-
1
-
-
0002317514
-
Natural products (secondary metabolites)
-
In: Buchanan B, Gruissem W, Jones R, editors, Rockville MD: American Society of Plant Biologists
-
Croteau RB, Kutchan T, Lewis NG (2000) Natural products (secondary metabolites). In: Buchanan B, Gruissem W, Jones R, editors. Biochemistry and Molecular Biology of Plants. Rockville MD: American Society of Plant Biologists. 1250-1268.
-
(2000)
Biochemistry and Molecular Biology of Plants
, pp. 1250-1268
-
-
Croteau, R.B.1
Kutchan, T.2
Lewis, N.G.3
-
2
-
-
33745455746
-
Early steps in isoprenoid biosynthesis: multilevel regulation of the supply of common precursors in plant cells
-
Rodríguez-Concepción M, (2006) Early steps in isoprenoid biosynthesis: multilevel regulation of the supply of common precursors in plant cells. Phytochem Rev 5: 1-15.
-
(2006)
Phytochem Rev
, vol.5
, pp. 1-15
-
-
Rodríguez-Concepción, M.1
-
3
-
-
0034672694
-
Isoprenyl diphosphate synthases
-
Wang KC, Ohnuma S, (2000) Isoprenyl diphosphate synthases. Biochim Biophys Acta 1529: 33-48.
-
(2000)
Biochim Biophys Acta
, vol.1529
, pp. 33-48
-
-
Wang, K.C.1
Ohnuma, S.2
-
4
-
-
70849092902
-
New insights into short-chain prenyltransferases: structural features, evolutionary history and potential for selective inhibition
-
Vandermoten S, Haubruge E, Cusson M, (2009) New insights into short-chain prenyltransferases: structural features, evolutionary history and potential for selective inhibition. Cel Mol Life Sci 66: 3685-3695.
-
(2009)
Cel Mol Life Sci
, vol.66
, pp. 3685-3695
-
-
Vandermoten, S.1
Haubruge, E.2
Cusson, M.3
-
5
-
-
80053596961
-
Terpene specialized metabolism in Arabidopsis thaliana
-
Tholl D, Sungbeon L, (2011) Terpene specialized metabolism in Arabidopsis thaliana. The Arabidopsis Book 9: e0143 doi:10.1043/tab.0143.
-
(2011)
The Arabidopsis Book
, vol.9
-
-
Tholl, D.1
Sungbeon, L.2
-
6
-
-
0000037101
-
Inhibition of growth of cultured tobacco cells at low concentrations of lovastatin is reversed by cytokinin
-
Crowell DN, Salaz MS, (1992) Inhibition of growth of cultured tobacco cells at low concentrations of lovastatin is reversed by cytokinin. Plant Physiol 100: 2090-2095.
-
(1992)
Plant Physiol
, vol.100
, pp. 2090-2095
-
-
Crowell, D.N.1
Salaz, M.S.2
-
7
-
-
0035999890
-
Overexpression of Arabidopsis thaliana farnesyl diphosphate synthase (FPS1S) in transgenic Arabidopsis induces a cell death/senescence-like response and reduced cytokinin levels
-
Masferrer A, Arró M, Manzano D, Schaller H, Fernandez-Busquets X, et al. (2002) Overexpression of Arabidopsis thaliana farnesyl diphosphate synthase (FPS1S) in transgenic Arabidopsis induces a cell death/senescence-like response and reduced cytokinin levels. Plant J 30: 123-132.
-
(2002)
Plant J
, vol.30
, pp. 123-132
-
-
Masferrer, A.1
Arró, M.2
Manzano, D.3
Schaller, H.4
Fernandez-Busquets, X.5
-
8
-
-
7044220574
-
The metabolic imbalance underlying lesion formation in Arabidopsis thaliana overexpressing farnesyl diphosphate synthase (isoform 1S) leads to oxidative stress and is triggered by the developmental decline of endogenous HMGR activity
-
Manzano D, Fernández-Busquets X, Schaller H, González V, Boronat A, et al. (2004) The metabolic imbalance underlying lesion formation in Arabidopsis thaliana overexpressing farnesyl diphosphate synthase (isoform 1S) leads to oxidative stress and is triggered by the developmental decline of endogenous HMGR activity. Planta 219: 982-992.
-
(2004)
Planta
, vol.219
, pp. 982-992
-
-
Manzano, D.1
Fernández-Busquets, X.2
Schaller, H.3
González, V.4
Boronat, A.5
-
9
-
-
33745191931
-
Overexpression of farnesyl diphosphate synthase in Arabidopsis mitochondria triggers light-dependent lesion formation and alters cytokinin homeostasis
-
Manzano D, Busquets A, Closa M, Hoyerová K, Schaller H, et al. (2006) Overexpression of farnesyl diphosphate synthase in Arabidopsis mitochondria triggers light-dependent lesion formation and alters cytokinin homeostasis. Plant Mol Biol 61: 195-213.
