Petroleum-degrading enzymes: Bioremediation and new prospects

Enzyme Research

Volumn 2011, Issue 1, 2011, Pages

  Peixoto, R S ^a   Vermelho, A B ^a   Rosado, A S ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

BENZENE; ENZYME; ENZYME DEGRADING ENZYME; ETHYLBENZENE; FOSSIL FUEL; PETROLEUM; PETROLEUM DERIVATIVE; POLYCYCLIC AROMATIC HYDROCARBON; TOLUENE; UNCLASSIFIED DRUG; XYLENE;

AEROBIC METABOLISM; ANAEROBIC METABOLISM; ANALYTICAL PARAMETERS; BIOACCUMULATION; BIOCATALYSIS; BIODEGRADATION; BIOPROSPECTING RESEARCH; BIOREMEDIATION; BIOTRANSFORMATION; CHEMICAL REACTION; COMBUSTION; COST BENEFIT ANALYSIS; ENERGY YIELD; ENVIRONMENTAL FACTOR; ENZYME DEGRADATION; ENZYME PURIFICATION; ENZYME SPECIFICITY; ENZYME SYNTHESIS; ENZYME YIELD RECOVERY; METABOLIC ENGINEERING; MICROBIAL DIVERSITY; MOLECULAR BIOLOGY; NONHUMAN; OIL SPILL; PETROCHEMICAL INDUSTRY; PRIORITY JOURNAL; PROTEIN EXPRESSION; REVIEW; SALINITY; TEMPERATURE; TRANSGENIC ORGANISM;

EID: 84869071453     PISSN: 20900406     EISSN: 20900414     Source Type: Journal    
DOI: 10.4061/2011/475193     Document Type: Review

References (48)

