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Volumn 9, Issue 11, 2012, Pages 4645-4659

Molecular analysis of the microbial community structures in water-flooding petroleum reservoirs with different temperatures

Author keywords

[No Author keywords available]

Indexed keywords

COMMUNITY STRUCTURE; FLOODING; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS; PETROLEUM HYDROCARBON; RESERVOIR CHARACTERIZATION; TERRESTRIAL ECOSYSTEM;

EID: 84869801713     PISSN: 17264170     EISSN: 17264189     Source Type: Journal    
DOI: 10.5194/bg-9-4645-2012     Document Type: Article
Times cited : (70)

References (51)
  • 1
    • 65549142775 scopus 로고    scopus 로고
    • Anaerobic benzene degradation by Gram-positive sulfatereducing bacteria
    • Abu Laban, N., Selesi, D., Jobelius, C., and Meckenstock, R. U.: Anaerobic benzene degradation by Gram-positive sulfatereducing bacteria, FEMS Microbiol. Ecol., 68, 300-311, 2009.
    • (2009) FEMS Microbiol. Ecol. , vol.68 , pp. 300-311
    • Abu Laban, N.1    Selesi, D.2    Jobelius, C.3    Meckenstock, R.U.4
  • 3
    • 0002638220 scopus 로고
    • The presence of sulphate reducing bacteria in oil field waters
    • Bastin, E. S., Greer, F. E., Merritt, C. A., and Moulton, G.: The presence of sulphate reducing bacteria in oil field waters, Science, 63, 21-24, 1926.
    • (1926) Science , vol.63 , pp. 21-24
    • Bastin, E.S.1    Greer, F.E.2    Merritt, C.A.3    Moulton, G.4
  • 4
    • 0028834912 scopus 로고
    • Thermodesulforhabdus norvegicus gen. nov., sp. nov., a novel thermophilic sulfatereducing bacterium from oil field water
    • Beeder, J., Torsvik, T., and Lien, T.: Thermodesulforhabdus norvegicus gen. nov., sp. nov., a novel thermophilic sulfatereducing bacterium from oil field water, Arch. Microbiol., 164, 331-336, 1995.
    • (1995) Arch. Microbiol. , vol.164 , pp. 331-336
    • Beeder, J.1    Torsvik, T.2    Lien, T.3
  • 5
    • 37449002019 scopus 로고    scopus 로고
    • Microbial community structure analysis of produced water from a hightemperature North Sea oil-field
    • Dahle, H., Garshol, F., Madsen, M., and Birkeland, N.-K.: Microbial community structure analysis of produced water from a hightemperature North Sea oil-field, Antonie van Leeuwenhoek, 93, 37-49, 2008.
    • (2008) Antonie Van Leeuwenhoek , vol.93 , pp. 37-49
    • Dahle, H.1    Garshol, F.2    Madsen, M.3    Birkeland, N.-K.4
  • 6
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • De Long, E. F.: Archaea in coastal marine environments, P. Natl. Acad. Sci., 89, 5685-5689, 1992.
    • (1992) P. Natl. Acad. Sci. , vol.89 , pp. 5685-5689
    • De Long, E.F.1
  • 9
    • 0029875068 scopus 로고    scopus 로고
    • Effect of thiosulphate as electron acceptor on glucose and xylose oxidation by Thermoanaerobacter finnii and a Thermoanaerobacter sp. isolated from oil field water
    • DOI 10.1016/0923-2508(96)80215-4
    • Fardeau, M. L., Faudon, C., Cayol, J. L., Magot, M., Patel, B. K. C., and Ollivier, B.: Effect of thiosulphate as electron acceptor on glucose and xylose oxidation by Thermoanaerobacter finnii and a Thermoanaerobacter sp. isolated from oil field water, Res. Microbiol., 147, 159-165, 1996. (Pubitemid 26109399)
    • (1996) Research in Microbiology , vol.147 , Issue.3 , pp. 159-165
    • Fardeau, M.-L.1    Faudon, C.2    Cayol, J.-L.3    Magot, M.4    Patel, B.K.C.5    Ollivier, B.6
  • 11
    • 44249111438 scopus 로고    scopus 로고
    • Bioenergy production via microbial conversion of residual oil to natural gas
    • DOI 10.1128/AEM.00119-08
