-
1
-
-
70349456541
-
The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold-adaptation
-
Allen, M.A., Lauro, F.M., Williams, T.J., Burg, D., Siddiqui, K.S., De Franciscii, D., etal. (2009) The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold-adaptation. ISME J 3: 1012-1035.
-
(2009)
ISME J
, vol.3
, pp. 1012-1035
-
-
Allen, M.A.1
Lauro, F.M.2
Williams, T.J.3
Burg, D.4
Siddiqui, K.S.5
De Franciscii, D.6
-
2
-
-
0035853480
-
TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes
-
Anantharaman, V., Koonin, E.V., and Aravind, L. (2001) TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes. FEMS Microbiol Lett 197: 215-221.
-
(2001)
FEMS Microbiol Lett
, vol.197
, pp. 215-221
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
3
-
-
50249085426
-
RNase activity of polynucleotide phosphorylase is critical at low temperature in Escherichia coli and is complemented by RNase II
-
Awano, N., Inouye, M., and Phadtare, S. (2008) RNase activity of polynucleotide phosphorylase is critical at low temperature in Escherichia coli and is complemented by RNase II. J Bacteriol 190: 5924-5933.
-
(2008)
J Bacteriol
, vol.190
, pp. 5924-5933
-
-
Awano, N.1
Inouye, M.2
Phadtare, S.3
-
4
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
Bell, S.D., and Jackson, S.P. (2001) Mechanism and regulation of transcription in archaea. Curr Opin Microbiol 4: 208-213.
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
5
-
-
80051911251
-
Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii
-
Campanaro, S., Williams, T.J., Burg, D.W., De Francisci, D., Treu, L., Lauro, F.M., and Cavicchioli, R. (2011) Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii. Environ Microbiol 13: 2018-2038.
-
(2011)
Environ Microbiol
, vol.13
, pp. 2018-2038
-
-
Campanaro, S.1
Williams, T.J.2
Burg, D.W.3
De Francisci, D.4
Treu, L.5
Lauro, F.M.6
Cavicchioli, R.7
-
6
-
-
33646839948
-
Cold-adapted archaea
-
Cavicchioli, R. (2006) Cold-adapted archaea. Nat Rev Microbiol 4: 331-343.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 331-343
-
-
Cavicchioli, R.1
-
7
-
-
0036624809
-
Low-temperature extremophiles and their applications
-
Cavicchioli, R., Siddiqui, K.S., Andrews, D., and Sowers, K.R. (2002) Low-temperature extremophiles and their applications. Curr Opin Biotechnol 13: 253-261.
-
(2002)
Curr Opin Biotechnol
, vol.13
, pp. 253-261
-
-
Cavicchioli, R.1
Siddiqui, K.S.2
Andrews, D.3
Sowers, K.R.4
-
8
-
-
33746531322
-
Genome of rice cluster I Archaea - the key methane producers in the rice rhizosphere
-
Erkel, C., Kube, M., Reinhardt, R., and Liesack, W. (2006) Genome of rice cluster I Archaea - the key methane producers in the rice rhizosphere. Science 313: 370-372.
-
(2006)
Science
, vol.313
, pp. 370-372
-
-
Erkel, C.1
Kube, M.2
Reinhardt, R.3
Liesack, W.4
-
9
-
-
0142217167
-
An exosome-like complex in Sulfolobus solfataricus
-
Evguenieva-Hackenberg, E., Walter, P., Hochleitner, E., Lottspeich, F., and Klug, G. (2003) An exosome-like complex in Sulfolobus solfataricus. EMBO Rep 4: 889-893.
-
(2003)
EMBO Rep
, vol.4
, pp. 889-893
-
-
Evguenieva-Hackenberg, E.1
Walter, P.2
Hochleitner, E.3
Lottspeich, F.4
Klug, G.5
-
10
-
-
59049102826
-
RamA, a protein required for reductive activation of corrinoid-dependent methylamine methyltransferase reactions in methanogenic archaea
-
Ferguson, T., Lienard, T., Gottschalk, G., and Krzycki, J.A. (2009) RamA, a protein required for reductive activation of corrinoid-dependent methylamine methyltransferase reactions in methanogenic archaea. J Biol Chem 23: 2285-2295.
