Changes in available nitrogen and nematode abundance in response to Brassica seed meal amendment of orchard soil

Soil Biology and Biochemistry

Volumn 57, Issue , 2013, Pages 22-29

  Reardon, C L ^a   Strauss, S L ^a   Mazzola, M ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

A BjSM; A BnSM; BjSM; BnSM; Brassica seed meal; Mineralization; Nematode; Nitric oxide; Nitrification; NO; Orchard soil; QPCR; T RFLP

Indexed keywords

A-BJSM; A-BNSM; BJSM; BNSM; MINERALIZATION; NEMATODE; ORCHARD SOILS; QPCR; SEED MEAL; T-RFLP;

FERTILIZERS; MICROORGANISMS; MINERALOGY; NITRIC OXIDE; NITRIFICATION; NOBELIUM; ORCHARDS; PLANTS (BOTANY); SOILS;

SEED;

ABUNDANCE; MICROBIAL COMMUNITY; NEMATODE; NITROGEN CYCLE; ORCHARD; PLANT RESIDUE; SEED; SOIL MICROORGANISM;

BACTERIA (MICROORGANISMS); BRASSICA; BRASSICA JUNCEA; BRASSICA NAPUS; BRASSICACEAE;

EID: 84869866786     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2012.10.011     Document Type: Article

References (53)