    • Gieg, L. M., Duncan, K. E., and Suflita, J. M.: Bioenergy production via microbial conversion of residual oil to natural gas, Appl. Environ. Microb., 74, 3022-3029, 2008. (Pubitemid 351747006)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.10 , pp. 3022-3029
    • Gieg, L.M.1    Duncan, K.E.2    Suflita, J.M.3
  • 12
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I. J.: The population frequencies of species and the estimation of population parameters, Biometrika, 40, 237-264, 1953.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 13
    • 26244434726 scopus 로고    scopus 로고
    • Microbial diversity in production waters of a low-temperature biodegraded oil reservoir
    • DOI 10.1016/j.femsec.2005.05.007, PII S016864960500142X
    • Grabowski, A., Nercessian, O., Fayolle, F., Blanchet, D., and Jeanthon, C.: Microbial diversity in production waters of a lowtemperature biodegraded oil reservoir, FEMS. Microbiol. Ecol., 54, 427-443, 2005. (Pubitemid 41416859)
    • (2005) FEMS Microbiology Ecology , vol.54 , Issue.3 , pp. 427-443
    • Grabowski, A.1    Nercessian, O.2    Fayolle, F.3    Blanchet, D.4    Jeanthon, C.5
  • 15
    • 84871805455 scopus 로고    scopus 로고
    • Diversity and distribution of sulfate-reducing bacteria in four petroleum reservoirs detected by using 16S rRNA and dsrAB genes
    • doi:10.1016/j.ibiod.2012.06.021
    • Guan, J., Xia, L.-P., Wang, L.-Y., Liu, J.-F., Gu, J.-D., and Mu, B.-Z.: Diversity and distribution of sulfate-reducing bacteria in four petroleum reservoirs detected by using 16S rRNA and dsrAB genes, Int. Biodeterior. Biodegrad., 1-9, doi:10.1016/j.ibiod.2012.06.021, 2012.
    • (2012) Int. Biodeterior. Biodegrad. , vol.1-9
    • Guan, J.1    Xia, L.-P.2    Wang, L.-Y.3    Liu, J.-F.4    Gu, J.-D.5    Mu, B.-Z.6
  • 18
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • DOI 10.1093/bioinformatics/bth226
    • Huber, T., Faulkner, G., and Hugenholtz, P.: Bellerophon: a program to detect chimeric sequences in multiple sequence alignments, Bioinformatics, 20, 2317-2319, 2004. (Pubitemid 39341624)
    • (2004) Bioinformatics , vol.20 , Issue.14 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 19
    • 0036737613 scopus 로고    scopus 로고
    • Pelotomaculum thermopropionicum gen. nov., sp. nov., an anaerobic, thermophilic, syntrophic propionateoxidizing bacterium
    • Imachi, H., Sekiguchi, Y., Kamagata, Y., Hanada, S., Ohashi, A., and Harada, H.: Pelotomaculum thermopropionicum gen. nov., sp. nov., an anaerobic, thermophilic, syntrophic propionateoxidizing bacterium, Int. J. Syst. Evol. Microbiol., 52, 1729- 1735, 2002.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1729-1735
    • Imachi, H.1    Sekiguchi, Y.2    Kamagata, Y.3    Hanada, S.4    Ohashi, A.5    Harada, H.6
  • 22
    • 2242442558 scopus 로고    scopus 로고
    • Selection and testing of oligonucleotide primers for amplification sequencing of archaeal 16S rRNA genes
    • Kolganova, T. V., Kuznetsov, B. B., and Turova, T. P.: Selection and testing of oligonucleotide primers for amplification sequencing of archaeal 16S rRNA genes, Mikrobiologiya, 71, 283-285, 2002.
    • (2002) Mikrobiologiya , vol.71 , pp. 283-285
    • Kolganova, T.V.1    Kuznetsov, B.B.2    Turova, T.P.3
  • 23
    • 33645009448 scopus 로고    scopus 로고
    • Molecular analysis of the bacterial community in a continental hightemperature and water-flooded petroleum reservoir
    • Li, H., Yang, S.-Z., Mu, B.-Z., Rong, Z.-F., and Zhang, J.: Molecular analysis of the bacterial community in a continental hightemperature and water-flooded petroleum reservoir, FEMS Microbiol. Lett., 257, 92-98, 2006.