-
(2009)
J Biol Chem
, vol.23
, pp. 2285-2295
-
-
Ferguson, T.1
Lienard, T.2
Gottschalk, G.3
Krzycki, J.A.4
-
11
-
-
0027096383
-
A methanogenic archaeon from Ace Lake, Antarctica: Methanococcoides burtonii sp. nov
-
Franzmann, P.D., Stringer, N., Ludwig, W., Conway De Macario, E., and Rohde, M. (1992) A methanogenic archaeon from Ace Lake, Antarctica: Methanococcoides burtonii sp. nov. Sys Appl Microbiol 15: 573-581.
-
(1992)
Sys Appl Microbiol
, vol.15
, pp. 573-581
-
-
Franzmann, P.D.1
Stringer, N.2
Ludwig, W.3
Conway De Macario, E.4
Rohde, M.5
-
12
-
-
23944523895
-
A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts
-
Galperin, M.Y. (2005) A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol 5: 35.
-
(2005)
BMC Microbiol
, vol.5
, pp. 35
-
-
Galperin, M.Y.1
-
13
-
-
0029121223
-
Identification of GroEL as a constituent of an mRNA-protection complex in Escherichia coli
-
Georgellis, D., Sohlberg, B., Hartl, F.U., and von Gabain, A. (1995) Identification of GroEL as a constituent of an mRNA-protection complex in Escherichia coli. Mol Microbiol 16: 1259-1268.
-
(1995)
Mol Microbiol
, vol.16
, pp. 1259-1268
-
-
Georgellis, D.1
Sohlberg, B.2
von Hartl, F.U.3
Gabain, A.4
-
14
-
-
34547617526
-
The structure and function of cold shock proteins in archaea
-
Giaquinto, L., Curmi, P.M.G., Siddiqui, K.S., Poljak, A., DeLong, E., DasSarma, S., etal. (2007) The structure and function of cold shock proteins in archaea. J Bacteriol 189: 5738-5748.
-
(2007)
J Bacteriol
, vol.189
, pp. 5738-5748
-
-
Giaquinto, L.1
Curmi, P.M.G.2
Siddiqui, K.S.3
Poljak, A.4
DeLong, E.5
DasSarma, S.6
-
15
-
-
0345109287
-
Anaerobic microbes: oxygen detoxification without superoxide dismutase
-
Jenney, F.E., Verhagen, M.F.J., Cui, X., and Adams, M.W.W. (1999) Anaerobic microbes: oxygen detoxification without superoxide dismutase. Science 286: 306-309.
-
(1999)
Science
, vol.286
, pp. 306-309
-
-
Jenney, F.E.1
Verhagen, M.F.J.2
Cui, X.3
Adams, M.W.W.4
-
16
-
-
0030043216
-
Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli
-
Jones, P.G., Mitta, M., Kim, Y., Jiang, W., and Inouye, M. (1996) Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc Natl Acad Sci USA 93: 76-80.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 76-80
-
-
Jones, P.G.1
Mitta, M.2
Kim, Y.3
Jiang, W.4
Inouye, M.5
-
17
-
-
33646523370
-
The exosome and the proteasome: nano-compartments for degradation
-
Lorentzen, E., and Conti, E. (2006) The exosome and the proteasome: nano-compartments for degradation. Cell 125: 651-654.
-
(2006)
Cell
, vol.125
, pp. 651-654
-
-
Lorentzen, E.1
Conti, E.2
-
18
-
-
0030047027
-
Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis
-
Luttinger, A., Hahn, J., and Dubnau, D. (1996) Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis. Mol Microbiol 19: 343-356.
-
(1996)
Mol Microbiol
, vol.19
, pp. 343-356
-
-
Luttinger, A.1
Hahn, J.2
Dubnau, D.3
-
19
-
-
10044290651
-
Cold adaptation in the Antarctic archaeon, Methanococcoides burtonii, involves membrane lipid unsaturation
-
Nichols, D.S., Miller, M.R., Davies, N.W., Goodchild, A., Raftery, M., and Cavicchioli, R. (2004) Cold adaptation in the Antarctic archaeon, Methanococcoides burtonii, involves membrane lipid unsaturation. J Bacteriol 186: 8508-8515.