-
(2006)
Plant Mol Biol
, vol.61
, pp. 195-213
-
-
Manzano, D.1
Busquets, A.2
Closa, M.3
Hoyerová, K.4
Schaller, H.5
-
10
-
-
0028893204
-
Constitutive expression of a fruit phytoene synthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway
-
Fray RG, Wallace A, Fraser PD, Valero D, Hedden P, et al. (1995) Constitutive expression of a fruit phytoene synthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway. Plant J 8: 693-701.
-
(1995)
Plant J
, vol.8
, pp. 693-701
-
-
Fray, R.G.1
Wallace, A.2
Fraser, P.D.3
Valero, D.4
Hedden, P.5
-
11
-
-
0029163233
-
Farnesylpyrophosphate synthase from white lupin: molecular cloning, expression, and purification of the expressed protein
-
Attucci S, Aitken SM, Gulick PJ, Ibrahim RK, (1995) Farnesylpyrophosphate synthase from white lupin: molecular cloning, expression, and purification of the expressed protein. Arch Biochem Biophys 321: 493-500.
-
(1995)
Arch Biochem Biophys
, vol.321
, pp. 493-500
-
-
Attucci, S.1
Aitken, S.M.2
Gulick, P.J.3
Ibrahim, R.K.4
-
12
-
-
0029868992
-
Arabidopsis thaliana contains two differentially expressed farnesyl-diphosphate synthase genes
-
Cunillera N, Arró M, Delourme D, Karst F, Boronat A, et al. (1996) Arabidopsis thaliana contains two differentially expressed farnesyl-diphosphate synthase genes. J Biol Chem 271: 7774-7780.
-
(1996)
J Biol Chem
, vol.271
, pp. 7774-7780
-
-
Cunillera, N.1
Arró, M.2
Delourme, D.3
Karst, F.4
Boronat, A.5
-
13
-
-
0030919438
-
The Arabidopsis thaliana FPS1 gene generates a novel mRNA that encodes a mitochondrial farnesyl-diphosphate synthase isoform
-
Cunillera N, Boronat A, Ferrer A, (1997) The Arabidopsis thaliana FPS1 gene generates a novel mRNA that encodes a mitochondrial farnesyl-diphosphate synthase isoform. J Biol Chem 272: 15381-15388.
-
(1997)
J Biol Chem
, vol.272
, pp. 15381-15388
-
-
Cunillera, N.1
Boronat, A.2
Ferrer, A.3
-
14
-
-
0029971880
-
Identification of a maize endosperm-specific cDNA encoding farnesyl pyrophosphate synthetase
-
Li C-P, Larkins BA, (1996) Identification of a maize endosperm-specific cDNA encoding farnesyl pyrophosphate synthetase. Gene 171: 193-196.
-
(1996)
Gene
, vol.171
, pp. 193-196
-
-
Li, C.-P.1
Larkins, B.A.2
-
15
-
-
0030221216
-
Cloning, characterization, and heterologous expression of cDNAs for farnesyl diphosphate synthase from the guayule rubber plant reveals that this prenyltransferase occurs in rubber particles
-
Pan Z, Herickhoff L, Backhaus RA, (1996) Cloning, characterization, and heterologous expression of cDNAs for farnesyl diphosphate synthase from the guayule rubber plant reveals that this prenyltransferase occurs in rubber particles. Arch Biochem Biophys 332: 196-204.
-
(1996)
Arch Biochem Biophys
, vol.332
, pp. 196-204
-
-
Pan, Z.1
Herickhoff, L.2
Backhaus, R.A.3
-
16
-
-
0033103646
-
Localization of farnesyl diphosphate synthase in chloroplasts
-
Sanmiya K, Ueno O, Matsuoka M, Yamamoto N, (1999) Localization of farnesyl diphosphate synthase in chloroplasts. Plant Cell Physiol 40: 348-354.
-
(1999)
Plant Cell Physiol
, vol.40
, pp. 348-354
-
-
Sanmiya, K.1
Ueno, O.2
Matsuoka, M.3
Yamamoto, N.4
-
17
-
-
0033841023
-
LEFPS1, a tomato farnesyl pyrophosphate gene highly expressed during early fruit development
-
Gaffe J, Bru JP, Causse M, Vidal A, Stamitti-Bert L, et al. (2000) LEFPS1, a tomato farnesyl pyrophosphate gene highly expressed during early fruit development. Plant Physiol 123: 1351-1362.
