Efficient management of multi-version clinical guidelines

Journal of Biomedical Informatics

Volumn 45, Issue 6, 2012, Pages 1120-1136

  Grandi, Fabio ^a   Mandreoli, Federica ^b   Martoglia, Riccardo ^b  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b UNIVERSITY OF MODENA AND REGGIO EMILIA   (Italy)

Author keywords

Multi version clinical guidelines; Personalized access; Semantic indexing; Temporal indexing; XML repositories

Indexed keywords

CLINICAL GUIDELINE; CLINICAL MEDICINE; CONTEXT INFORMATION; MULTI-VERSION; PERSONALIZATION SERVICES; PERSONALIZED ACCESS; SEMANTIC INDEXING; XML REPOSITORIES;

HEALTH CARE;

XML;

ACCESS TO INFORMATION; ARTICLE; CLINICAL EFFECTIVENESS; HUMAN; INFORMATION PROCESSING; PRACTICE GUIDELINE; PRIORITY JOURNAL; VALIDITY;

COMPUTER SYSTEMS; DECISION SUPPORT SYSTEMS, CLINICAL; GUIDELINE ADHERENCE; HUMANS; INTERNET; PRACTICE GUIDELINES AS TOPIC; PROGRAMMING LANGUAGES; SOFTWARE;

EID: 84869868864     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2012.07.005     Document Type: Article

References (75)

