메뉴 건너뛰기




Volumn 18, Issue 12, 2012, Pages 2187-2200

Kinetic analysis of pre-ribosome structure in vivo

Author keywords

4 Thiouracil; Ribonucleoprotein; Ribosome synthesis; RNA structure; Yeast

Indexed keywords

4 THIOURACIL; RNA 18S;

EID: 84869798443     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.034751.112     Document Type: Article
Times cited : (21)

References (35)
  • 1
    • 0025110720 scopus 로고
    • Mutations define essential and nonessential U2 RNA structures
    • Ares M Jr, Igel AH. 1990a. Mutations define essential and nonessential U2 RNA structures. Mol Biol Rep 14: 131-132.
    • (1990) Mol Biol Rep , vol.14 , pp. 131-132
    • Ares Jr., M.1    Igel, A.H.2
  • 2
    • 0025674254 scopus 로고
    • Lethal and temperature-sensitive mutations and their suppressors identify an essential structural element in U2 small nuclear RNA
    • Ares M Jr, Igel AH. 1990b. Lethal and temperature-sensitive mutations and their suppressors identify an essential structural element in U2 small nuclear RNA. Genes Dev 4: 2132-2145. (Pubitemid 120034520)
    • (1990) Genes and Development , vol.4 , Issue.12 , pp. 2132-2145
    • Ares Jr., M.1    Igel, A.H.2
  • 3
    • 0032519508 scopus 로고    scopus 로고
    • A chemical modification method for the structural analysis of rna and rna-protein complexes within living cells
    • DOI 10.1006/abio.1997.2499
    • Balzer M, Wagner R. 1998. A chemical modification method for the structural analysis of RNA and RNA-protein complexes within living cells. Anal Biochem 256: 240-242. (Pubitemid 28106738)
    • (1998) Analytical Biochemistry , vol.256 , Issue.2 , pp. 240-242
    • Balzer, M.1    Wagner, R.2
  • 4
    • 0029093602 scopus 로고
    • Base-pairing between U3 and the preribosomal RNA is required for 18S rRNA synthesis
    • Beltrame M, Tollervey D. 1995. Base-pairing between U3 and the preribosomal RNA is required for 18S rRNA synthesis. EMBO J 14: 4350-4356.
    • (1995) EMBO J , vol.14 , pp. 4350-4356
    • Beltrame, M.1    Tollervey, D.2
  • 5
    • 78649426085 scopus 로고    scopus 로고
    • Crystal structure of the eukaryotic ribosome
    • Ben-Shem A, Jenner L, Yusupova G, Yusupov M. 2010. Crystal structure of the eukaryotic ribosome. Science 330: 1203-1209.
    • (2010) Science , vol.330 , pp. 1203-1209
    • Ben-Shem, A.1    Jenner, L.2    Yusupova, G.3    Yusupov, M.4
  • 7
    • 57749200753 scopus 로고    scopus 로고
    • Cell type-specific analysis of mRNA synthesis and decay in vivo with uracil phosphoribosyltransferase and 4-thiouracil
    • Cleary MD. 2008. Cell type-specific analysis of mRNA synthesis and decay in vivo with uracil phosphoribosyltransferase and 4-thiouracil. Methods Enzymol 448: 379-406.
    • (2008) Methods Enzymol , vol.448 , pp. 379-406
    • Cleary, M.D.1
  • 8
    • 79960229982 scopus 로고    scopus 로고
    • The initial U3 snoRNA:prerRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing
    • Dutca LM, Gallagher JE, Baserga SJ. 2011. The initial U3 snoRNA:prerRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing. Nucleic Acids Res 39: 5164-5180.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5164-5180
    • Dutca, L.M.1    Gallagher, J.E.2    Baserga, S.J.3
  • 9
    • 0037369912 scopus 로고    scopus 로고
    • Nob1p is required for cleavage of the 3′ end of 18S rRNA
    • DOI 10.1128/MCB.23.5.1798-1807.2003
    • Fatica A, Oeffinger M, Dlakic M, Tollervey D. 2003. Nob1p is required for cleavage of the 3′ end of 18S rRNA. Mol Cell Biol 23: 1798-1807. (Pubitemid 36246059)
    • (2003) Molecular and Cellular Biology , vol.23 , Issue.5 , pp. 1798-1807