    • (2006) FEMS Microbiol. Lett. , vol.257 , pp. 92-98
    • Li, H.1    Yang, S.-Z.2    Mu, B.-Z.3    Rong, Z.-F.4    Zhang, J.5
  • 24
    • 35148875778 scopus 로고    scopus 로고
    • Phylogenetic diversity of the archaeal community in a continental high-temperature, water-flooded petroleum reservoir
    • DOI 10.1007/s00284-007-9002-y
    • Li, H., Yang, S.-Z., and Mu, B.-Z.: Phylogenetic diversity of the archaeal community in a continental high-temperature, waterflooded petroleum reservoir, Curr. Microbiol., 55, 382-388, 2007a. (Pubitemid 47536821)
    • (2007) Current Microbiology , vol.55 , Issue.5 , pp. 382-388
    • Li, H.1    Yang, S.-Z.2    Mu, B.-Z.3
  • 25
    • 33947239403 scopus 로고    scopus 로고
    • Molecular phylogenetic diversity of the microbial community associated with a high-temperature petroleum reservoir at an offshore oilfield
    • DOI 10.1111/j.1574-6941.2006.00266.x
    • Li, H., Yang, S.-Z., Mu, B.-Z., Rong, Z.-F., and Zhang, J.: Molecular phylogenetic diversity of the microbial community associated with a high-temperature petroleum reservoir at an offshore oilfield, FEMS Microbiol. Ecol., 60, 74-84, 2007b. (Pubitemid 46426574)
    • (2007) FEMS Microbiology Ecology , vol.60 , Issue.1 , pp. 74-84
    • Li, H.1    Yang, S.-Z.2    Mu, B.-Z.3    Rong, Z.-F.4    Zhang, J.5
  • 26
    • 78149471109 scopus 로고    scopus 로고
    • Molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in high temperature petroleum reservoirs
    • Li, H., Chen, S., Mu, B.-Z., and Gu, J.-D.: Molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in high temperature petroleum reservoirs, Microb. Ecol., 60, 771-783, 2010.
    • (2010) Microb. Ecol. , vol.60 , pp. 771-783
    • Li, H.1    Chen, S.2    Mu, B.-Z.3    Gu, J.-D.4
  • 27
    • 79955500554 scopus 로고    scopus 로고
    • Production processes affected prokaryotic amoA gene abundance and distrubution in high-temperature petroleum reservoirs
    • Li, H., Mu, B.-Z., Jiang, Y., and Gu, J.-D.: Production processes affected prokaryotic amoA gene abundance and distrubution in high-temperature petroleum reservoirs, Geomicrobiol. J., 28, 692-704, 2011.
    • (2011) Geomicrobiol. J. , vol.28 , pp. 692-704
    • Li, H.1    Mu, B.-Z.2    Jiang, Y.3    Gu, J.-D.4
  • 28
    • 84862829149 scopus 로고    scopus 로고
    • Microbial community characteristics of petroleum reservoir production water amended with n-alkanes and incubated under nitrate-, sulfate-reducing and methanogenic conditions
    • Li, W., Wang, L.-Y., Duan, R.-Y., Liu, J.-F., Gu, J.-D., and Mu, B.-Z.: Microbial community characteristics of petroleum reservoir production water amended with n-alkanes and incubated under nitrate-, sulfate-reducing and methanogenic conditions, Int. Biodeterior. Biodegrad., 69, 87-96, 2012.
    • (2012) Int. Biodeterior. Biodegrad. , vol.69 , pp. 87-96
    • Li, W.1    Wang, L.-Y.2    Duan, R.-Y.3    Liu, J.-F.4    Gu, J.-D.5    Mu, B.-Z.6
  • 29
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • DOI 10.1128/AEM.71.12.8228-8235.2005
    • Lozupone, C. and Knight, R.: UniFrac: a new phylogenetic method for comparing microbial communities, Appl. Environ. Microb., 71, 8228-8235, 2005. (Pubitemid 41803949)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 31
    • 84866516898 scopus 로고    scopus 로고
    • Analysis of alkane-dependent methanogenic community derived from production water of high temperature petroleum reservoir
    • doi:10.1007/s00253-011-3828-8
    • Mbadinga, S. M., Li, K.-P., Zhou, L.,Wang, L.-Y., Yang, S.-Z., Liu, J.-F., Gu, J.-D., and Mu, B.-Z.: Analysis of alkane-dependent methanogenic community derived from production water of high temperature petroleum reservoir, Appl. Microbiol. Biot., 96, 531-542, doi:10.1007/s00253-011-3828-8, 2012.