1. Clinical practice guidelines: directions for a new program 1990, National Academy Press, Washington, DC. M.J. Field, K.N. Lohr (Eds.).
2. Hutchinson E.A., Baker R. Making use of guidelines in clinical practice 1999, Radcliffe Medical Press, Abingdon, England.
3. Sanders G.D., Nease R.F., Owens D.K. Publishing web-based guidelines using interactive decision models. J. Eval Clin Pract 2001, 7(2):175-189.
4. Gordon C., Christensen J.P. Health telematics for clinical guidelines and protocols 1995, IOS Press, Amsterdam, The Netherlands.
5. Fridsma D.B. Special issue on workflow management and clinical guidelines. AIM J. 2001, 22(1):1-80.
6. Computer-based medical guidelines and protocols: a primer and current trends. Studies in health technology and informatics 2008, vol. 139. IOS Press, Amsterdam, The Netherlands.
7. NGC. National Guideline Clearinghouse. US Agency for Healthcare Research and Quality; 2010. <>. http://www.guideline.gov/.
8. NLG. National Library of Guidelines. UK National Institute for Health and Clinical Excellence; 2010. <>. http://www.library.nhs.uk/GUIDELINESFINDER/.
9. De Clerq P, Kaiser K, Hasman A. Computer-interpretable guideline formalisms. In: [6]; 2008. p. 22-43.
10. Cabana M.D., Rand C.S., Powe N.R., Wu A.W., Wilson M.H., Abboud P.-A.C., et al. Why don't physicians follow clinical practice guidelines? A framework for improvement. J Am Med Assoc 1999, 282(15):1458-1465.
11. Mello M.M. Of swords and shields: the role of clinical practice guidelines in medical malpractice litigation. Univ Penn Law Rev 2001, 149(3):645-710.
12. XML. The eXtensible Markup Language Home Page. W3C Consortium; 2010. <>. http://www.w3c.org/XML/
13. Dubey AK, Chueh HC. An XML-based Format for Guideline Interchange and Execution. In: Proc AMIA. Los Angeles, CA; 2000. p. 205-09.
14. Shiffman R.N., Karras B.T., Agrawal A., Chen R., Marenco L., Nath S. GEM a proposal for a more comprehensive guideline document model using XML. J AMIA 2000, 7(5):488-497.
15. Votruba P, Miksch S, Kosara R. Facilitating knowledge maintenance of clinical guidelines and protocols. In: Proc MedInfo 2004. San Francisco, CA; 2004. p. 57-61.
16. Buchtela D, PeleŠka J, Veselý A, Zvárová J, Zvolský M. Formalization of clinical practice guidelines. In: Proc MIE. Göteborg, Sweden; 2008. p. 151-56.
17. Shahar Y., Young O., Shalom E., Galperin M., Mayaffit A., Moskovitch R., et al. A framework for a distributed, hybrid, multiple-ontology clinical-guideline library, and automated guideline-support tools. J Biomed Inform 2004, 37(5):325-344.
18. Shahar Y., Miksch S., Johnson P. The asgaard project: a task-specific framework for the application and critiquing of time-oriented clinical guidelines. Artif Intell Med 1998, 14:29-51.
19. Peleg M, Boxwala AA, Onguyemi O, Zeng Q, Tu S, Lacson R, et al. GLIF3: the evolution of a guideline representation format. In: Proc AMIA. San Antonio, TX; 2002. p. 645-49.
20. Fervers B., Burgers J.S., Haugh M.C., Latreille J., Mlika-Cabanne N., Paquet L., et al. Adaptation of clinical guidelines: literature review and proposition for a framework and procedure. Int J Qual Health Care 2006, 18(3):167-176.
21. Groot P, Hommerson A, Lucas P. Adaptation of clinical practice guidelines. In: [6]; 2008. p. 121-39 [chapter 7].
22. Kaiser K., Miksch S. Versioning computer-interpretable guidelines: semi-automatic modeling of 'Living Guidelines' using an information extraction method. Artif Intell Med 2009, 46:55-66.
23. Terenziani P, Montani S, Bottrighi A, Torchio M, Molino G, Correndo G. A context-adaptable approach to clinical guidelines. In: Proc MEDINFO. San Franscisco, CA; 2004. p. 169-73.
24. Grandi F, Mandreoli F, Martoglia R. Issues in personalized access to multi-version XML documents. In: Pardede E, editor. Open and novel issues in XML database applications. Information Science reference. Hershey, PA: IGI Global; 2009. p. 199-230.
25. Katz R.H. Toward a unified framework for version modeling in engineering databases. ACM Comput Surv 1990, 22(4):375-408.
26. Conradi R., Westfechtel B. Version models for software configuration management. ACM Comput Surv 1998, 30(2):232-282.
27. Roddick J.F. A survey of schema versioning issues for database systems. Inf Softw Technol 1995, 37(7):383-393.
28. De Castro C., Grandi F., Scalas M.R. Schema versioning for multitemporal relational databases. Inf Syst 1997, 22(5):249-290.
29. Grandi F., Mandreoli F. A formal model for temporal schema versioning in object-oriented databases. Data Knowl Eng 2003, 46(2):123-167.
30. Gal A., Etzion O. A multiagent update process in a database with temporal data dependencies and schema versioning. IEEE Trans Knowl Data Eng 1998, 10(1):21-37.
31. Grandi F. Introducing an annotated bibliography on temporal and evolution aspects in the world wide web. ACM SIGMOD Record 2004, 33(2):84-86.
32. Grandi F., Mandreoli F., Tiberio P. Temporal modelling and management of normative documents in XML format. Data Knowl Eng 2005, 54(3):327-354.
33. Grandi F., Mandreoli F., Martoglia R., Ronchetti E., Scalas M.R., Tiberio P. Ontology-based personalization of E-government services. Intelligent user interfaces. Information science reference 2009, 167-203. IGI Global, Hershey, PA. C. Mourlas, P. Germanakos (Eds.).
34. Owens D.K., Nease R.F. A normative analytic framework for development of practice guidelines for specific clinical populations. Med Decis Making 1997, 17:409-426.
35. Sanders GD. Automated creation of clinical-practice guidelines from decision models, Ph.D. Thesis. Stanford medical informatics. Stanford University, CA; 1998.
36. Tu S.W., Peleg M., Carini S., Bobak M., Ross J., Rubin D., et al. A practical method for transforming free-text eligibility criteria into computable criteria. J Biomed Inform 2011, 44(2):239-250.