-
(2000)
Plant Physiol
, vol.123
, pp. 1351-1362
-
-
Gaffe, J.1
Bru, J.P.2
Causse, M.3
Vidal, A.4
Stamitti-Bert, L.5
-
18
-
-
0042357078
-
Enzymes encoded by the farnesyl diphosphate synthase gene family in the big sagebrush Artemisia tridentata ssp. spiciformis
-
Hemmerlin A, Rivera SB, Erickson HK, Poulter CD, (2003) Enzymes encoded by the farnesyl diphosphate synthase gene family in the big sagebrush Artemisia tridentata ssp. spiciformis. J Biol Chem 278: 32132-32140.
-
(2003)
J Biol Chem
, vol.278
, pp. 32132-32140
-
-
Hemmerlin, A.1
Rivera, S.B.2
Erickson, H.K.3
Poulter, C.D.4
-
19
-
-
33947633558
-
Molecular genetics of plant sterol backbone synthesis
-
Suzuki M, Muranaka T, (2007) Molecular genetics of plant sterol backbone synthesis. Lipids 42: 47-54.
-
(2007)
Lipids
, vol.42
, pp. 47-54
-
-
Suzuki, M.1
Muranaka, T.2
-
20
-
-
84859126293
-
Structure and dynamics of the isoprenoid pathway network
-
Vranovà E, Coman D, Gruissem W, (2012) Structure and dynamics of the isoprenoid pathway network. Mol Plant 5: 318-333.
-
(2012)
Mol Plant
, vol.5
, pp. 318-333
-
-
Vranovà, E.1
Coman, D.2
Gruissem, W.3
-
21
-
-
80053948077
-
The subcellular localization of periwinkle farnesyl diphosphate synthase provides insight into the role of peroxisome in isoprenoid biosynthesis
-
Thabet I, Guirimand G, Courdavault V, Papon N, Godet S, et al. (2011) The subcellular localization of periwinkle farnesyl diphosphate synthase provides insight into the role of peroxisome in isoprenoid biosynthesis. J Plant Physiol 168: 2110-2116.
-
(2011)
J Plant Physiol
, vol.168
, pp. 2110-2116
-
-
Thabet, I.1
Guirimand, G.2
Courdavault, V.3
Papon, N.4
Godet, S.5
-
22
-
-
57749092770
-
Peroxisomal localization of Arabidopsis isopentenyl diphosphate isomerases suggests that part of the plant isoprenoid mevalonic acid pathway is compartmentalized to peroxisomes
-
Sapir-Mir M, Mett A, Belausov E, Tal-Meshulam S, Frydman A, et al. (2008) Peroxisomal localization of Arabidopsis isopentenyl diphosphate isomerases suggests that part of the plant isoprenoid mevalonic acid pathway is compartmentalized to peroxisomes. Plant Physiol 148: 1219-1228.
-
(2008)
Plant Physiol
, vol.148
, pp. 1219-1228
-
-
Sapir-Mir, M.1
Mett, A.2
Belausov, E.3
Tal-Meshulam, S.4
Frydman, A.5
-
23
-
-
80255123337
-
Peroxisomal localisation of the final steps of the mevalonic acid pathway in planta
-
Simkin AJ, Guirimand G, Papon N, Courdavault V, Thabet I, et al. (2011) Peroxisomal localisation of the final steps of the mevalonic acid pathway in planta. Planta 234: 903-914.
-
(2011)
Planta
, vol.234
, pp. 903-914
-
-
Simkin, A.J.1
Guirimand, G.2
Papon, N.3
Courdavault, V.4
Thabet, I.5
-
24
-
-
33846991643
-
Localization of the pre-squalene segment of the isoprenoid biosynthetic pathway in mammalian peroxisomes
-
Kovacs WJ, Tape KN, Shackelford JE, Duan X, Kasumov T, et al. (2007) Localization of the pre-squalene segment of the isoprenoid biosynthetic pathway in mammalian peroxisomes. Histochem Cell Biol 127: 273-290.
-
(2007)
Histochem Cell Biol
, vol.127
, pp. 273-290
-
-
Kovacs, W.J.1
Tape, K.N.2
Shackelford, J.E.3
Duan, X.4
Kasumov, T.5
-
25
-
-
0034485767
-
Spatial and temporal patterns of GUS expression directed by 5′ regions of the Arabidopsis thaliana farnesyl diphosphate synthase genes FPS1 and FPS2
-
Cunillera N, Boronat A, Ferrer A, (2000) Spatial and temporal patterns of GUS expression directed by 5′ regions of the Arabidopsis thaliana farnesyl diphosphate synthase genes FPS1 and FPS2. Plant Mol Biol 44: 745-758.
-
(2000)
Plant Mol Biol
, vol.44
, pp. 745-758
-
-
Cunillera, N.1
Boronat, A.2
Ferrer, A.3
-
26
-
-
77954946628
-
The Arabidopsis thaliana FPP synthase isozymes have overlapping and specific functions in isoprenoid biosynthesis, and complete loss of FPP synthase activity causes early developmental arrest
-
Closa M, Vranovà E, Bortolotti C, Bigler L, Arró M, et al. (2010) The Arabidopsis thaliana FPP synthase isozymes have overlapping and specific functions in isoprenoid biosynthesis, and complete loss of FPP synthase activity causes early developmental arrest. Plant J 63: 512-525.