    • (2012) Appl. Microbiol. Biot. , vol.96 , pp. 531-542
    • Mbadinga, S.M.1    Li, K.-P.2    Zhou, L.3    Wang, L.-Y.4    Yang, S.-Z.5    Liu, J.-F.6    Gu, J.-D.7    Mu, B.-Z.8
  • 33
    • 0029939361 scopus 로고    scopus 로고
    • Desulfotomaculum thermocisternum sp. nov., a sulfate reducer isolated from a hot north sea oil reservoir
    • Nilsen, R. K., Torsvik, T., and Lien, T.: Desulfotomaculum thermocisternum sp. nov., a sulfate reducer isolated from a hot North Sea oil reservoir, Int. J. Syst. Evol. Microbiol., 46, 397-402, 1996. (Pubitemid 26116219)
    • (1996) International Journal of Systematic Bacteriology , vol.46 , Issue.2 , pp. 397-402
    • Nilsen, R.K.1    Torsvik, T.2    Lien, T.3
  • 34
    • 0033952662 scopus 로고    scopus 로고
    • Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs
    • DOI 10.1128/AEM.66.2.700-711.2000
    • Orphan, V. J., Taylor, L. T., Hafenbradl, D., and Delong, E. F.: Culture-dependent and Culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs, Appl. Environ. Microb., 66, 700-711, 2000. (Pubitemid 30082762)
    • (2000) Applied and Environmental Microbiology , vol.66 , Issue.2 , pp. 700-711
    • Orphan, V.J.1    Taylor, L.T.2    Hafenbradl, D.3    Delong, E.F.4
  • 35
    • 0141670227 scopus 로고    scopus 로고
    • Geochemical influence on diversity and microbial processes in high temperature oil reservoirs
    • DOI 10.1080/01490450303898
    • Orphan, V. J., Goffredi, S. K., Delong, E. F., and Boles, J. R.: Geochemical influence on diversity and microbial processes in high temperature oil reservoirs, Geomicrobiol. J., 20, 295-311, 2003. (Pubitemid 37144632)
    • (2003) Geomicrobiology Journal , vol.20 , Issue.4 , pp. 295-311
    • Orphan, V.J.1    Goffredi, S.K.2    Delong, E.F.3    Boles, J.R.4
  • 36
    • 0033575896 scopus 로고    scopus 로고
    • Cracking anaerobic bacteria
    • Parkes, J.: Cracking anaerobic bacteria, Nature, 401, 217-218, 1999.
    • (1999) Nature , vol.401 , pp. 217-218
    • Parkes, J.1
  • 37
    • 58149216600 scopus 로고    scopus 로고
    • Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods
    • Pham, V. D., Hnatow, L. L., Zhang, S., Fallon, R. D., Jackson, S. S., Tomb, J-F., Delong, E. F., and Keeler, S. J.: Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods, Environ. Microbiol., 11, 176-187, 2009.
    • (2009) Environ. Microbiol. , vol.11 , pp. 176-187
    • Pham, V.D.1    Hnatow, L.L.2    Zhang, S.3    Fallon, R.D.4    Jackson, S.S.5    Tomb, J.-F.6    Delong, E.F.7    Keeler, S.J.8
  • 40
    • 0028843603 scopus 로고
    • Desulfacinum infernum gen. nov., sp. nov., a thermophilic sulfate-reducing bacterium from a petroleum reservoir
    • Rees, G. N., Grassia, G. S., Sheehy, A. J., Dwivedi, P. P., and Patel, B. K. C.: Desulfacinum infernum gen. nov., sp. nov., a thermophilic sulfate-reducing bacterium from a petroleum reservoir, Int. J. Syst. Evol. Microbiol., 45, 85-89, 1995.
    • (1995) Int. J. Syst. Evol. Microbiol. , vol.45 , pp. 85-89
    • Rees, G.N.1    Grassia, G.S.2    Sheehy, A.J.3    Dwivedi, P.P.4    Patel, B.K.C.5
  • 41
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and Nei, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406- 425, 1987.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 44
    • 9444221318 scopus 로고    scopus 로고
    • Anaerobic hydrocarbon biodegradation and the prospects for microbial enhanced energy production
    • V. D., and Rodolfo, Q.- R. Elsevier, Amsterdam, The Netherlands
    • Suflita, J. M., Davidova, I. A., Gieg, L. M., Nanny, M., and Prince, R. C.: Anaerobic hydrocarbon biodegradation and the prospects for microbial enhanced energy production, in: Studies in Surface Science and Catalysis, edited by: Rafael, V. D., and Rodolfo, Q.- R., Elsevier, Amsterdam, The Netherlands, 283-305, 2004.
