Comparison of dkgB-linked intergenic sequence ribotyping to DNA microarray hybridization for assigning serotype to Salmonella enterica

FEMS Microbiology Letters

Volumn 337, Issue 1, 2012, Pages 61-72

  Guard, Jean ^a   Sanchez Ingunza, Roxana ^a   Morales, Cesar ^a   Stewart, Tod ^a   Liljebjelke, Karen ^a,c   Van Kessel, Joann ^b   Ingram, Kim ^a   Jones, Deana ^a   Jackson, Charlene ^a   Fedorka Cray, Paula ^a   Frye, Jonathan ^a   Gast, Richard ^a   Hinton, Arthur ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c UNIVERSITY OF CALGARY   (Canada)

Author keywords

Epidemiology; Food safety; Single nucleotide polymorphism

Indexed keywords

ARTICLE; BACTERIAL GENE; CONTROLLED STUDY; DKGB GENE; DNA FLANKING REGION; DNA MICROARRAY; GENE IDENTIFICATION; INTERGENIC SEQUENCE RIBOTYPING; INTERMETHOD COMPARISON; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RIBOSOME; SALMONELLA ENTERICA; SEQUENCE ANALYSIS; SEROTYPE; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; DNA, BACTERIAL; DNA, INTERGENIC; HUMANS; MICROARRAY ANALYSIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RIBOTYPING; SALMONELLA ENTERICA; SALMONELLA INFECTIONS; SALMONELLA INFECTIONS, ANIMAL; SEROTYPING; SUGAR ALCOHOL DEHYDROGENASES;

SALMONELLA ENTERICA;

EID: 84869095024     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/1574-6968.12010     Document Type: Article

References (16)

1. Achtman M (1996) A surfeit of YATMs? J Clin Microbiol 34: 1.
2. Achtman M, Wain J, Weill FX et al. (2012) Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog 8: e1002776.
3. Bopp C, Brenner FW, Wells J & Strokbine N (1999) Escherichia, Shigella, and Salmonella. Manual of Clinical Microbiology (Murray P, Baron E, Pfaller M, Tenover F & Yolken R, eds), pp. 459-474. ASM Press, Washington, DC.
4. Brenner FW, Villar RG, Angulo FJ, Tauxe R & Swaminathan B (2000) Salmonella nomenclature. J Clin Microbiol 38: 2465-2467.
5. Curd H, Liu D & Reeves PR (1998) Relationships among the O-antigen gene clusters of Salmonella enterica groups B, D1, D2, and D3. J Bacteriol 180: 1002-1007.
6. Foodnet (2011) Vital signs: incidence and trends of infection with pathogens transmitted commonly through food-foodborne diseases active surveillance network, 10 U.S. sites, 1996-2010. MMWR Morb Mortal Wkly Rep 60: 749-755.
7. Guard J, Morales CA, Fedorka-Cray P & Gast RK (2011) Single nucleotide polymorphisms that differentiate two subpopulations of Salmonella Enteritidis within phage type. BMC Res Notes 4: 369.
8. Kauffman F & Edwards P (1952) A simplification of the Kauffmann-White schema. Am J Clin Path 22: 692-697.
9. Madajczak G & Szych J (2010) Evaluation of PremiTest Salmonella kit for identification of not-typable by conventional methods Salmonella. Med Dosw Mikrobiol 62: 29-36.
10. Malorny B, Guerra B, Zeltz P, Rissler K & Helmuth R (2003) Typing of Salmonella by DNA-microarrays. Berl Munch Tierarztl Wochenschr 116: 482-486.
11. Morales CA, Gast R & Guard-Bouldin J (2006) Linkage of avian and reproductive tract tropism with sequence divergence adjacent to the 5S ribosomal subunit rrfH of Salmonella enterica. FEMS Microbiol Lett 264: 48-58.
12. Popoff M & Le Minor L (2001) Antigenic Formulas of the Salmonella Serovars, 8th revision. World Health Organization Collaborating Centre for Reference and Research on Salmonella, Institut Pasteur, Paris.
13. Porwollik S & McClelland M (2003) Lateral gene transfer in Salmonella. Microbes Infect 5: 977-989.
14. Pulido-Landinez M, Laviniki V, Sanchez-Ingunza R, Guard J & Pinheiro do Nascimento V (2012) Use of FTA cards for the transport of DNA samples of Salmonella spp. from poultry products from southern Brazil. Acta Sci Vet 40: 1073.
15. Wattiau P, Van Hessche M, Schlicker C, Vander Veken H & Imberechts H (2008) Comparison of classical serotyping and PremiTest assay for routine identification of common Salmonella enterica serovars. J Clin Microbiol 46: 4037-4040.
16. Wattiau P, Boland C & Bertrand S (2011) Methodologies for Salmonella enterica subsp. enterica subtyping: gold standards and alternatives. Appl Environ Microbiol 77: 7877-7885.