Identifying multiple origins of polyploid taxa: A multilocus study of the hybrid cloak fern (Astrolepis integerrima; Pteridaceae)

American Journal of Botany

Volumn 99, Issue 11, 2012, Pages 1857-1865

  Beck, James B ^a   Allison, James R ^b   Pryer, Kathleen M ^c   Windham, Michael D ^c  

^a WICHITA STATE UNIVERSITY   (United States)

^b Duke University ^*  (United States)

^c DUKE UNIVERSITY   (United States)

Author keywords

AFLP; Astrolepis integerrima; Hybridization; Ketona Glades; Multiple origins; PCO MC; Polyploidy; Pteridaceae; TrnG trnR intergenic spacer

Indexed keywords

FERN; GENE FLOW; GENETIC VARIATION; HYBRID; HYBRIDIZATION; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; PHYLOGENETICS; PLASTID; POLYPLOIDY; TAXONOMY;

CARIBBEAN ISLANDS; MEXICO [NORTH AMERICA]; UNITED STATES;

EID: 84869057672     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1200199     Document Type: Article

References (65)

1. ALBACH, D. C. 2007. Amplifi ed fragment length polymorphisms and sequence data in the phylogenetic analysis of polyploids: Multiple origins of Veronica cymbalaria (Plantaginaceae). New Phytologist 176: 481-498.
2. ALLISON, J. R., AND T. E. STEVENS. 2001. Vascular fl ora of Ketona dolomite outcrops in Bibb County, Alabama. Castanea 66: 154-205.
3. ASKER, S., AND L. JERLING. 1992. Apomixis in plants. CRC Press, Boca Raton, Florida, USA.
4. BARTGIS, R. L. 1993. The limestone glades and barrens of West Virginia. Castanea 58: 69-89.
5. BASKIN, J. M., AND C. C. BASKIN. 1986. Distribution and geographical/ evolutionary relationships of cedar glade endemics in southeastern United States. Association of Southeastern Biologists Bulletin 33: 138-154.
6. BECK, J. B., M. D. WINDHAM, AND K. M. PRYER. 2011. Do asexual polyploid lineages lead short evolutionary lives? A case study from the fern genus Astrolepis. Evolution 65: 3217-3229.
7. BECK, J. B., M. D. WINDHAM, G. YATSKIEVYCH, AND K. M. PRYER. 2010. A diploids-fi rst approach to species delimitation and interpreting polyploid evolution in the fern genus Astrolepis (Pteridaceae). Systematic Botany 35: 223-234.
8. BENHAM, D. M. 1989. A biosystematic revision of the fern genus Astrolepis (Adiantaceae). M.S. thesis, Northern Arizona University, Flagstaff, Arizona, USA.
9. BENHAM, D. M., AND M. D. WINDHAM. 1993. Astrolepis. In Flora of North America Editorial Committee [eds.], Flora of North America north of Mexico, vol. 2, 140-143. Oxford University Press, New York, New York, USA.
10. CIFUENTES, M., F. EBER, M. O. LUCAS, ET AL. 2010. Repeated polyploidy drove different levels of crossover suppression between homoeologous chromosomes in Brassica napus allohaploids. Plant Cell 22: 2265-2276.
11. CORE, E. L. 1952. The ranges of some plants of the Appalachian shale barrens. Castanea 17: 105-115.
12. COSENDAI, A. C., J. RODEWALD, AND E. HÖRANDL. 2011. Origin and distribution of autopolyploids via apomixis in the alpine species Ranunculus kuepferi (Ranunculaceae). Taxon 60: 355-364.
13. DESELM, H. R. 1994. Tennessee barrens. Castanea 59: 214-225.
14. DESELM, H. R., B. E. WOFFORD, M. E. MEDLEY, AND R. R. HAYNES. 1997. Western and central-southeastern elements in the fl ora of the southern ridge and valley. In A. F. Scott, S. W. Hamilton, E. W. Chester, and D. S. White [eds.], Proceedings of the seventh symposium on the natural history of the lower Tennessee and Cumberland River Valleys, 214-242. Center for Field Biology, Clarksville, Tennessee, USA.
15. ERICKSON, R. O., L. G. BRENNER, AND J. WRAIGHT. 1942. Dolomitic glades of east-central Missouri. Annals of the Missouri Botanical Garden 29: 89-101.
16. GASTONY, G. J., AND C. H. HAUFLER. 1976. Chromosome numbers and apomixis in the fern genus Bommeria (Gymnogrammaceae). Biotropica 8: 1-11.
17. GASTONY, G. J., AND D. R. ROLLO. 1998. Cheilanthoid ferns (Pteridaceae: Cheilanthoideae) in the southwestern United States and adjacent Mexico: A molecular phylogenetic reassessment of generic lines. Aliso 17: 131-144.