-
(2010)
Plant J
, vol.63
, pp. 512-525
-
-
Closa, M.1
Vranovà, E.2
Bortolotti, C.3
Bigler, L.4
Arró, M.5
-
27
-
-
0032933485
-
Mevalonate biosynthesis in plants
-
Bach TJ, Boronat A, Campos N, Ferrer A, Vollack KU, (1999) Mevalonate biosynthesis in plants. Crit Rev Biochem Mol Biol 34: 107-122.
-
(1999)
Crit Rev Biochem Mol Biol
, vol.34
, pp. 107-122
-
-
Bach, T.J.1
Boronat, A.2
Campos, N.3
Ferrer, A.4
Vollack, K.U.5
-
28
-
-
43849102509
-
Differential modulation of membrane structure and fluctuations by plant sterols and cholesterol
-
Hodzic A, Rappolt M, Amenitsch H, Laggner P, Pabst G, (2008) Differential modulation of membrane structure and fluctuations by plant sterols and cholesterol. Biophys J 94: 3935-3944.
-
(2008)
Biophys J
, vol.94
, pp. 3935-3944
-
-
Hodzic, A.1
Rappolt, M.2
Amenitsch, H.3
Laggner, P.4
Pabst, G.5
-
29
-
-
0142025017
-
Biosynthesis and metabolism of brassinosteroids
-
Fujioka S, Yokota T, (2003) Biosynthesis and metabolism of brassinosteroids. Annu Rev Plant Biol 54: 137-164.
-
(2003)
Annu Rev Plant Biol
, vol.54
, pp. 137-164
-
-
Fujioka, S.1
Yokota, T.2
-
30
-
-
0034659406
-
FACKEL is a sterol C-14 reductase required for organized cell division and expansion in Arabidopsis embryogenesis
-
Schrick K, Mayer U, Horrichs A, Kuhnt C, Bellini C, et al. (2000) FACKEL is a sterol C-14 reductase required for organized cell division and expansion in Arabidopsis embryogenesis. Genes Dev 14: 1471-1484.
-
(2000)
Genes Dev
, vol.14
, pp. 1471-1484
-
-
Schrick, K.1
Mayer, U.2
Horrichs, A.3
Kuhnt, C.4
Bellini, C.5
-
31
-
-
0035984148
-
Interactions between sterol biosynthesis genes in embryonic development of Arabidopsis
-
Schrick K, Mayer U, Martin G, Bellini C, Kuhnt C, et al. (2002) Interactions between sterol biosynthesis genes in embryonic development of Arabidopsis. Plant J 31: 61-73.
-
(2002)
Plant J
, vol.31
, pp. 61-73
-
-
Schrick, K.1
Mayer, U.2
Martin, G.3
Bellini, C.4
Kuhnt, C.5
-
32
-
-
0025169595
-
Purification and characterization of farnesyl pyrophosphate synthase from Capsicum annuum
-
Hugueney P, Camara B, (1990) Purification and characterization of farnesyl pyrophosphate synthase from Capsicum annuum. FEBS Lett 273: 235-238.
-
(1990)
FEBS Lett
, vol.273
, pp. 235-238
-
-
Hugueney, P.1
Camara, B.2
-
33
-
-
0035864379
-
Partial purification and characterization of the short-chain prenyltransferases, geranyl diphospate synthase and farnesyl diphosphate synthase, from Abies grandis (grand fir)
-
Tholl D, Croteau R, Gershenzon J, (2001) Partial purification and characterization of the short-chain prenyltransferases, geranyl diphospate synthase and farnesyl diphosphate synthase, from Abies grandis (grand fir). Arch Biochem Biophys 386: 233-242.
-
(2001)
Arch Biochem Biophys
, vol.386
, pp. 233-242
-
-
Tholl, D.1
Croteau, R.2
Gershenzon, J.3
-
34
-
-
35349007977
-
Cloning and characterization of isoprenyl diphosphate synthases with farnesyl diphosphate and geranylgeranyl diphosphate synthase activity from Norway spruce (Picea abies) and their relation to induced oleoresin formation
-
Schmidt A, Gershenzon J, (2007) Cloning and characterization of isoprenyl diphosphate synthases with farnesyl diphosphate and geranylgeranyl diphosphate synthase activity from Norway spruce (Picea abies) and their relation to induced oleoresin formation. Phytochemistry 68: 2649-2659.
