SSR markers associated for late leaf spot disease resistance by bulked segregant analysis in groundnut (Arachis hypogaea L.)

Euphytica

Volumn 188, Issue 2, 2012, Pages 265-272

  Shoba, D ^a   Manivannan, N ^a   Vindhiyavarman, P ^a   Nigam, S N ^b  

^a TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

^b INTERNATIONAL CROPS RESEARCH INSTITUTE FOR THE SEMI ARID TROPICS ICRISAT   (India)

Author keywords

Bulked segregant analysis; Groundnut; Late leaf spot; SSR markers

Indexed keywords

ANIMALIA; ARACHIS HYPOGAEA; PHAEOISARIOPSIS PERSONATA; TOBACCO MOSAIC VIRUS;

EID: 84869089378     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-012-0718-9     Document Type: Article

References (47)

1. Anderson WF, Wynne JC, Green CC (1986) Potential for incorporation of early and late leaf spot resistance in peanut. Plant Breed 97: 163-170.
2. Anonymous (2008) Agricultural Statistics at a Glance-2007-08. Directorate of Economics and Stastistics, Ministry of Agriculture, Government of India, New Delhi.
3. Benbouza H, Jacquemin JM, Baudoin JP, Mergeai G (2006) Optimization of a reliable, fast, cheap and sensitive silver staining method to detect SSR markers in polyacrylamide gels. Biotechnol Agron Soc Environ 10(2): 77-81.
4. Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142(1-2): 169-196.
5. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
6. Dudley JW (1993) Molecular markers in plant improvement: manipulation of genes affecting quantitative traits. Crop Sci 33: 660-668.
7. Dwivedi SL, Gurtu S, Chandra S, Yuejin W, Nigam SN (2001) Assessment of genetic diversity among selected groundnut germplasm. I: RAPD analysis. Plant Breed 120: 345-349.
8. Dwivedi SL, Pande S, Rao JN, Nigam SN (2002) Components of resistance to late leaf spot and rust among interspecific derivatives and their significance in a foliar disease resistance breeding in groundnut (Arachis hypogaea L.). Euphytica 125: 81-88.
9. Food and Agriculture Organization of the United Nations (FAOSTAT) (2007) http://faostat. fao. org/site/567/default. aspx. Accessed 30 Mar 2009.
10. Green CC, Wynne JC (1986) Diallel and generation means analyses for the components of resistance to Cercospora arachidicola in peanut. Theor Appl Genet 73: 228-235.
11. Green CC, Wynne JC (1987) Genetic variability and heritability for resistance to early leaf spot in four crosses of Virginia-type peanut. Crop Sci 27: 18-21.
12. Guang C, Xiong-Ming DU (2006) Genetic diversity source germplasm of upland cotton in China as determined by SSR marker analysis. Acta Genet Sin 33: 733-745.
13. Halward TM, Stalker HT, LaRue EA, Kochert G (1991) Genetic variation detectable with molecular markers among unadapted germplasm resources of cultivated peanut and related wild species. Genome 34: 1013-1020.
14. Hamid MA, Isleib TG, Wynne JC, Green CC (1981) Combining ability analysis of Cercospora leaf spot resistance and agronomic traits in Arachis hypogaea L. Oleagineux 36: 605-612.
15. He G, Prakash CS (2001) Evaluation of genetic relationships among botanical varieties of cultivated peanut (Arachis hypogaea L.) using markers. Genet Resour Crop Evol 48: 347-352.
16. Jogloy S, Wynne JC, Beute MK (1987) Inheritance of late leaf spot resistance and agronomic traits in peanut. Peanut Sci 14: 86-90.
17. Kornegay JL, Beute MK, Wynne JC (1980) Inheritance of resistance to Cercospora arachidicola and Cercosporidium personatum in six Virginia-type peanut lines. Peanut Sci 7: 4-9.
18. Krishna GK, Zhang JF, Burow M, Pittman RN, Lu Y, Puppala N, Elikostadinov SG (2004) Genetic diversity analysis in Valencia peanut (Arachis hypogaea L.) using microsatellite markers. Cell Mol Biol Lett 9(4): 685-697.
19. Leal-Bertioli SCM, Jose ACVF, Alves-Freitas DMT, Moretzsohn MC, Guimaraes PM, Nielen S, Vidigal BS, Pereira RW, Pike J, Favero AP, Parniske M, Varshney RK, Bertioli DJ (2009) Identification of candidate genome regions controlling disease resistance in Arachis. BMC Plant Biol 9: 112-123.
20. Li YC, Fahima T, Roder MS, Kirzhner VM, Beiles A, Korol AB, Nevo E (2003) Genetic effects on microsatellite diversity in wild emmer wheat (Triticum dicoccoides) at the Yehudiyya microsite, Israel. Heredity 90: 150-156.
21. Mace ES, Phong DT, Upadhaya HD, Chandra S, Crouch JH (2006) SSR analysis of cultivated groundnut (Arachis hypogaea L.) germplasm resistant to rust and late leaf spot diseases. Euphytica 152(3): 317-330.
22. Michelmore RW, Paranand I, Kessele RV (1991) Identification of markers linked to disease resistance genes by bulk segregant analysis: a rapid method to detect markers in specific genome using segregant population. Proc Natl Acad Sci USA 88: 9828-9832.
23. Mondal S, Ghosh S, Badigannavar AM (2005) RAPD polymorphism among groundnut genotypes differing in disease reaction to late leaf spot and rust. Intl Arachis Newslett 25: 27-30.