-
(2004)
J Bacteriol
, vol.186
, pp. 8508-8515
-
-
Nichols, D.S.1
Miller, M.R.2
Davies, N.W.3
Goodchild, A.4
Raftery, M.5
Cavicchioli, R.6
-
20
-
-
0042337212
-
opt, 95°C)
-
opt, 95°C). J Bacteriol 185: 5483-5490.
-
(2003)
J Bacteriol
, vol.185
, pp. 5483-5490
-
-
Noon, K.R.1
Guymon, R.2
Crain, P.F.3
McCloskey, J.A.4
Thomm, M.5
Lim, J.6
-
21
-
-
80051924524
-
The protein folding challenge in psychrophiles: facts and current issues
-
Piette, F., Struvay, C., and Feller, G. (2011) The protein folding challenge in psychrophiles: facts and current issues. Environ Microbiol 13: 1924-1933.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1924-1933
-
-
Piette, F.1
Struvay, C.2
Feller, G.3
-
22
-
-
0032526978
-
The chaperonin of the archaeon Sulfolobus solfataricus is an RNA-binding protein that participates in ribosomal RNA processing
-
Ruggero, D., Ciammaruconi, A., and Londei, P. (1998) The chaperonin of the archaeon Sulfolobus solfataricus is an RNA-binding protein that participates in ribosomal RNA processing. EMBO J 17: 3471-3477.
-
(1998)
EMBO J
, vol.17
, pp. 3471-3477
-
-
Ruggero, D.1
Ciammaruconi, A.2
Londei, P.3
-
23
-
-
0038824870
-
Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea, Methanogenium frigidum and Methanococcoides burtonii
-
Saunders, N., Thomas, T., Curmi, P.M.G., Mattick, J.S., Kuczek, E., Slade, R., etal. (2003) Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea, Methanogenium frigidum and Methanococcoides burtonii. Genome Res 13: 1580-1588.
-
(2003)
Genome Res
, vol.13
, pp. 1580-1588
-
-
Saunders, N.1
Thomas, T.2
Curmi, P.M.G.3
Mattick, J.S.4
Kuczek, E.5
Slade, R.6
-
24
-
-
19144373707
-
Genomic studies of uncultivated archaea
-
Schleper, C., Jurgens, G., and Jonuscheit, M. (2005) Genomic studies of uncultivated archaea. Nat Rev Microbiol 3: 479-488.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 479-488
-
-
Schleper, C.1
Jurgens, G.2
Jonuscheit, M.3
-
26
-
-
0000043761
-
Dioxygen and hemerythrin
-
Stenkamp, R.E. (1994) Dioxygen and hemerythrin. Chem Rev 94: 715-726.
-
(1994)
Chem Rev
, vol.94
, pp. 715-726
-
-
Stenkamp, R.E.1
-
27
-
-
0033982036
-
Effect of temperature on stability and activity of elongation factor 2 proteins from Antarctic and thermophilic methanogens
-
Thomas, T., Kumar, N., and Cavicchioli, R. (2000) Effect of temperature on stability and activity of elongation factor 2 proteins from Antarctic and thermophilic methanogens. J Bacteriol 182: 1328-1332.
-
(2000)
J Bacteriol
, vol.182
, pp. 1328-1332
-
-
Thomas, T.1
Kumar, N.2
Cavicchioli, R.3
-
28
-
-
0035108129
-
Effects of ribosomes and intracellular solutes on activities and stabilities of elongation factor 2 proteins from psychrotolerant and thermophilic methanogens
-
Thomas, T., Kmuar, N., and Cavicchioli, R. (2001) Effects of ribosomes and intracellular solutes on activities and stabilities of elongation factor 2 proteins from psychrotolerant and thermophilic methanogens. J Bacteriol 183: 1974-1982.