-
(2007)
Phytochemistry
, vol.68
, pp. 2649-2659
-
-
Schmidt, A.1
Gershenzon, J.2
-
35
-
-
21844439989
-
Crystal structure of an iron-dependent group III dehydrogenase that interconverts l-lactaldehyde and l-1,2-propanediol in Escherichia coli
-
Montella C, Bellsolell L, Pérez-Luque R, Badía J, Baldomà L, et al. (2005) Crystal structure of an iron-dependent group III dehydrogenase that interconverts l-lactaldehyde and l-1,2-propanediol in Escherichia coli. J Bacteriol 187: 4957-4966.
-
(2005)
J Bacteriol
, vol.187
, pp. 4957-4966
-
-
Montella, C.1
Bellsolell, L.2
Pérez-Luque, R.3
Badía, J.4
Baldomà, L.5
-
36
-
-
0024825088
-
High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product
-
Brinkmann U, Mattes RE, Buckel P, (1989) High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product. Gene 85: 109-114.
-
(1989)
Gene
, vol.85
, pp. 109-114
-
-
Brinkmann, U.1
Mattes, R.E.2
Buckel, P.3
-
37
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK, (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
38
-
-
71849104860
-
Protein measurement with the Folin phenol reagent
-
Lowry OH, Rosebrough NJ, Farr AL, Randall RJ, (1951) Protein measurement with the Folin phenol reagent. J Biol Chem 193: 265-75.
-
(1951)
J Biol Chem
, vol.193
, pp. 265-275
-
-
Lowry, O.H.1
Rosebrough, N.J.2
Farr, A.L.3
Randall, R.J.4
-
39
-
-
0028834801
-
Bacterial expression of the catalytic domain of 3-hydroxy-3-methylglutaryl-CoA reductase (isoform HMGR1) from Arabidopsis thaliana, and its inactivation by phosphorylation at Ser577 by Brassica oleracea 3-hydroxy-3-methylglutaryl-CoA reductase kinase
-
Dale S, Arró M, Becerra B, Morrice NG, Boronat A, et al. (1995) Bacterial expression of the catalytic domain of 3-hydroxy-3-methylglutaryl-CoA reductase (isoform HMGR1) from Arabidopsis thaliana, and its inactivation by phosphorylation at Ser577 by Brassica oleracea 3-hydroxy-3-methylglutaryl-CoA reductase kinase. Eur J Biochem 233: 506-513.
-
(1995)
Eur J Biochem
, vol.233
, pp. 506-513
-
-
Dale, S.1
Arró, M.2
Becerra, B.3
Morrice, N.G.4
Boronat, A.5
-
40
-
-
37249005205
-
The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability
-
Niesen FH, Berglund H, Vedadi M, (2007) The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability. Nat Protoc 2: 2212-2221.
-
(2007)
Nat Protoc
, vol.2
, pp. 2212-2221
-
-
Niesen, F.H.1
Berglund, H.2
Vedadi, M.3
-
41
-
-
33646367241
-
Structural basis for the exceptional in vivo efficacy of bisphosphonate drugs
-
Rondeau J-M, Bitsch F, Bourgier E, Geiser M, Hemmig R, et al. (2006) Structural basis for the exceptional in vivo efficacy of bisphosphonate drugs. Chem Med Chem 1: 267-273.
-
(2006)
Chem Med Chem
, vol.1
, pp. 267-273
-
-
Rondeau, J.-M.1
Bitsch, F.2
Bourgier, E.3
Geiser, M.4
Hemmig, R.5
-
42
-
-
49649114605
-
Protein structure modeling with MODELLER
-
Eswar N, Eramian D, Webb B, Shen MY, Sali A, (2008) Protein structure modeling with MODELLER. Methods Mol Biol 426: 145-159.
-
(2008)
Methods Mol Biol
, vol.426
, pp. 145-159
-
-
Eswar, N.1
Eramian, D.2
Webb, B.3
Shen, M.Y.4
Sali, A.5
-
43
-
-
3242887695
-
Protein structure prediction and analysis using the Robetta server
-
(Web Server issue)
-
Kim DE, Chivian D, Baker D (2004) Protein structure prediction and analysis using the Robetta server. Nucleic Acids Res. 32 (Web Server issue), W526-531.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 526-531
-
-
Kim, D.E.1
Chivian, D.2
Baker, D.3
-
44
-
-
77950673061
-
Practically useful: what the Rosetta protein modeling suite can do for you
-
Kaufmann KW, Lemmon GH, Deluca SL, Sheehan JH, Meiler J, (2010) Practically useful: what the Rosetta protein modeling suite can do for you. Biochemistry 49: 2987-2998.