1. Balesh T., Zapata F., Aune J. Evaluation of mustard meal as organic fertiliser on tef (Eragrostis tef (Zucc) Trotter) under field and greenhouse conditions. Nutrient Cycling in Agroecosystems 2005, 73:49-57.
2. Bending G.D., Lincoln S.D. Inhibition of soil nitrifying bacteria communities and their activities by glucosinolate hydrolysis products. Soil Biology & Biochemistry 2000, 32:1261-1269.
3. Borek V., Morra M. Ionic thiocyanate (SCN-) production from 4-hydroxybenzyl glucosinolate contained in Sinapis alba seed meal. Journal of Agricultural and Food Chemistry 2005, 53:8650-8654.
4. Bouwman L.A., Bloem J., Boogert P.H.J.F., Bremer F., Hoenderboom G.H.J., Ruiter P.C. Short-term and long-term effects of bacterivorous nematodes and nematophagous fungi on carbon and nitrogen mineralization in microcosms. Biology and Fertility of Soils 1994, 17:249-256.
5. Braid M.D., Daniels L.M., Kitts C.L. Removal of PCR inhibitors from soil DNA by chemical flocculation. Journal of Microbiological Methods 2003, 52:389-393.
6. Bremner J.M., Douglas L.A. Use of plastic films for aeration in soil incubation experiments. Soil Biology & Biochemistry 1971, 3:289-296.
7. Brown P., Morra M. Control of soil-borne plant pests using glucosinolate-containing plants. Advances in Agronomy 1997, 61:167-231.
8. Brown P.D., Morra M.J. Brassicaceae tissues as inhibitors of nitrification in soil. Journal of Agricultural and Food Chemistry 2009, 57:7706-7711.
9. Bulluck L.R., Barker K.R., Ristaino J.B. Influences of organic and synthetic soil fertility amendments on nematode trophic groups and community dynamics under tomatoes. Applied Soil Ecology 2002, 21:233-250.
10. Buskov S., Serra B., Rosa E., Sørensen H., Sørensen J. Effects of intact glucosinolates and products produced from glucosinolates in myrosinase-catalyzed hydrolysis on the potato cyst nematode (Globodera rostochiensis cv. Woll). Journal of Agricultural and Food Chemistry 2002, 50:690-695.
11. Cohen M.F., Mazzola M. Effects of Brassica napus seed meal amendment on soil populations of resident bacteria and Naegleria americana and the unsuitability of arachidonic acid as a protozoan-specific marker. Journal of Protozoology Research 2006, 6:16-25.
12. Cohen M.F., Mazzola M. Resident bacteria, nitric oxide emission and particle size modulate the effect of Brassica napus seed meal on disease incited by Rhizoctonia solani and Pythium spp. Plant and Soil 2006, 286:75-86.
13. Cohen M.F., Yamasaki H., Mazzola M. Brassica napus seed meal soil amendment modifies microbial community structure, nitric oxide production and incidence of Rhizoctonia root rot. Soil Biology & Biochemistry 2005, 37:1215-1227.
14. Cole R.A. Isothiocyanates, nitriles and thiocyanates as products of autolysis of glucosinolates in Cruciferae. Phytochemistry 1976, 15:759-762.
15. Donn S., Neilson R., Griffiths B.S., Daniell T.J. Greater coverage of the phylum Nematoda in SSU rDNA studies. Biology and Fertility of Soils 2011, 47:333-339.
16. Floyd R., Rogers A.D., Labmbshead J.D., Smith C.R. Nematode-specific PCR primers for the 18S small subunit rRNA gene. Molecular Ecology Notes 2005, 5:611-612.
17. Griffiths B. Microbial-feeding nematodes and protozoa in soil: their effects on microbial activity and nitrogen mineralization in decomposition hotspots and the rhizosphere. Plant and Soil 1994, 164:25-33.
18. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symposium 1999, 41:95-98.
19. Hammer Ø., Harper D.A.T., Ryan P.D. PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 2001, 9.
20. Handiseni M., Brown J., Zemetra R., Mazzola M. Herbicidal activity of Brassicaceae seed meal on wild oat (Avena fatua), Italian ryegrass (Lolium multiflorum), redroot pigweed (Amaranthus retroflexus), and prickly lettuce (Lactuca serriola). Weed Technology 2011, 25:127-134.
21. Handiseni M., Brown J., Zemetra R., Mazzola M. Use of Brassicaceous seed meals to improve seedling emergence of tomato and pepper in Pythium ultimum infested soils. Archives of Phytopathology and Plant Protection 2012, 45:1204-1209.
22. Henderson D.R., Riga E., Ramirez R.A., Wilson J., Snyder W.E. Mustard biofumigation disrupts biological control by Steinernema spp. nematodes in the soil. Biological Control 2009, 48:316-322.
23. Hoagland L., Carpenter-Boggs L., Reganold J.P., Mazzola M. Role of native soil biology in Brassicaceous seed meal-induced weed suppression. Soil Biology & Biochemistry 2008, 40:1689-1697.
24. Ibekwe A.M., Papiernik S.K., Gan J., Yates S.R., Yang C.H., Crowley D.E. Impact of fumigants on soil microbial communities. Applied and Environmental Microbiology 2001, 67:3245-3257.
25. Izzo A.D., Mazzola M. Assessing the utility of a taxonomic macroarray for monitoring fungal community development in soils exhibiting suppression of root disease. Phytopathology 2007, 97:S50.
26. Jensen S.K., Liu Y.-G., Eggum B.O. The effect of heat treatment on glucosinolates and nutritional value of rapeseed meal in rats. Animal Feed Science and Technology 1995, 53:17-28.
