DNAGear- A free software for spa type identification in Staphylococcus aureus

BMC Research Notes

Volumn 5, Issue , 2012, Pages

  Al Tam, Faroq ^a   Brunel, Anne Sophie ^b   Bouzinbi, Nicolas ^b   Corne, Philippe ^b,c   Bañuls, Anne Laure ^b   Shahbazkia, Hamid Reza ^a  

^a UNIVERSITY OF ALGARVE   (Portugal)

^b INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^c MONTPELLIER UNIVERSITY HOSPITAL   (France)

Author keywords

[No Author keywords available]

Indexed keywords

STAPHYLOCOCCUS AUREUS;

BACTERIAL DNA; STAPHYLOCOCCUS PROTEIN A;

ALGORITHM; ARTICLE; BACTERIUM IDENTIFICATION; CLASSIFICATION; COMPUTER PROGRAM; GENETICS; GENOTYPE; HUMAN; MOLECULAR GENETICS; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; STAPHYLOCOCCUS AUREUS;

ALGORITHMS; BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; DNA, BACTERIAL; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; SOFTWARE; STAPHYLOCOCCAL PROTEIN A; STAPHYLOCOCCUS AUREUS;

MLCS; MLOWN;

EID: 84869099341     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-642     Document Type: Article

References (10)

1. The evolution of Staphylococcus aureus. Deurenberg RH, Stobberingh EE, Infect Genet Evol 2008 8 6 747 763 10.1016/j.meegid.2008.07.007 18718557
2. Evaluation of adding a second marker to overcome Staphylococcus aureus spa typing homoplasies. Basset P, Nübel U, Witte W, Blanc DS, J Clin Microbiol 2012 50 4 1475 1477 10.1128/JCM.00664-11 22259202
3. Methicillin-susceptible ST398 Staphylococcus aureus responsible for bloodstream infections: an emerging human-adapted subclone? Valentin-Domelier AS, Girard M, Bertrand X, Violette J, François P, Donnio PY, Talon D, Quentin R, Schrenzel J, van der Mee-Marquet N, of the Réseau des Hygiénistes du Centre (RHC) BISG, PLoS One 2011 6 12 28369 10.1371/journal.pone.0028369 22163008
4. Are host genetics the predominant determinant of persistent nasal Staphylococcus aureus carriage in humans? Ruimy R, Angebault C, Djossou F, Dupont C, Epelboin L, Jarraud S, Lefevre LA, Bes M, Lixandru BE, Bertine M, Miniai AE, Renard M, Bettinger RM, Lescat M, Clermont O, Peroz G, Lina G, Tavakol M, Vandenesch F, van Belkum A, Rousset F, Andremont A, J Infect Dis 2010 202 6 924 934 10.1086/655901 20677941
5. Molecular typing of methicillin-resistant Staphylococcus aureus on the basis of protein A gene polymorphism. Frénay HM, Bunschoten AE, Schouls LM, van Leeuwen WJ, Vandenbroucke-Grauls CM, Verhoef J, Mooi FR, Eur J Clin Microbiol Infect Dis 1996 15 60 64 10.1007/BF01586186 8641305 (Pubitemid 26051263)
6. Evaluation of protein A gene polymorphic region DNA sequencing for typing of Staphylococcus aureus strains. Shopsin B, Gomez M, Montgomery SO, Smith DH, Waddington M, Dodge DE, Bost DA, Riehman M, Naidich S, Kreiswirth BN, J Clin Microbiol 1999 37 11 3556 3563 10523551 (Pubitemid 29491091)
7. Spa typing method for discriminating among Staphylococcus aureus isolates: implications for use of a single marker to detect genetic micro- and macrovariation. Koreen L, Ramaswamy SV, Graviss EA, Naidich S, Musser JM, Kreiswirth BN, J Clin Microbiol 2004 42 2 792 799 10.1128/JCM.42.2.792-799.2004 14766855 (Pubitemid 38222664)
8. Double-locus sequence typing using clfB and spa, a fast and simple method for epidemiological typing of methicillin-resistant Staphylococcus aureus. Kuhn G, Francioli P, Blanc DS, J Clin Microbiol 2007 45 54 62 10.1128/JCM.01457-06 17093014 (Pubitemid 46106406)
9. Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database management. Harmsen D, Claus H, Witte W, Rothgänger J, Claus H, Turnwald D, Vogel U, J Clin Microbiol 2003 41 12 5442 5448 10.1128/JCM.41.12. 5442-5448.2003 14662923 (Pubitemid 37543228)
10. CAP3: A DNA Sequence Assembly Program. Huang X, Madan A, Genome Research 1999 9 9 868 877 10.1101/gr.9.9.868 10508846 (Pubitemid 29488446)