18. GASTONY, G. J., AND M. D. WINDHAM. 1989. Species concepts in pteridophytes: The treatment and defi nition of agamosporous species. American Fern Journal 79: 65-77.
19. GASTONY, G. J., AND G. YATSKIEVYCH. 1992. Maternal inheritance of the chloroplast and mitochondrial genomes in cheilanthoid ferns. American Journal of Botany 79: 716-722.
20. GRUSZ, A. L., M. D. WINDHAM, AND K. M. PRYER. 2009. Deciphering the origins of apomictic polyploids in the Cheilanthes yavapensis complex (Pteridaceae). American Journal of Botany 96: 1636-1645.
21. HEIKENS, A. L., AND P. A. ROBERTSON. 1995. Classifi cation of barrens and other natural xeric forest openings in southern Illinois. Bulletin of the Torrey Botanical Club 122: 203-214.
22. HEVLY, R. H. 1965. Studies of the sinuous cloak-fern (Notholaena sinuata) complex. Journal of the Arizona Academy of Science 3: 205-208.
23. HOLLAND, B. R., A. C. CLARKE, AND H. M. MEUDT. 2008. Optimizing automated AFLP scoring parameters to improve phylogenetic resolution. Systematic Biology 57: 347-366.
24. HUELSENBECK, J. P., AND F. RONQUIST. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
25. HUFF, D. R., R. PEAKALL, AND P. E. SMOUSE. 1993. RAPD variation within and among natural populations of outcrossing buffalograss Buchloë dactyloides (Nutt.) Engelm. Theoretical and Applied Genetics 86: 927-934.
26. KEARNEY, M. 2005. Hybridization, glaciation and geographical parthenogenesis. Trends in Ecology & Evolution 20: 495-502.
27. KEENER, C. S. 1983. Distribution and biohistory of the endemic fl ora of the mid-Appalachian shale barrens. Botanical Review 49: 65-115.
28. KIRKPATRICK, R. E. B. 2007. Investigating the monophyly of Pellaea (Pteridaceae) in the context of a phylogenetic analysis of cheilanthoid ferns. Systematic Botany 32: 504-518
29. MCVAUGH, R. 1943. The vegetation of the granitic fl at-rocks of the southeastern United States. Ecological Monographs 13: 119-166.
30. MEIMBERG, H., K. J. RICE, N. F. MILAN, C. C. NJOKU, AND J. K. MCKAY. 2009. Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae). American Journal of Botany 96: 1262-1273.
31. MICKEL, J. T., AND A. R. SMITH. 2004. Pteridophytes of Mexico. Memoirs of the New York Botanical Garden, vol. 88. New York Botanical Garden Press, Bronx, New York, USA.
32. MORITZ, C., AND K. BI. 2011. Spontaneous speciation by ploidy elevation: Laboratory synthesis of a new clonal vertebrate. Proceedings of the National Academy of Sciences, USA 108: 9733-9734.
33. MORZENTI, V. M. 1966. Morphological and cytological data on southeastern United States species of the Asplenium heterochroum-resiliens complex. American Fern Journal 56: 167-177.
34. PALMER, E. J. 1922. The forest fl ora of the Ozark region. Journal of the Arnold Arboretum 2: 216-232.
35. PEAKALL, R., AND P. E. SMOUSE. 2006. GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6: 288-295.
36. PERRIE, L. R., L. D. SHEPHERD, P. J. DE LANGE, AND P. J. BROWNSEY. 2010. Parallel polyploid speciation: Distinct sympatric gene-pools of recurrently derived allo-octoploid Asplenium ferns. Molecular Ecology 19: 2916-2932.
37. RAMBAUT, A. 2002. Se-Al: Sequence alignment editor, version 2.0a11. Available at website http://tree.bio.ed.ac.uk/software/seal/.
38. RAMBAUT, A. 2009. FigTree, tree fi gure drawing tool, version 1.3.1. Available at website http://tree.bio.ed.ac.uk/software/fi gtree/.
39. RAMBAUT, A., AND A. J. DRUMMOND. 2009. Tracer, MCMC trace analysis tool, version 1.5. Available at website http://tree.bio.ed.ac.uk/software/ tracer/.
40. REEVES, P. A., AND C. M. RICHARDS. 2009. Accurate inference of subtle population structure (and other genetic discontinuities) using principal coordinates. PLoS ONE 4: e4269.
41. REEVES, P. A., AND C. M. RICHARDS. 2011. Species delimitation under the general lineage concept: An Empirical example using wild north american hops (Cannabaceae: Humulus lupulus). Systematic Biology 60: 45-59.
