Molecular cloning, characterization and expression analysis of a CC chemokine gene from miiuy croaker (Miichthys miiuy)

Fish Physiology and Biochemistry

Volumn 38, Issue 6, 2012, Pages 1697-1708

  Cheng, Yuanzhi ^a   Sun, Yuena ^a   Shi, Ge ^a   Wang, Rixin ^a   Xu, Tianjun ^a  

^a ZHEJIANG OCEAN UNIVERSITY   (China)

Author keywords

CC chemokines; Gene expression; Innate immune system; Miichthys miiuy; Vibrio anguillarum

Indexed keywords

ACANTHAMOEBA POLYPHAGA MIMIVIRUS; LISTONELLA ANGUILLARUM; MAMMALIA; MIICHTHYS MIIUY; PSEUDOSCIAENA CROCEA;

EID: 84869117171     PISSN: 09201742     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10695-012-9665-6     Document Type: Article

References (52)

1. Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL worksapce: a web-based environment for protein structure homology modeling. Bioinformatics 22: 195-201.
2. Bao B, Peatman E, Peng X, Baoprasertkul P, Wang G, Liu Z (2006) Characterization of 23 CC chemokine genes and analysis of their expression in channel catfish (Ictalurus punctatus). Dev Comp Immunol 30: 783-796.
3. Bondad-Reantaso MG (2007) Assessment of freshwater fish seed resources for sustainable aquaculture. Food and Agriculture Organization of the United Nations, Rome.
4. Borza T, Stone C, Rise ML, Bowman S, Johnson SC (2010) Atlantic cod (Gadus morhua) CC chemokines: diversity and expression analysis. Dev Comp Immunol 34: 904-913.
5. Chen CA, Shyu A (1995) AU-rich elements, characterization and importance in mRNA degradation. Trends Biochem Sci 20: 465-470.
6. Chen L, He C, Baoprasertkul P, Xu P, Li P, Serapion J (2005) Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene structure, and expression after infection with Edwardsiella ictaluri. Dev Comp Immunol 29: 135-142.
7. Chen SL, Liu Y, Dong XL, Meng L (2010) Cloning, characterization, and expression analysis of a CC chemokine gene from turbot (Scophthalmus maximus). Fish Physiol Biochem 36: 147-155.
8. Cheng YZ, Wang RX, Ge S, Xu TJ (2011) Molecular characterization of miiuy croaker CC chemokine gene and its expression following Vibrio anguillarum injection. Fish Shellfish Immunol 31: 148-154.
9. Cuesta A, Dios S, Figueras A, Novoa B, Esteban MA, Meseguer J, Tafalla C (2010) Identification of six novel CC chemokines in gilthead seabream (Sparus aurata) implicated in the antiviral immune response. Mol Immunol 47: 1235-1243.
10. Dixon B, Shum B, Adams EJ, Magor KE, Hedrick RP, Muir DG (1998) CK-1, a putative chemokine of rainbow trout (Oncorhynchus mykiss). Immunol Rev 57: 409-419.
11. Dumetz F, Duchaud E, LaPatra SE, Marrec CL, Claverol S, Urdaci M, He'naff ML (2006) A protective immune response is generated in rainbow trout by an OmpH-Like surface antigen (P18) of Flavobacterium psychrophilum. Appl Environ Microbiol 72: 4845-4852.
12. Ellis AE (2001) Innate host defense mechanisms of fish against viruses and bacteria. Dev Comp Immunol 25: 827-839.
13. Evans TJ (2009) Bacterial triggering of inflammation by intracellular sensors. Future Microbiol 4: 65-75.
14. Evelyn TPT (2002) Finfish immunology and its use in preventing infectious diseases in cultured finfish. In: Lavilla-Pitogo CR, Cruz-Lacierda ER (eds) Diseases in Asian aquaculture IV (Fish Health Section). Asian Fisheries Society, Manila, pp 303-324.
15. Fujiki K, Shin DH, Nakao M, Yano T (2004) Molecular cloning of carp CC chemokine, CXC chemokine receptors, allograft inflammatory factor-1, and natural killer cell enhancing factor by use of suppression subtractive hybridization. Immnuogenetics 49: 909-914.
16. Gómez GD, Balcázar JL (2008) A review on the interactions between gut microbiota and innate immunity of fish. FEMS Immunol Med Microbiol 52: 145-154.
17. Grisez L, Tan Z (2005) Vaccine development for Asian Aquaculture. In: Walker P, Lester R, Bondad-Reantaso MG (eds) Diseases in Asian aquaculture V fish health section, proceedings of the fifth symposium in Asian aquaculture. Asian Fisheries Society, Goldcoast, Australia, pp 483-494.
18. Harrison GA, Wedlock DN (2000) Marsupial cytokines. Structure, function and evolution. Dev Comp Immunol 24: 473-484.
19. Hurst LD, Smith NG (1999) Do essential genes evolve slowly? Curr Biol 9: 747-750.
20. Inoue Y, Haruta C, Usui K, Moritomo T, Nakanishi T (2003) Molecular cloning and sequencing of the banded dogfish (Triakis scyllia) interleukin-8 cDNA. Fish Shellfish Immunol 14: 275-281.
21. Khattiya R, Ohira T, Hirono I, Aoki T (2004) Identification of a novel Japanese flounder (Paralichthys olivaceus) CC chemokine gene and an analysis of its function. Immunogenetics 55: 763-769.