1. Madigan M. T., Martinko J. M., Dunlap P. V., Clark D. P., Brock Biology of Microorganisms 2010 12th Benjamin Cummings
2. Cao B., Nagarajan K., Loh K. C., Biodegradation of aromatic compounds: current status and opportunities for biomolecular approaches. Applied Microbiology and Biotechnology 2009 85 2 207 228 2-s2.0-71349086975 10.1007/s00253-009-2192-4
3. van Hamme J. D., Singh A., Ward O. P., Recent advances in petroleum microbiology. Microbiology and Molecular Biology Reviews 2003 67 4 503 549 2-s2.0-0347478284 10.1128/MMBR.67.4.503-549.2003 (Pubitemid 37553164)
4. Ehrlich H. L., Geomicrobiology 1995 New York, NY, USA Marcel Dekker
5. Santos H. F., Carmo F. L., Paes J. E., Rosado A. S., Peixoto R. S., Bioremediation of mangroves impacted by petroleum. Water, Air, and Soil Pollution 2011 216 1-4 329 350 10.1007/s11270-010-0536-4
6. Santos H. F., Cury J. C., do Carmo F. L., Mangrove bacterial diversity and the impact of petroleum contamination revealed by pyrosequencing: bacterial proxies for petroleum pollution. PLoS One 2011 6 3 e16943
7. Korda A., Santas P., Tenente A., Santas R., Petroleum hydrobcarbon bioremediation: sampling and analytical techniques, in situ treatments and commercial microorganisms currently used. Applied Microbiology and Biotechnology 1997 48 6 677 686 2-s2.0-0031282938 10.1007/s002530051115 (Pubitemid 28022454)
8. Crapez M. A. C., Borges A. L. N., Bispo M. G. S., Prereira D. C., Tratamento para derrames de petróleo. Ciência Hoje 2002 30 179 32 37
9. Alexander M., Biodegradation and Bioremediation 1994 San Diego, Calif, USA Academic Press
10. Atlas R. M., Microbial hydrocarbon degradation-bioremediation of oil spills. Journal of Chemical Technology and Biotechnology 1991 52 2 149 156 2-s2.0-0025900648
11. Cunha C. D., Leite S. G. F., Gasoline biodegradation in different spetroleum microcosms. Brazilian Journal of Microbiology 2000 31 1 45 49 2-s2.0-0008232907
12. Watanabe K., Hamamura N., Molecular and physiological approaches to understanding the ecology of pollutant degradation. Current Opinion in Biotechnology 2003 14 3 289 295 2-s2.0-0038143253 10.1016/S0958-1669(03)00059-4 (Pubitemid 36782658)
13. Broderick J. B., Catechol dioxygenases. Essays in Biochemistry 1999 34 11 173 189 2-s2.0-0033289158 (Pubitemid 129638937)
14. van Beilen J. B., Funhoff E. G., Alkane hydroxylases involved in microbial alkane degradation. Applied Microbiology and Biotechnology 2007 74 1 13 21 2-s2.0-33846621913 10.1007/s00253-006-0748-0 (Pubitemid 46183463)
15. van Beilen J. B., Wubbolts M. G., Witholt B., Genetics of alkane oxidation by Pseudomonas oleovorans. Biodegradation 1994 5 3-4 161 174 2-s2.0-0028672044 10.1007/BF00696457
16. van Beilen J. B., Panke S., Lucchini S., Franchini A. G., Rothlisberger M., Witholt B., Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology 2001 147 6 1621 1630 2-s2.0-0034969905 (Pubitemid 32544827)
17. Hosoda A., Kasai Y., Hamamura N., Takahata Y., Watanabe K., Development of a PCR method for the detection and quantification of benzoyl-CoA reductase genes and its application to monitored natural attenuation. Biodegradation 2005 16 6 591 601 2-s2.0-16844386076 10.1007/s10532-005-0826-5 (Pubitemid 40486374)
18. Nyer E. K., Groundwater and Spetroleum Remediation: Pratical Methods and Strategies 1998 Ann Arbor, Mich, USA Ann Arbor Press
19. Seabra P. C. S., Bomtempo J. V., Costa N. O., Biotechnology in the petroleum industry: 1988-1997. Technical Bulletin 1999 42 Rio de Janeiro, Brazil PETROBRAS. http://www2.petrobras.com.br/boletim/Boletim4214/3Biotec.PDF
20. Alcalde M., Ferrer M., Plou F. J., Ballesteros A., Environmental biocatalysis: from remediation with enzymes to novel green processes. Trends in Biotechnology 2006 24 6 281 287 2-s2.0-33744933430 10.1016/j.tibtech.2006.04.002 (Pubitemid 43841912)
21. Paul D., Pandey G., Pandey J., Jain R. K., Accessing microbial diversity for bioremediation and environmental restoration. Trends in Biotechnology 2005 23 3 135 142 2-s2.0-13944264742 10.1016/j.tibtech.2005.01.001 (Pubitemid 40269846)
22. Peixoto R. S., Silva R. F., Rosado A. S., Biorremediaão de ambientes contaminados com petróleo e seus derivados. Microbiologia in Foco 2009 8 17 30
23. Sutherland T. D., Horne I., Weir K. M., Coppin C. W., Williams M. R., Selleck M., Russell R. J., Oakeshott J. G., Enzymatic bioremediation: from enzyme discovery to applications. Clinical and Experimental Pharmacology and Physiology 2004 31 11 817 821 2-s2.0-9344225791 10.1111/j.1440-1681.2004.04088.x (Pubitemid 39556860)
24. Setti L., Lanzarini G., Pifferi P. G., Whole cell biocatalysis for an petroleum desulfurization process. Fuel Processing Technology 1997 52 1-3 145 153 2-s2.0-0031277882
25. Samanta S. K., Singh O. V., Jain R. K., Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation. Trends in Biotechnology 2002 20 6 243 248 2-s2.0-0036605098 10.1016/S0167-7799(02)01943-1 (Pubitemid 34451059)