    • Fatica, A.1    Oeffinger, M.2    Dlakic, M.3    Tollervey, D.4
  • 10
    • 77953622163 scopus 로고    scopus 로고
    • Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking
    • Granneman S, Petfalski E, Swiatkowska A, Tollervey D. 2010. Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking. EMBO J 29: 2026-2036.
    • (2010) EMBO J , vol.29 , pp. 2026-2036
    • Granneman, S.1    Petfalski, E.2    Swiatkowska, A.3    Tollervey, D.4
  • 13
    • 0037292453 scopus 로고    scopus 로고
    • Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center
    • DOI 10.1016/S1097-2765(03)00040-6
    • King TH, Liu B, McCully RR, Fournier MJ. 2003. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol Cell 11: 425-435. (Pubitemid 36293836)
    • (2003) Molecular Cell , vol.11 , Issue.2 , pp. 425-435
    • King, T.H.1    Liu, B.2    McCully, R.R.3    Fournier, M.J.4
  • 14
    • 77949563362 scopus 로고    scopus 로고
    • Yeast pre-rRNA processing and modification occur cotranscriptionally
    • Kos M, Tollervey D. 2010. Yeast pre-rRNA processing and modification occur cotranscriptionally. Mol Cell 37: 809-820.
    • (2010) Mol Cell , vol.37 , pp. 809-820
    • Kos, M.1    Tollervey, D.2
  • 15
    • 79959946169 scopus 로고    scopus 로고
    • Mapping in vivo RNA-RNA interactions by crosslinking, ligation and sequencing of hybrids
    • Kudla G, Granneman S, Hahn D, Beggs J, Tollervey D. 2011. Mapping in vivo RNA-RNA interactions by crosslinking, ligation and sequencing of hybrids. Proc Natl Acad Sci 108: 10010-10015.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 10010-10015
    • Kudla, G.1    Granneman, S.2    Hahn, D.3    Beggs, J.4    Tollervey, D.5
  • 16
    • 70149120737 scopus 로고    scopus 로고
    • Nob1 binds the single-stranded cleavage site D at the 3′-end of 18S rRNA with its PIN domain
    • Lamanna AC, Karbstein K. 2009. Nob1 binds the single-stranded cleavage site D at the 3′-end of 18S rRNA with its PIN domain. Proc Natl Acad Sci 106: 14259-14264.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 14259-14264
    • Lamanna, A.C.1    Karbstein, K.2
  • 17
    • 78650413785 scopus 로고    scopus 로고
    • An RNA conformational switch regulates pre-18S rRNA cleavage
    • Lamanna AC, Karbstein K. 2011. An RNA conformational switch regulates pre-18S rRNA cleavage. J Mol Biol 405: 3-17.
    • (2011) J Mol Biol , vol.405 , pp. 3-17
    • Lamanna, A.C.1    Karbstein, K.2
  • 19
    • 78049279838 scopus 로고    scopus 로고
    • Probing RNA structure within living cells
    • Liebeg A, Waldsich C. 2009. Probing RNA structure within living cells. Methods Enzymol 468: 219-238.
    • (2009) Methods Enzymol , vol.468 , pp. 219-238
    • Liebeg, A.1    Waldsich, C.2
  • 21
    • 0030763966 scopus 로고    scopus 로고
    • Decoding fidelity at the ribosomal A and P sites: Influence of mutations in three different regions of the decoding domain in 16S rRNA
    • DOI 10.1093/nar/25.6.1185
    • O'Connor M, Thomas CL, Zimmermann RA, Dahlberg AE. 1997. Decoding fidelity at the ribosomal A and P sites: Influence of mutations in three different regions of the decoding domain in 16S rRNA. Nucleic Acids Res 25: 1185-1193. (Pubitemid 27303210)
    • (1997) Nucleic Acids Research , vol.25 , Issue.6 , pp. 1185-1193
    • O'Connor, M.1    Thomas, C.L.2    Zimmermann, R.A.3    Dahlberg, A.E.4
  • 22
    • 0038403669 scopus 로고    scopus 로고
    • Insights into the decoding mechanism from recent ribosome structures
    • DOI 10.1016/S0968-0004(03)00066-5