22. Laing KJ, Secombes CJ (2004) Trout CC chemokines: comparison of their sequences and expression patterns. Mol Immunol 41: 793-808.
23. Lee EY, Park HH, Kim YT, Choi TJ (2001) Cloning and sequence analysis of the interleukin-8 gene from flounder (Paralichthys olivaceous). Gene 274: 237-243.
24. Lian KJ, Zou JJ, Wang T, Bols N, Hirono I, Aoki T (2002) Identification and analysis of an interleukin 8-like molecule in rainbow trout Oncorhynchus mykiss. Dev Comp Immunol 26: 433-444.
25. Liang KJ, Secombes CJ (2004) Chemokines. Dev Comp Immunol 28: 443-460.
26. Lou B (2004) Biology and breeding technology of Miichthys miiuy. Chin J Mod Fish 6: 11-13.
27. Luster A (2002) The role of chemokines in linking innate and adaptive immunity. Curr Opin Immunol 14: 129-135.
28. Magnadottir B (2006) Innate immunity of fish (overview). Fish Shellfish Immunol 20: 137-151.
29. Markestad A, Grave K (1997) Reduction of antibacterial drug use in Norwegian fish farming due to vaccination. Dev Biol 90: 365-369.
30. Mayer KL, Stone MJ (2000) NMR solution structure and receptor peptide binding of the CC chemokine eotaxin-2. Biochemistry 39: 8382-8395.
31. Meyer A, van de Peer Y (2005) From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). BioEssays 27: 937-945.
32. Naylor R, Burke M (2005) Aquaculture and ocean resource: raising tigers of the sea. Annu Rev Environ Resour 30: 185-218.
33. Nielsen H, Engelbrecht J, Brunak S, Heijne G (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10: 1-6.
34. Nomiyama H, Hieshima K, Osada N, Kato-Unoki Y, Otsuka-Ono K, Takegawa S, Izawa T, Yoshizawa A, Kikuchi Y, Tanase S, Miura R, Kusuda J, Nakao M, Yoshie O (2008) Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX. BMC Genomics 9: 222.
35. Nomiyama H, Osada N, Yoshie O (2010) The evolution of mammalian chemokine genes. Cytokine Growth Factor Rev 21: 253-262.
36. Nomiyama H, Osada N, Yoshie O (2011) A family tree of vertebrate chemokine receptors for a unified nomenclature. Dev Comp Immunol 35: 705-715.
37. Pallavicini A, Randelli E, Modonut M, Casani D, Scapigliati G, Buonocore F (2010) Searching for immunomodulatory sequences in sea bass (Dicentrarchus labrax L.): transcripts analysis from thymus. Fish Shellfish Immunol 29: 571-578.
38. Peatman E, Baoprasertkul P, He C, Li P, Kucuktas H, Liu Z (2005) In silico identification and expression analysis of 12 novel CC chemokines in catfish. Immunogenetics 57: 409-419.
39. Ravi V, Venkatesh B (2008) Rapidly evolving fish genome and teleost diversity. Curr Opin Genet Dev 18: 544-550.
40. Sambrook J, Russell DW (eds) (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York.
41. Sato Y, Nishida M (2010) Teleost fish with specific genome duplication as unique models of vertebrate evolution. Environ Biol Fish 88: 169-188.
42. Savan R, Sakai M (2006) Genomics of fish cytokines. Comp Biochem Physiol 1: 89-101.
43. Sommerset I, Krossoy B, Biering E, Frost P (2005) Vaccines for fish in aquaculture. Expert Rev Vaccines 4: 89-101.
44. Verschuere L, Rombaut G, Sorgeloos P, Verstraete W (2000) Probiotic bacteria as biological control agents in aquaculture. Microbiol Mol Biol Rev 64: 655-671.
45. Wang J, Adelson DL, Yilmaz A, Sze SH, Jin Y, Zhu JJ (2005) Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics. BMC Genomics 6: 45.
46. Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191.
47. Whyte SK (2007) The innate immune response of finfish-A review of current knowledge. Fish Shellfish Immunol 23: 1127-1151.
48. Xu TJ, Meng FX, Sun YN, Ge S, Wang RX (2010) Identification of immune genes of the miiuy croaker (Miichthys miiuy) by sequencing and bioinformatic analysis of ESTs. Fish Shellfish Immunol 29: 1099-1105.
49. Xu TJ, Cheng YZ, Ge S, Wang RX (2011) Molecular cloning, characterization, and expression analysis of a disease-resistance related CC chemokine gene in miiuy croaker (Miichthys miiuy). Aquaculture 318: 25-32.
50. Zhang JZ, Chen XH (2008) Molecular characterization of a novel CC chemokine in large yellow croaker (Pseudosciaena crocea) and its involvement in modulation of MHC class I antigen processing and presentation pathway. Mol Immunol 45: 2076-2086.
51. Zhang JZ, Ao JQ, Chen XH (2008) Molecular and functional characterization of a novel CC chemokine in large yellow croaker (Pseudosciaena crocea). Fish Shellfish Immunol 25: 664-671.
52. Zlotnik A, Yoshie O, Nomiyama H (2006) The chemokine and chemokine receptor superfamilies and their molecular evolution. Genome Biol 7: 243.