42. ROTHFELS, C. J., M. D. WINDHAM, A. L. GRUSZ, G. J. GASTONY, AND K. M. PRYER. 2008. Toward a monophyletic Notholaena (Pteridaceae): Resolving patterns of evolutionary convergence in xeric-adapted ferns. Taxon 57: 712-724.
43. SAMPSON, J. F., AND M. BYRNE. 2012. Genetic diversity and multiple origins of polyploid Atriplex nummularia Lindl. (Chenopodiaceae). Biological Journal of the Linnean Society 105: 218-230.
44. SCHAACK, S. 2008. Daphnia comes of age: An ecological model in the genomic era. Molecular Ecology 17: 1634-1635.
45. SCHUETTPELZ, E., AND K. M. PRYER. 2007. Fern phylogeny inferred from 400 leptosporangiate species and three plastid genes. Taxon 56: 1037-1050.
46. SIMON, J. C., F. DELMOTTE, C. RISPE, AND T. CREASE. 2003. Phylogenetic relationships between parthenogens and their sexual relatives: The possible routes to parthenogenesis in animals. Biological Journal of the Linnean Society 79: 151-163.
47. SOLTIS, D. E., R. J. A. BUGGS, J. J. DOYLE, AND P. S. SOLTIS. 2010. What we still don't know about polyploidy. Taxon 59: 1387-1403.
48. SOLTIS, D. E., AND P. S. S OLTIS. 1 993. M olecular data and the dynamic nature of polyploidy. Critical Reviews in Plant Sciences 12: 243-273.
49. SOLTIS, D. E., AND P. S. SOLTIS. 1999. Polyploidy: Recurrent formation and genome evolution. Trends in Ecology & Evolution 14: 348-352.
50. SOLTIS, D. E., P. S. SOLTIS, AND J. A. TATE. 2003. Advances in the study of polyploid since Plant Speciation. New Phytologist 161: 173-191.
51. SUOMALAINEN, E., A. SAURA, AND J. LOKKI. 2000. Cytology and evolution in parthenogenesis. CRC Press, Boca Raton, Florida, USA.
52. SWOFFORD, D. L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4b10.0. Sinauer, Sunderland, Massachusetts, USA.
53. THIERS, B. 2012 [continuously updated]. Index herbariorum: A global directory of public herbaria and associated staff. New York Botanical Garden's Virtual Herbarium. Website http://sweetgum.nybg.org/ih/.
54. THOMPSON, S. L., AND J. WHITTON. 2006. Patterns of recurrent evolution and geographic parthenogenesis within apomictic polyploid Easter daises (Townsendia hookeri). Molecular Ecology 15: 3389-3400.
55. TRYBUSH, S., S. HANLEY, K. H. C HO, ET AL. 2006. Getting the most out of fl uorescent amplifi ed fragment length polymorphism. Canadian Journal of Botany 84: 1347-1354.
56. VAN EE, B. W., N. JELINSKI, P. E. BERRY, AND A. L. HIPP. 2006. Phylogeny and biogeography of Croton alabamensis (Euphorbiaceae), a rare shrub from Texas and Alabama, using DNA sequence and AFLP data. Molecular Ecology 15: 2735-2751.
57. VERHOEVEN, K. J. F., P. J. VAN DIJK, AND A. BIERE. 2010. Changes in genomic methylation patterns during the formation of triploid asexual dandelion lineages. Molecular Ecology 19: 315-324.
58. VOS, P., R. HOGERS, M. BLEEKER, ET AL. 1995. AFLP: A new technique for DNA fi ngerprinting. Nucleic Acids Research 23: 4407-4414.
59. WALKER, T. G. 1962. Cytology and evolution in the fern genus Pteris L. Evolution 16: 27-43.
60. WALKER, T. G. 1979. The cytogenetics of ferns. In A. F. Dyer [ed.], The experimental biology of ferns, 87-132. Academic Press, London, UK.
61. WEBB, D. H., H. R. DESELM, AND W. M. DENNIS. 1997. Studies of prairie barrens of northwestern Alabama. Castanea 62: 173-184.
62. WERTH, C. R., S. I. GUTTMAN, AND W. H. ESHBAUGH. 1985. Recurring origins of allopolyploid species in Asplenium. Science 228: 731-733.
63. WHITLOCK, R., H. HIPPERSON, M. MANNARELLI, R. K. BUTLIN, AND T. BURKE. 2008. An objective, rapid and reproducible method for scoring AFLP peak-height data that minimizes genotyping error. Molecular Ecology Resources 8: 725-735.
64. WHITTIER, D. P. 1965. Obligate apogamy in Cheilanthes tomentosa and C. alabamensis. Botanical Gazette 126: 275-281.
65. WU, L. L., X. K. CUI, R. I. MILNE, Y. S. SUN, AND J. Q. L IU. 2010. Multiple autopolyploidizations and range expansion of Allium przewalskianum Regel. (Alliaceae) in the Qinghai-Tibetan Plateau. Molecular Ecology 19: 1691-1704