    • Ogle JM, Carter AP, Ramakrishnan V. 2003. Insights into the decoding mechanism from recent ribosome structures. Trends Biochem Sci 28: 259-266. (Pubitemid 36588668)
    • (2003) Trends in Biochemical Sciences , vol.28 , Issue.5 , pp. 259-266
    • Ogle, J.M.1    Carter, A.P.2    Ramakrishnan, V.3
  • 23
    • 70449656291 scopus 로고    scopus 로고
    • RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1
    • Pertschy B, Schneider C, Gnadig M, Schafer T, Tollervey D, Hurt E. 2009. RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1. J Biol Chem 284: 35079-35091.
    • (2009) J Biol Chem , vol.284 , pp. 35079-35091
    • Pertschy, B.1    Schneider, C.2    Gnadig, M.3    Schafer, T.4    Tollervey, D.5    Hurt, E.6
  • 25
    • 0032771416 scopus 로고    scopus 로고
    • Base pairing between U3 small nucleolar RNA and the 5' end of 18S rRNA is required for pre-rRNA processing
    • Sharma K, Tollervey D. 1999. Base pairing between U3 small nucleolar RNA and the 5′ end of 18S rRNA is required for pre-rRNA processing. Mol Cell Biol 19: 6012-6019. (Pubitemid 29399306)
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.9 , pp. 6012-6019
    • Sharma, K.1    Tollervey, D.2
  • 26
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • DOI 10.1016/S0076-6879(88)64064-X
    • Stern S, Moazed D, Noller HF. 1988. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol 164: 481-489. (Pubitemid 19067612)
    • (1988) Methods in Enzymology , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 27
    • 84863619022 scopus 로고    scopus 로고
    • A translationlike cycle is a quality control checkpoint for maturing 40S ribosome subunits
    • Strunk BS, Novak MN, Young CL, Karbstein K. 2012. A translationlike cycle is a quality control checkpoint for maturing 40S ribosome subunits. Cell 150: 111-121.
    • (2012) Cell , vol.150 , pp. 111-121
    • Strunk, B.S.1    Novak, M.N.2    Young, C.L.3    Karbstein, K.4
  • 29
    • 0023661309 scopus 로고
    • A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA
    • Tollervey D. 1987. A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J 6: 4169-4175.
    • (1987) EMBO J , vol.6 , pp. 4169-4175
    • Tollervey, D.1
  • 30
    • 0015935199 scopus 로고
    • The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast
    • Udem SA, Warner JR. 1973. The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast. J Biol Chem 248: 1412-1416.
    • (1973) J Biol Chem , vol.248 , pp. 1412-1416
    • Udem, S.A.1    Warner, J.R.2
  • 31
    • 0036712305 scopus 로고    scopus 로고
    • RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo
    • DOI 10.1101/gad.231302
    • Waldsich C, Grossberger R, Schroeder R. 2002. RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo. Genes Dev 16: 2300-2312. (Pubitemid 35013092)
    • (2002) Genes and Development , vol.16 , Issue.17 , pp. 2300-2312
    • Waldsich, C.1    Grossberger, R.2    Schroeder, R.3
  • 32
    • 77955787630 scopus 로고    scopus 로고
    • Advances in RNA structure analysis by chemical probing
    • Weeks KM. 2010. Advances in RNA structure analysis by chemical probing. Curr Opin Struct Biol 20: 295-304.
    • (2010) Curr Opin Struct Biol , vol.20 , pp. 295-304
    • Weeks, K.M.1
  • 34
    • 0029312758 scopus 로고
    • Analysis of the structure of Tetrahymena nuclear RNAs in vivo: Telomerase RNA, the self-splicing rRNA intron, and U2 snRNA
    • Zaug AJ, Cech TR. 1995. Analysis of the structure of Tetrahymena nuclear RNAs in vivo: Telomerase RNA, the self-splicing rRNA intron, and U2 snRNA. RNA 1: 363-374.
    • (1995) RNA , vol.1 , pp. 363-374
    • Zaug, A.J.1    Cech, T.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.