27. Kirkegaard J.A., Gardner P.A., Desmarchelier J.M., Angus J.F. Biofumigation using Brassica species to control pests and diseases in horticulture and agriculture. Proceedings 9th Australian Research Assembly on Brassicas 1993, 77-82. Agricultural Research Institute, Wagga Wagga, AU. N. Wratten, R.J. Mailer (Eds.).
28. Laughlin R.J., Stevens R.J. Evidence for fungal dominance of denitrification and codenitrification in a grassland soil. Soil Science Society of America Journal 2002, 66:1540-1548.
29. Maheshwari P., Stanley D., Voort F.R.V.D. Microwave treatment of dehulled rapeseed to inactivate myrosinase and its effect on oil and meal quality. Journal of the American Oil Chemists Society 1980, 57:194-199.
30. Manici L., Lazzeri L., Palmieri S. In vitro fungitoxic activity of some glucosinolates and their enzyme-derived products toward plant pathogenic fungi. Journal of Agricultural and Food Chemistry 1997, 45:2768-2773.
31. Martin K., Rygiewicz P. Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts. BMC Microbiology 2005, 5:28.
32. Matthiessen J., Kirkegaard J. Biofumigation and enhanced biodegradation: opportunity and challenge in soilborne pest and disease management. CRC Critical Reviews in Plant Sciences 2006, 25:235-265.
33. Mazzola M. Elucidation of the microbial complex having a causal role in the development of apple replant disease in Washington. Phytopathology 1998, 88:930-938.
34. Mazzola M. Advances in Brassica seed meal formulation for apple replant disease control. Proceedings Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions 2011, 6.1-6.4. MBAO, Fresno, CA.
35. Mazzola M., Brown J. Efficacy of brassicaceous seed meal formulations for the control of apple replant disease in conventional and organic production systems. Plant Disease 2010, 94:835-842.
36. Mazzola M., Brown J., Zhao X.W., Izzo A.D., Fazio G. Interaction of Brassicaceous seed meal and apple rootstock on recovery of Pythium spp. and Pratylenchus penetrans from roots grown in replant soils. Plant Disease 2009, 93:51-57.
37. Mazzola M., Granatstein D.M., Elfving D.C., Mullinix K. Suppression of specific apple root pathogens by Brassica napus seed meal amendment regardless of glucosinolate content. Phytopathology 2001, 91:673-679.
38. Mazzola M., Zhao X. Brassica juncea seed meal particle size influences chemistry but not soil biology-based suppression of individual agents inciting apple replant disease. Plant and Soil 2010, 337:313-324.
39. Mazzola M., Zhao X., Cohen M.F., Raaijmakers J.M. Cyclic lipopeptide surfactant production by Pseudomonas fluorescens SS101 is not required for suppression of complex Pythium spp. populations. Phytopathology 2007, 97:1348-1355.
40. Mulvaney R.L. Nitrogen-inorganic forms. Methods of Soil Analysis. Part 3. Chemical Methods. Soil Science Society of America Book Series No. 5 1996, 1123-1184. Madison, WI. J.M. Bartels (Ed.).
41. Øvreås L., Torsvik V. Microbial diversity and community structure in two different agricultural soil communities. Microbial Ecology 1998, 36:303-315.
42. Qian Y., Kamel A., Stafford C., Nguyen T., Chism W.J., Dawson J., Smith C.W. Evaluation of the permeability of agricultural films to various fumigants. Environmental Science & Technology 2011, 45:9711-9718.
43. Shoun H., Tanimoto T. Denitrification by the fungus Fusarium oxysporum and involvement of cytochrome P-450 in the respiratory nitrite reduction. Journal of Biological Chemistry 1991, 266:11078-11082.
44. Shurtleff M.C., Averre C.W. Diagnosing Plant Diseases Caused by Nematodes 2000, APS Press, St. Paul, Minnesota, USA.
45. Snyder A., Morra M., Johnson-Maynard J., Thill D. Seed meals from Brassicaceae oilseed crops as soil amendments: influence on carrot growth, microbial biomass nitrogen, and nitrogen mineralization. Hortscience 2009, 44:354-361.
46. 15N-labeled Brassicaceae seed meals. Applied Soil Ecology 2010, 46:73-80.
47. Stromberger M.E., Klose S., Ajwa H., Trout T., Fennimore S. Microbial populations and enzyme activities in soils fumigated with methyl bromide alternatives. Soil Science Society of America Journal 2005, 69:1987-1999.
48. Usuda K., Toritsuka N., Matsuo Y., Kim D., Shoun H. Denitrification by the fungus Cylindrocarpon tonkinense: anaerobic cell growth and two isozyme forms of cytochrome P-450nor. Applied and Environmental Microbiology 1995, 61:883-889.
49. Vilgalys R., Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 1990, 172:4238-4246.
50. Weerakoon D.M.N., Reardon C.L., Paulitz T.C., Izzo A.D., Mazzola M. Long-term suppression of Pythium abappressorium induced by Brassica juncea seed meal amendment is biologically mediated. Soil Biology & Biochemistry 2012, 51:44-52.
51. Wright D., Newall D. Nitrogen excretion, osmotic and ionic regulation in nematodes. The Organization of Nematodes 1976, 163-210. Academic Press, London. C. NA (Ed.).
52. Xiao H., Griffiths B., Chen X., Liu M., Jiao J., Hu F., Li H. Influence of bacterial-feeding nematodes on nitrification and the ammonia-oxidizing bacteria (AOB) community composition. Applied Soil Ecology 2010, 45:131-137.
53. Zasada I., Ferris H. Nematode suppression with brassicaceous amendments: application based upon glucosinolate profiles. Soil Biology & Biochemistry 2004, 36:1017-1024.