-
(2010)
Biochemistry
, vol.49
, pp. 2987-2998
-
-
Kaufmann, K.W.1
Lemmon, G.H.2
Deluca, S.L.3
Sheehan, J.H.4
Meiler, J.5
-
45
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
(Web Server issue)
-
Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, et al. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35 (Web Server issue), W375-383.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 375-383
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
-
46
-
-
79551470095
-
Role of conformational sampling in computing mutation-induced changes in protein structure and stability
-
Kellogg EH, Leaver-Fay A, Baker D, (2011) Role of conformational sampling in computing mutation-induced changes in protein structure and stability. Proteins 79: 830-838.
-
(2011)
Proteins
, vol.79
, pp. 830-838
-
-
Kellogg, E.H.1
Leaver-Fay, A.2
Baker, D.3
-
47
-
-
58149247893
-
Predicting free energy changes using structural ensembles
-
Benedix A, Becker CM, de Groot BL, Caflisch A, Böckmann RA, (2009) Predicting free energy changes using structural ensembles. Nat Methods 6: 3-4.
-
(2009)
Nat Methods
, vol.6
, pp. 3-4
-
-
Benedix, A.1
Becker, C.M.2
de Groot, B.L.3
Caflisch, A.4
Böckmann, R.A.5
-
48
-
-
0032447801
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough SJ, Bent AF, (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
49
-
-
0036060580
-
An improved clearing method for GUS staining in Arabidopsis endosperm
-
Stangeland B, Salehian Z, (2002) An improved clearing method for GUS staining in Arabidopsis endosperm. Plant Mol Biol Rep 20: 107-114.
-
(2002)
Plant Mol Biol Rep
, vol.20
, pp. 107-114
-
-
Stangeland, B.1
Salehian, Z.2
-
50
-
-
34548487513
-
A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants
-
Nelson BK, Cai X, Nebenführ A, (2007) A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J 51: 1126-1136.
-
(2007)
Plant J
, vol.51
, pp. 1126-1136
-
-
Nelson, B.K.1
Cai, X.2
Nebenführ, A.3
-
51
-
-
0032573210
-
A viral suppressor of gene silencing in plants
-
Anandalakshmi R, Pruss GJ, Ge X, Marathe R, Mallory AC, et al. (1998) A viral suppressor of gene silencing in plants. Proc Natl Acad Sci USA 95: 13079-13084.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 13079-13084
-
-
Anandalakshmi, R.1
Pruss, G.J.2
Ge, X.3
Marathe, R.4
Mallory, A.C.5
-
52
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E, Henrick K, (2007) Inference of macromolecular assemblies from crystalline state. J Mol Biol 372: 774-797.
-
(2007)
J Mol Biol
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
53
-
-
82355163689
-
Translational control mechanisms in metabolic regulation: critical role of RNA binding proteins, microRNAs, and cytoplasmic RNA granules
-
Adeli K, (2011) Translational control mechanisms in metabolic regulation: critical role of RNA binding proteins, microRNAs, and cytoplasmic RNA granules. Am J Physiol Endocrinol Metab 301: E1051-E1064.
-
(2011)
Am J Physiol Endocrinol Metab
, vol.301
-
-
Adeli, K.1
-
54
-
-
49649116679
-
A small stem-loop element directs internal initiation of the URE2 internal ribosome entry site in Saccharomyces cerevisiae
-
Reineke LC, Komar AA, Caprara MG, Merrick WC, (2008) A small stem-loop element directs internal initiation of the URE2 internal ribosome entry site in Saccharomyces cerevisiae. J Biol Chem 283: 19011-19025.
-
(2008)
J Biol Chem
, vol.283
, pp. 19011-19025
-
-
Reineke, L.C.1
Komar, A.A.2
Caprara, M.G.3
Merrick, W.C.4
-
55
-
-
80051757198
-
Secondary structure and the role in translation initiation of the 5′-terminal region of p53 mRNA
-
Blaszczyk L, Ciesiolka J, (2011) Secondary structure and the role in translation initiation of the 5′-terminal region of p53 mRNA. Biochemistry 50: 7080-7092.
-
(2011)
Biochemistry
, vol.50
, pp. 7080-7092
-
-
Blaszczyk, L.1
Ciesiolka, J.2
-
56
-
-
11144255773
-
Cloning and characterization of farnesyl diphosphate synthase from the rubber-producing mushroom Lactarius chrysorrheus
-
Mekkriengkrai D, Sando T, Hirooka K, Sakdapipanich J, Tanaka Y, et al. (2004) Cloning and characterization of farnesyl diphosphate synthase from the rubber-producing mushroom Lactarius chrysorrheus. Biosci Biotechnol Biochem 68: 2360-2368.
-
(2004)
Biosci Biotechnol Biochem
, vol.68
, pp. 2360-2368
-
-
Mekkriengkrai, D.1
Sando, T.2
Hirooka, K.3
Sakdapipanich, J.4
Tanaka, Y.5
-
57
-
-
0035698787
-
pH: Signal and messenger in plant cells
-
Felle HH, (2001) pH: Signal and messenger in plant cells. Plant Biol 3: 577-591.