24. Mondal S, Badigannavar AM, Murthy GSS (2007) RAPD markers linked to rust resistance in cultivated groundnut (Arachis hypogaea L.). Euphytica 159: 233-239.
25. Morgante M, Olivieri A (1993) PCR-amplified microsatellite as markers in plant genetics. Plant J 3: 175-182.
26. Motagi (2001) Genetic analysis of resistance to late leaf spot and rust vis-à-vis productivity in groundnut (Arachis hypogaea L.). Dissertation, University of Agriculture Sciences, Dharwad, India.
27. Nevill DJ (1982) Inheritance of resistance to Cercosporidium personatum in groundnuts: a genetic model and its implications for selection. Oleagineux 37: 355-362.
28. Pande S, Rao NJ (2001) Resistance of wild Arachis species to late leaf spot and rust in greenhouse trials. Plant Dis 85: 851-885.
29. Raina SN, Rani V, Kojima T, Ojihara Y, Singh KP, Devarumath RM (2001) RAPD and ISSR fingerprints as useful genetic markers for analysis of genetic diversity, varietal identification, and phylogenetic relationships in peanut (Arachis hypogaea) cultivars and wild species. Genome 44(5): 763-772.
30. Ribaut JM, Banziger M, Betran J, Jiang C, Edmeades GO, Dreher K, Hoisington D (2002) Use of molecular markers in plant breeding: drought tolerance improvement in tropical maize. In: Kang MS (ed) Quantitative genetics genomics and plant breeding. CABI Publishing, Wallingford, pp 85-99.
31. Sax K (1923) The association of size differences with seed coat pattern and pigmentation in Phaseolus vulgaris. Genetics 8: 552-560.
32. Selvaraj MG, Narayana M, Schubert AM, Ayers JL, Baring MR, Burow MD (2009) Identification of QTLs for pod and kernel traits in cultivated peanut by bulked segregant analysis. Electron J Biotechnol 12(2): 13.
33. Sharief Y, Rawlings JO, Gregory WC (1978) Estimates of leaf spot resistance in three interspecific hybrids of Arachis. Euphytica 27: 741-751.
34. Singh AK, Smartt J, Simpson CE, Raina SN (1998) Genetic variation vis-à-vis molecular polymorphism in groundnut, Arachis hypogaea L. Genet Resour Crop Evol 45: 119-126.
35. Subrahmanyam P, Reddy LJ, Gibbons RW, McDonald D (1985) Peanut rust: a major threat to peanut production in the semi arid tropics. Plant Dis 69: 813-819.
36. Subrahmanyam P, McDonald D, Waliyar F, Reddy LJ, Nigam SN, Gibbons RW, Rao VR, Singh AK, Pande S, Reddy PM, Subba Rao PV (1995) Screening methods and sources of resistance to rust and late leaf spot of groundnut. Information Bulletin No. 47, ICRISAT, Patancheru, p 24.
37. Subramanian V, Gurtu S, Rao RCN, Nigam SN (2000) Identification of DNA polymorphism in cultivated groundnut using random amplified polymorphic DNA(RAPD) assay. Genome 43: 656-660.
38. Tang R, Gao G, He L, Han Z, Shan S, Zhong R, Zhou C, Jiang J, Li Y, Zhuang W (2007) Genetic diversity in cultivated groundnut based on SSR markers. J Genet Genomics 34(5): 449-459.
39. Tiwari SP, Ghewande MP, Misra DP (1984) Inheritance of resistance to rust and late leaf spot in groundnut (Arachis hypogaea). J Cytol Genet 19: 97-101.
40. Tommasini L, Bately J, Arnold GM, Cooke RJ, Donini P, Lee D, Law JR, Lowe C, Moule C, Trick M, Edwards KJ (2003) The development of multiplex simple sequence repeat (SSR) markers to complement distinctness, uniformity and stability testing of rape (Brassica napus L.) varieties. Theor Appl Genet 106: 1091-1101.
41. Varma TSN, Dwivedi SL, Pande S, Gowda MVC (2005) SSR markers associated with resistance to rust (Puccinia arachidis Speg.) in groundnut (Arachis hypogaea L.). SABRAO J 37(2): 107-119.
42. Varshney RK, Hoisington DA, Upadhyaya HD, Gaur PM, Nigam SN, Saxena K, Vadez V, Sethy NK, Bhatia S, Aruna R, Gowda MVC, Singh NK (2007) Molecular genetics and breeding of grain legume crops for the semi-arid tropics. In: Varshney RK, Tuberosa R (eds) Genomic assisted crop improvement genomics applications in crops. Springer, Dordrecht, pp 207-2420.
43. Waliyar F (1991) Evaluation of yield losses due to groundnut leaf diseases in West Africa. In: Nduguru BJ, Waliyar F, Ntare BR (eds) Summary proceedings of the second ICRISAT regional groundnut meeting for West Africa. ICRISAT Sahelian Centre, Niamey, Niger, pp 32-33.
44. Wang GL, Paterson AH (1994) Assessment of DNA pooling strategies for mapping of QTLs. Theor Appl Genet 88: 355-361.
45. Wang CT, Yang XD, Chen DX, Yu SL, Liu GZ, Tang YY, Xu JZ (2007) Isolation of simple sequence repeats from groundnut. Electron J Biotechnol 10(3): 473-480.
46. Wenzl P, Raman H, Wang J, Zhou M, Huttner E, Kilian A (2007) A DArT platform for quantitative bulked segregant analysis. BMC Genomics 8: 196.
47. Young ND, Weeden NF, Kochert G (1996) Genome mapping in legumes (Fam. Fabaceae). In: Paterson AH (ed) Genome mapping in plants. Landes Company, Austin, pp 211-227.