-
(2001)
J Bacteriol
, vol.183
, pp. 1974-1982
-
-
Thomas, T.1
Kmuar, N.2
Cavicchioli, R.3
-
29
-
-
77957304449
-
Cold adaptation in the marine bacterium, Sphingopyxis alaskensis, assessed using quantitative proteomics
-
Ting, L., Williams, T.J., Cowley, M.J., Lauro, F.M., Guilhaus, M., Raftery, M., and Cavicchioli, R. (2010) Cold adaptation in the marine bacterium, Sphingopyxis alaskensis, assessed using quantitative proteomics. Environ Microbiol 12: 2658-2676.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2658-2676
-
-
Ting, L.1
Williams, T.J.2
Cowley, M.J.3
Lauro, F.M.4
Guilhaus, M.5
Raftery, M.6
Cavicchioli, R.7
-
30
-
-
75249095274
-
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
-
Wang, L., Feng, Z., Wang, X., Wang, X., and Zhang, X. (2010) DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26: 136-138.
-
(2010)
Bioinformatics
, vol.26
, pp. 136-138
-
-
Wang, L.1
Feng, Z.2
Wang, X.3
Wang, X.4
Zhang, X.5
-
31
-
-
37949015684
-
The solubility of nitrogen, oxygen and argon in water and seawater
-
Weiss, R.F. (1970) The solubility of nitrogen, oxygen and argon in water and seawater. Deep Sea Res 17: 721-735.
-
(1970)
Deep Sea Res
, vol.17
, pp. 721-735
-
-
Weiss, R.F.1
-
32
-
-
76149124222
-
Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii Part I: the effect of growth temperature
-
Williams, T.J., Burg, D.W., Raftery, M.J., Poljak, A., Guilhaus, M., Pilak, O., and Cavicchioli, R. (2010) Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii Part I: the effect of growth temperature. J Proteome Res 9: 640-652.
-
(2010)
J Proteome Res
, vol.9
, pp. 640-652
-
-
Williams, T.J.1
Burg, D.W.2
Raftery, M.J.3
Poljak, A.4
Guilhaus, M.5
Pilak, O.6
Cavicchioli, R.7
-
33
-
-
80051944885
-
Defining the response of a microorganism to temperatures that span its complete growth temperature range (-2°C to 28°C) using multiplex quantitative proteomics
-
Williams, T.J., Lauro, F.M., Ertan, H., Burg, D.W., Poljak, A., Raftery, M.J., and Cavicchioli, R. (2011) Defining the response of a microorganism to temperatures that span its complete growth temperature range (-2°C to 28°C) using multiplex quantitative proteomics. Environ Microbiol 13: 2186-2203.
-
(2011)
Environ Microbiol
, vol.13
, pp. 2186-2203
-
-
Williams, T.J.1
Lauro, F.M.2
Ertan, H.3
Burg, D.W.4
Poljak, A.5
Raftery, M.J.6
Cavicchioli, R.7
-
34
-
-
54449098595
-
Methanogenesis from methanol at low temperature by a novel psychrophilic methanogen, Methanolobus psychrophilus sp. nov., prevalent in Zoige wetland of Tibetan Plateau
-
Zhang, G., Jiang, N., Liu, X., and Dong, X. (2008) Methanogenesis from methanol at low temperature by a novel psychrophilic methanogen, Methanolobus psychrophilus sp. nov., prevalent in Zoige wetland of Tibetan Plateau. Appl Environ Microbiol l74: 6114-6120.
-
(2008)
Appl Environ Microbiol
, vol.L74
, pp. 6114-6120
-
-
Zhang, G.1
Jiang, N.2
Liu, X.3
Dong, X.4
-
35
-
-
0037008743
-
Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells, a ferritin-like DNA-binding protein of Escherichia coli
-
Zhao, G., Ceci, P., Ilari, A., Giangiacomo, L., Laue, T.M., Chiancone, E., and Chasteen, N.D. (2002) Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells, a ferritin-like DNA-binding protein of Escherichia coli. J Biol Chem 277: 27689-27696.
-
(2002)
J Biol Chem
, vol.277
, pp. 27689-27696
-
-
Zhao, G.1
Ceci, P.2
Ilari, A.3
Giangiacomo, L.4
Laue, T.M.5
Chiancone, E.6
Chasteen, N.D.7
|