-
(2001)
Plant Biol
, vol.3
, pp. 577-591
-
-
Felle, H.H.1
-
58
-
-
79953708576
-
Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism
-
Ito J, Batth TS, Petzold CJ, Redding-Johansson AM, Mukhopadhyay A, et al. (2011) Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. J Proteome Res 10, 1571-1582.
-
(2011)
J Proteome Res
, vol.10
, pp. 1571-1582
-
-
Ito, J.1
Batth, T.S.2
Petzold, C.J.3
Redding-Johansson, A.M.4
Mukhopadhyay, A.5
-
59
-
-
37249016441
-
Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms
-
Reumann S, Babujee L, Ma C, Wienkoop S, Siemsen T, et al. (2007) Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell 19, 3170-3193.
-
(2007)
Plant Cell
, vol.19
, pp. 3170-3193
-
-
Reumann, S.1
Babujee, L.2
Ma, C.3
Wienkoop, S.4
Siemsen, T.5
-
60
-
-
66149148256
-
In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes
-
Reumann S, Quan S, Aung K, Yang P, Manandhar-Shrestha K, et al. (2009) In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Plant Physiol 150: 125-143.
-
(2009)
Plant Physiol
, vol.150
, pp. 125-143
-
-
Reumann, S.1
Quan, S.2
Aung, K.3
Yang, P.4
Manandhar-Shrestha, K.5
-
61
-
-
84900200099
-
Biosynthesis and regulation of alkaloids
-
In Pua EC, Davey M, editors, Springer Verlag, Berlin, Heidelberg
-
Guirimand G, Courdavault V, St-Pierre B, Burlat V (2010) Biosynthesis and regulation of alkaloids. In Pua EC, Davey M, editors. Plant Developmental Biology. Biotechnological Perspectives. Springer Verlag, Berlin, Heidelberg. vol. 2, 139-160.
-
(2010)
Plant Developmental Biology, Biotechnological Perspectives
, vol.2
, pp. 139-160
-
-
Guirimand, G.1
Courdavault, V.2
St-Pierre, B.3
Burlat, V.4
-
62
-
-
34848857004
-
Cloning, expression and characterization of a dipteran farnesyl diphosphate synthase
-
Sen SE, Trobaugh C, Béliveau C, Richard T, Cusson M, (2007) Cloning, expression and characterization of a dipteran farnesyl diphosphate synthase. Insect Biochem Mol Biol 37: 1198-1206.
-
(2007)
Insect Biochem Mol Biol
, vol.37
, pp. 1198-1206
-
-
Sen, S.E.1
Trobaugh, C.2
Béliveau, C.3
Richard, T.4
Cusson, M.5
-
63
-
-
58849153221
-
A new prokaryotic farnesyldiphosphate synthase from the octocoral Eunicea fusca: differential display, inverse PCR, cloning, and characterization
-
Ranzer LK, Brück TB, Brück WM, López JV, Kerr RG, (2009) A new prokaryotic farnesyldiphosphate synthase from the octocoral Eunicea fusca: differential display, inverse PCR, cloning, and characterization. Mar Biotechnol 11: 62-73.
-
(2009)
Mar Biotechnol
, vol.11
, pp. 62-73
-
-
Ranzer, L.K.1
Brück, T.B.2
Brück, W.M.3
López, J.V.4
Kerr, R.G.5
-
64
-
-
0027503220
-
Thermostable farnesyl diphosphate synthase of Bacillus stearothermophilus: molecular cloning, sequence determination, overproduction, and purification
-
Koyama T, Obata S, Osabe M, Takeshita A, Yokoyama K, et al. (1993) Thermostable farnesyl diphosphate synthase of Bacillus stearothermophilus: molecular cloning, sequence determination, overproduction, and purification. J Biochem (Tokyo) 113: 355-363.
-
(1993)
J Biochem (Tokyo)
, vol.113
, pp. 355-363
-
-
Koyama, T.1
Obata, S.2
Osabe, M.3
Takeshita, A.4
Yokoyama, K.5
-
65
-
-
22044457069
-
Farnesyl diphosphate synthase; regulation of product specificity
-
Szkopińska A, Plochocka D, (2005) Farnesyl diphosphate synthase; regulation of product specificity. Acta Biochim Polon 52: 45-55.
-
(2005)
Acta Biochim Polon
, vol.52
, pp. 45-55
-
-
Szkopińska, A.1
Plochocka, D.2
-
66
-
-
0034681181
-
Intersubunit location of the active site of farnesyl diphosphate synthase: Reconstruction of active enzymes by hybrid-type heteromeric dimers of site-directed mutants
-
Koyama T, Gotoh Y, Nishino T, (2000) Intersubunit location of the active site of farnesyl diphosphate synthase: Reconstruction of active enzymes by hybrid-type heteromeric dimers of site-directed mutants. Biochemistry 39: 463-469.