37. Fridsma DB, Gennari JH, Musen MA. Making Generic Guidelines Site-specific. In: Proc AMIA. Washington, DC; 1996. p. 597-601.
38. Scott-Wright AO, Fischer RP, Denekamp Y, Boxwala AA. A Methodology for Modular representation of Guidelines. In: Proc MEDINFO; 2004. p. 149-53.
39. Boxwala AA, Zeng Q, Tate D, Greenes RA, Fairchild DG. Applying axiomatic design methodology to create guidelines that are locally adaptable. In: Proc AMIA. San Antonio, TX; 2002. p. 980.
40. Peleg M, Kantor R. Approaches for guideline versioning using GLIF. In: Proc AMIA. Washington, DC; 2003. p. 509-13.
41. Terenziani P, Montani S, Bottrighi A, Molino G, Torchio M. Clinical guidelines adaptation: managing authoring and versioning issues. In: Proc AIME. Aberdeen, Scotland; 2005. p. 151-55.
42. Groot P, Hommerson A, Lucas P. Adaptation of clinical practice guidelines. In: [6]; 2008. p. 121-39.
43. Kaiser K., Miksch S. Versioning computer-interpretable guidelines: semi-automatic modeling of 'living guidelines' using an information extraction method. Artif Intell Med 2009, 46:55-66.
44. Jensen C.S., Dyreson C.E., Böhlen M.H., Clifford J., Elmasri R., Gadia S.K., et al. The consensus glossary of temporal database concepts - February 1998 version. Temporal databases: research and practice, LNCS 1399 1998, 367-405. Springer-Verlag, Heidelberg, Germany. O. Etzion, S. Jajodia, S. Sripada (Eds.).
45. Combi C, Montanari A. Data models with multiple temporal dimensions: completing the picture. In: Proc CaiSE. Interlaken, Switzerland; 2001. p. 187-202.
46. Kim SK, Chakravarthy S. Modeling time: adequacy of three distinct time concepts for temporal databases. In: Proc ER. Arlington, TX; 1993. p. 475-91.
47. Dyreson C.E., Grandi F. Temporal XML. Encyclopedia of database systems 2009, 3032-3035. Springer-Verlag, Heidelberg, Germany. L. Liu, M.T. özsu (Eds.).
48. Guarino N. Formal ontology in information systems 1998, IOS Press, Amsterdam, The Netherlands.
49. Gruber T. Ontology. Encyclopedia of database systems 2010, 1963-1965. Springer-Verlag, Heidelberg, Germany. L. Liu, M.T. özsu (Eds.).
50. Berners-Lee T., Hendler J., Lassila O. The semantic web. Sci Am 2001, 284(5):34-43.
51. OWL. The web ontology language home page. W3C Consortium; 2010. <>. http://www.w3.org/2004/OWL/.
52. ICD-10. International statistical classification of diseases and related health problems - 10th revision. World health organization; 2010. <>. http://www.who.int/classifications/icd/en/.
53. MeSH-C. Medical subject headings - section C: diseases. US National Library of Medicine; 2010. <>. http://www.nlm.nih.gov/mesh/2009/mesh_browser/MeSHtree.C.html.
54. Ruch P., Gobeill J., Lovis C., Geissbühler A. Automatic medical encoding with SNOMED categories. BMC Med Inform Decis Mak 2008, 8(Suppl 1):S6.
55. Ontologies in medicine. Studies in health technologies 2004, vol. 102. IOS Press, Amsterdam, The Netherlands.
56. BMO. Introduction to biomedical terminologies. BMO - the portal for health informatics; 2008. <>. http://biomedicalontologies.com/index.php?/Terminologies/.
57. OPC Ontologies. The open clinical project website; 2010. <>. http://openclinical.org/ontologies.html.
58. Golemati M, Katifori A, Vassilakis C, Lepouras G, Halatsis C. Creating an ontology for the user profile: method and applications. In: Proc RCIS. Ouarzazate, Morocco; 2007. p. 407-12.
59. Grandi F, Scalas MR. The valid ontology: a simple OWL temporal versioning framework. In: Proc SEMAPRO. Sliema, Malta; 2009. p. 98-102.
60. WS-BPEL. The web services business process execution language homepage, OASIS organization; 2010. <>. http://www.oasis-pen.org/committees/tc_home.php?wg_abbrev=wsbpel.
61. XPDL. The XML process definition language homepage. WfMC coalition; 2010. <>. http://www.wfmc.org/standards/docs.htm.
62. Currim F, Currim S, Dyreson CE, Snodgrass RT. A tale of two schemas: creating a temporal schema from a snapshot schema with τXSchema. In: Proc EDBT. Heraklion, Crete; 2004. p. 348-65.
63. Namespaces. Namespaces in XML.W3C consortium; 2010. <>. http://www.w3.org/TR/REC-xml-names/.
64. Grust T. Accelerating XPath location steps. In: Proc SIGMOD. Madison, WI; 2002. p. 109-20.
65. Schubert E, Schaffert S, Bry F. Structure-preserving difference search for XML documents. In: Proc extreme markup languages®. Montreal, Canada; 2005.
66. XQuery. The XML query home page.W3C consortium; 2010. <>. http://www.w3c.org/XML/Query.
67. Xpath. The XML path language.W3C consortium; 2010. <>. http://www.w3c.org/TR/XPath/.
68. The TSQL2 language design committee, the TSQL2 temporal query language 1995, Kluwer Academic Publishing, New York, NY. R.T. Snodgrass (Ed.).
69. Gao D, Snodgrass RT. Temporal slicing in the evaluation of XML queries. In: Proc VLDB. Berlin, Germany; 2003. p. 632-43.
70. Zhang C, Naughton J, DeWitt D, Luo Q, Lohman G. On supporting containment queries in relational database management systems. In: Proc SIGMOD. Santa Barbara, CA; 2001. p. 425-36.
71. Bruno N, Koudas N, Srivastava D. Holistic twig joins: optimal XML pattern matching. In: Proc SIGMOD. Madison, WI; 2002. p. 310-21.
72. Jiang H, Wang W, Lu H, Yu JX. Holistic twig joins on indexed XML documents. In: Proc VLDB. Berlin, Germany; 2003. p. 273-84.
73. Chen T, Lu J, Wang Ling T. On boosting holism in XML twig pattern matching using structural indexing techniques. In: Proc SIGMOD. Baltimore, MD; 2005. p. 455-66.
74. Mandreoli F, Martoglia R, Ronchetti E. Supporting temporal slicing in XML databases. In: Proc EDBT. Munich, Germany; 2006. p. 295-312.
75. Mandreoli F., Martoglia R., Zezula P. Principles of holism for sequential twig pattern matching. VLDB J 2009, 18(6):1369-1392.