26. Whiteley C. G., Lee D. J., Enzyme technology and biological remediation. Enzyme and Microbial Technology 2006 38 3-4 291 316 2-s2.0-28844495397 10.1016/j.enzmictec.2005.10.010 (Pubitemid 41774497)
27. Alcalde M., Bulter T., Zumárraga M., García-Arellano H., Mencía M., Plou F. J., Ballesteros A., Screening mutant libraries of fungal laccases in the presence of organic solvents. Journal of Biomolecular Screening 2005 10 6 624 631 2-s2.0-24944495615 10.1177/1087057105277058 (Pubitemid 41306661)
28. Smith M., Thurston F., Wood D. A., Messerschmidt A., Fungal laccases: role in delignification and possible industrial applications. Multi-Copper Oxi- Dases 1997 Singapore World Scientific Publishing 201 224
29. Bulter T., Alcalde M., Sieber V., Meinhold P., Schlachtbauer C., Arnold F. H., Functional expression of a fungal laccase in Saccharomyces cerevisiae by directed evolution. Applied and Environmental Microbiology 2003 69 2 987 995 2-s2.0-0037322616 10.1128/AEM.69.2.987-995.2003 (Pubitemid 36210863)
30. Scott C., Lewis S. E., Milla R., Taylor M. C., Rodgers A. J. W., Dumsday G., Brodie J. E., Oakeshott J. G., Russell R. J., A free-enzyme catalyst for the bioremediation of environmental atrazine contamination. Journal of Environmental Management 2010 91 10 2075 2078 2-s2.0-77954383706 10.1016/j.jenvman.2010.05.007
31. http://www.bccresearch.com/report/BIO019A.html
32. U.S. EPA, States Environmental Protection Agency National Contingency Plan Product. 2011, http://www.epa.gov/osweroe1/content/ncp/productschedule.htm
33. Mesarch M. B., Nakatsu C. H., Nies L., Development of catechol 2,3-dioxygenase-specific primers for monitoring bioremediation by competitive quantitative PCR. Applied and Environmental Microbiology 2000 66 2 678 683 2-s2.0-0033981078 10.1128/AEM.66.2.678-683.2000 (Pubitemid 30082758)
34. Anderson K. M., Jaquinod L., Jensen M. A., Ngo N., Davis R. W., A novel catechol-based universal support for oligonucleotide synthesis. Journal of Organic Chemistry 2007 72 26 9875 9880 2-s2.0-37549005622 10.1021/jo071087a
35. Whyte L. G., Greer C. W., Inniss W. E., Assessment of the biodegradation potential of psychrotrophic microorganisms. Canadian Journal of Microbiology 1996 42 2 99 106 2-s2.0-0029669110
36. Vomberg A., Klinner U., Distribution of alkB genes within n-alkane-degrading bacteria. Journal of Applied Microbiology 2000 89 2 339 348 2-s2.0-0033850347 10.1046/j.1365-2672.2000.01121.x
37. Kohno T., Sugimoto Y., Sei K., Mori K., Design of primers and gene probes for general detection of alkane-degrading bactéria. Microbes and Environments 2002 17 3 114 121
38. Kloos K., Munch J. C., Schloter M., A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. Journal of Microbiological Methods 2006 66 3 486 496 2-s2.0-33745942487 10.1016/j.mimet.2006.01.014 (Pubitemid 44061998)
39. Wang L., Wang W., Lai Q., Shao Z., Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean. Environmental Microbiology 2010 12 5 1230 1242 2-s2.0-77953557020 10.1111/j.1462-2920.2010.02165.x
40. Aroonsri A., Kitani S., Choi S. Uk., Nihira T., Isolation and characterization of bamA genes, homologues of the c-butyrolactone autoregulator-receptor gene in Amycolatopsis mediterranei, a rifamycin producer. Biotechnology Letters 2008 30 11 2019 2024 2-s2.0-52449110315 10.1007/s10529-008-9794-2
41. Kuntze K., Shinoda Y., Moutakki H., McInerney M. J., Vogt C., Richnow H. H., Boll M., 6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes. Environmental Microbiology 2008 10 6 1547 1556 2-s2.0-43449135300 10.1111/j.1462-2920.2008. 01570.x (Pubitemid 351670253)
42. Staats M., Braster M., Röling W. F., Molecular diversity and distribution of aromatic hydrocarbon-degrading anaerobes across a landfill leachate plume. Environmental Microbiology 2011 13 5 1216 1227 10.1111/j.1462-2920.2010.02421.x
43. Beller H. R., Kane S. R., Legler T. C., Alvarez P. J.J., A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene. Environmental Science and Technology 2002 36 18 3977 3984 10.1021/es025556w (Pubitemid 35024509)
44. Botton S., van Harmelen M., Braster M., Parsons J. R., Röling W. F. M., Dominance of Geobacteraceae in BTX-degrading enrichments from an iron-reducing aquifer. FEMS Microbiology Ecology 2007 62 1 118 130 2-s2.0-34848872870 10.1111/j.1574-6941.2007.00371.x (Pubitemid 47508569)
45. Winderl C., Schaefer S., Lueders T., Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker. Environmental Microbiology 2007 9 4 1035 1046 2-s2.0-33947128111 10.1111/j.1462-2920.2006.01230.x (Pubitemid 46397099)
46. Zeyaullah M., Kamli M. R., Islam B., Metagenomics-an advanced approach for non- cultivable micro-organisms. Biotechnology and Molecular Biology Reviews 2009 4 3 49 54
47. Kim S. J., Kweon O., Cerniglia C. E., Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways. Current Opinion in Microbiology 2009 12 13 301 309 10.1016/j.mib.2009.03.006
48. Rittmann B. E., Schloendorn J., Engineering away lysosomal junk: medical bioremediation. Rejuvenation Research 2007 10 3 359 365 2-s2.0-34548508969 10.1089/rej.2007.0594 (Pubitemid 47378717)