One
, vol.5
-
-
Yip, K.Y.1
Alexander, R.P.2
Yan, K.K.3
Gerstein, M.4
|