Whole-genome sequence of cupriavidus sp. Strain BIS7, A heavy-metal-resistant bacterium

Journal of Bacteriology

Volumn 194, Issue 22, 2012, Pages 6324-

  Hong, Kar Wai ^a   Thinagaran, Dinaiz ^a   Gan, Han Ming ^b   Yin, Wai Fong ^a   Chan, Kok Gan ^a  

^a UNIVERSITY OF MALAYA   (Malaysia)

^b ScienceVision SB   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CHROMIC ACID; COBALT; COPPER; FERRIC ION; FERROUS ION; GENOMIC DNA; NICKEL; RNA 16S; RNA 23S; RNA 5S; SELENIUM; ZINC;

BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM; BACTERIUM ISOLATION; CUPRIAVIDUS; GENE SEQUENCE; HEAVY METAL RESISTANT BACTERIUM; NONHUMAN; NOTE; OPEN READING FRAME; OPERON; PRIORITY JOURNAL; SOIL MICROFLORA;

CUPRIAVIDUS; DRUG RESISTANCE, BACTERIAL; METALS, HEAVY; MOLECULAR SEQUENCE DATA;

BACTERIA (MICROORGANISMS); CUPRIAVIDUS;

EID: 84869144666     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01608-12     Document Type: Note

References (14)

1. Aydin B, et al. 2012. A case of newborn with community acquired pneumonia caused by Cupriavidus pauculus. Tuberk. Toraks 60:160-162.
2. Barrett CF, Parker MA. 2006. Coexistence of Burkholderia, Cupriavidus, and Rhizobium sp. nodule bacteria on two Mimosa spp. in Costa Rica. Appl. Environ. Microbiol. 72:1198-1206.
3. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. 2008. GenBank. Nucleic Acids Res. 36:D25-D30.
4. Conesa A, et al. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674-3676.
5. Estrada-de Los Santos P, Martínez-Aguilar L, López-Lara IM, Caballero- Mellado J. 2012. Cupriavidus alkaliphilus sp. nov., a new species associated with agricultural plants that grow in alkaline soils. Syst. Appl. Microbiol. 35:310-314.
6. Hyatt D, et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119.
7. Janssen PJ, et al. 2010. The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One 5:e10433.
8. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
9. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
10. Mondal P, Majumder CB, Mohanty B. 2008. Treatment of arsenic contaminated water in a batch reactor by using Ralstonia eutropha MTCC 2487 and granular activated carbon. J. Hazard Mater. 153:588-599.
11. Nies DH. 2003. Efflux-mediated heavy metal resistance in prokaryotes. FEMS Microbiol. Rev. 27:313-339.
12. Pérez-Pantoja D, De la Iglesia R, Pieper DH, González B. 2008. Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134. FEMS Microbiol. Rev. 32:736-794.
13. Slater H, Gouin T, Leigh MB. 2011. Assessing the potential for rhizoremediation of PCB contaminated soils in northern regions using native tree species. Chemosphere 84:199-206.
14. Zoropogui A, Gambarelli S, Covès J. 2008. CzcE from Cupriavidus metallidurans CH34 is a copper-binding protein. Biochem. Biophys. Res. Commun. 365:735-739.