    • (2004) Studies in Surface Science and Catalysis, Edited By: Rafael , pp. 283-305
    • Suflita, J.M.1    Davidova, I.A.2    Gieg, L.M.3    Nanny, M.4    Prince, R.C.5
  • 45
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S.: MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 28, 2731-2739, 2011.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 46
    • 2342494434 scopus 로고    scopus 로고
    • CANOCO Reference manual and CanoDraw for Windows User's guide: Software for Canonical Community Ordination (version 4.5)
    • Ithaca NY, USA
    • ter Braak, C. J. F. and Smilauer, P.: CANOCO Reference manual and CanoDraw for Windows User's guide: Software for Canonical Community Ordination (version 4.5), Microcomputer Power, Ithaca NY, USA, 2002.
    • (2002) Microcomputer Power
    • Ter Braak, C.J.F.1    Smilauer, P.2
  • 47
    • 0029662670 scopus 로고    scopus 로고
    • Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria
    • Voordouw, G., Armstrong, S., Reimer, M., Fouts, B., Telang, A., Shen, Y., and Gevertz, D.: Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria, Appl. Environ. Microb., 62, 1623-1629, 1996.
    • (1996) Appl. Environ. Microb. , vol.62 , pp. 1623-1629
    • Voordouw, G.1    Armstrong, S.2    Reimer, M.3    Fouts, B.4    Telang, A.5    Shen, Y.6    Gevertz, D.7
  • 48
    • 78650680191 scopus 로고    scopus 로고
    • Anaerobic degradation of petroleum hydrocarbons and enlightenment of the prospects for microbial bio-gasification of residual oil
    • (in Chinese with English abstract)
    • Wang, L.-Y., Mbadinga, S.-M., Li, H., Liu, J.-F., Yang, S.-Z., and Mu, B.-Z.: Anaerobic degradation of petroleum hydrocarbons and enlightenment of the prospects for microbial bio-gasification of residual oil, Microbiology, 37, 96-102, (in Chinese with English abstract) 2010.
    • (2010) Microbiology , vol.37 , pp. 96-102
    • Wang, L.-Y.1    Mbadinga, S.-M.2    Li, H.3    Liu, J.-F.4    Yang, S.-Z.5    Mu, B.-Z.6
  • 49
    • 79953105507 scopus 로고    scopus 로고
    • Characterization of an alkanedegrading methanogenic enrichment culture from production water an oil reservoir after 274 days of incubation
    • Wang, L.-Y., Gao, C.-X., Mbadinga, S.-M., Zhou, L., Liu, J.- F., Gu, J.-D., and Mu, B.-Z.: Characterization of an alkanedegrading methanogenic enrichment culture from production water an oil reservoir after 274 days of incubation, Int. Biodeterior. Biodegrada., 65, 444-450, 2011.
    • (2011) Int. Biodeterior. Biodegrada. , vol.65 , pp. 444-450
    • Wang, L.-Y.1    Gao, C.-X.2    Mbadinga, S.-M.3    Zhou, L.4    Liu, J.-F.5    Gu, J.-D.6    Mu, B.-Z.7
  • 50
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • DOI 10.1128/AEM.00062-07
    • Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R.: Naive bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microb., 73, 5261- 5267, 2007. (Pubitemid 47326658)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 51
    • 84864879397 scopus 로고    scopus 로고
    • Analyses of n-alkanes degrading community dynamics of a hightemperature methanogenic consortium enriched from production water of a petroleum reservoir by a combination of molecular techniques
    • Zhou,L., Li, K.-P., Mbadinga, S.-M., Yang, S.-Z., and Mu, B.-Z.: Analyses of n-alkanes degrading community dynamics of a hightemperature methanogenic consortium enriched from production water of a petroleum reservoir by a combination of molecular techniques, Ecotoxicology, 21, 1680-1691, 2012.
    • (2012) Ecotoxicology , vol.21 , pp. 1680-1691
    • Zhou, L.1    Li, K.-P.2    Mbadinga, S.-M.3    Yang, S.-Z.4    Mu, B.-Z.5


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