-
(2000)
Biochemistry
, vol.39
, pp. 463-469
-
-
Koyama, T.1
Gotoh, Y.2
Nishino, T.3
-
68
-
-
0029027430
-
Mutation at a single acidic amino acid enhances the halophilic behaviour of malate dehydrogenase from Haloarcula marismortui in physiological salts
-
Madern D, Pfister C, Zaccai G, (1995) Mutation at a single acidic amino acid enhances the halophilic behaviour of malate dehydrogenase from Haloarcula marismortui in physiological salts. Eur J Biochem 230: 1088-1095.
-
(1995)
Eur J Biochem
, vol.230
, pp. 1088-1095
-
-
Madern, D.1
Pfister, C.2
Zaccai, G.3
-
69
-
-
58149352549
-
Temperature adaptation of cytosolic malate dehydrogenases of limpets (genus Lottia): differences in stability and function due to minor changes in sequence correlate with biogeographic and vertical distributions
-
Dong Y, Somero GN, (2009) Temperature adaptation of cytosolic malate dehydrogenases of limpets (genus Lottia): differences in stability and function due to minor changes in sequence correlate with biogeographic and vertical distributions. J Exp Biol 212: 169-177.
-
(2009)
J Exp Biol
, vol.212
, pp. 169-177
-
-
Dong, Y.1
Somero, G.N.2
-
70
-
-
0034017055
-
Factors enhancing protein thermostability
-
Kumar S, Tsai C, (2000) Factors enhancing protein thermostability. Protein Eng 13: 179-191.
-
(2000)
Protein Eng
, vol.13
, pp. 179-191
-
-
Kumar, S.1
Tsai, C.2
-
72
-
-
84859128110
-
Organ and cell type-specific complementary expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana
-
Liu S-L, Baute GJ, Adams K, (2011) Organ and cell type-specific complementary expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana. Genome Biol Evol 3: 1419-1436.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1419-1436
-
-
Liu, S.-L.1
Baute, G.J.2
Adams, K.3
-
73
-
-
26944443125
-
Heat stress phenotypes of Arabidopsis thaliana mutants implicate multiple signalling pathways in the acquisition of thermotolerance
-
Larkindale J, Hall JD, Knight MR, Vierling E, (2005) Heat stress phenotypes of Arabidopsis thaliana mutants implicate multiple signalling pathways in the acquisition of thermotolerance. Plant Physiol 138: 882-897.
-
(2005)
Plant Physiol
, vol.138
, pp. 882-897
-
-
Larkindale, J.1
Hall, J.D.2
Knight, M.R.3
Vierling, E.4
-
74
-
-
0034088275
-
Isolation of Arabidopsis mutants lacking components of acquired thermotolerance
-
Burke JJ, O'Mahony PJ, Oliver MJ, (2000) Isolation of Arabidopsis mutants lacking components of acquired thermotolerance. Plant Physiol 123: 575-587.
-
(2000)
Plant Physiol
, vol.123
, pp. 575-587
-
-
Burke, J.J.1
O'Mahony, P.J.2
Oliver, M.J.3
-
75
-
-
0033949716
-
The specialized chalazal endosperm in Arabidopsis thaliana and Lepidium virginicum (Brassicaceae)
-
Nguyen H, Brown RC, Lemmon B, (2000) The specialized chalazal endosperm in Arabidopsis thaliana and Lepidium virginicum (Brassicaceae). Protoplasma 212: 99-110.
-
(2000)
Protoplasma
, vol.212
, pp. 99-110
-
-
Nguyen, H.1
Brown, R.C.2
Lemmon, B.3
-
76
-
-
78649505781
-
Family life at close quarters: communication and constraint in angiosperm seed development
-
Ingram GC, (2010) Family life at close quarters: communication and constraint in angiosperm seed development. Protoplasma 247: 195-214.
-
(2010)
Protoplasma
, vol.247
, pp. 195-214
-
-
Ingram, G.C.1
-
77
-
-
0346505476
-
Expression of cytokinin biosynthetic isopentenyltransferase genes in Arabidopsis: tissue specificity and regulation by auxin, cytokinin, and nitrate
-
Miyawaki K, Matsumoto-Kitano M, Kakimoto T, (2004) Expression of cytokinin biosynthetic isopentenyltransferase genes in Arabidopsis: tissue specificity and regulation by auxin, cytokinin, and nitrate. Plant J 37: 128-138.
-
(2004)
Plant J
, vol.37
, pp. 128-138
-
-
Miyawaki, K.1
Matsumoto-Kitano, M.2
Kakimoto, T.3
-
78
-
-
33745957013
-
Cytokinins: Activity, biosynthesis and translocation
-
Sakakibara H, (2006) Cytokinins: Activity, biosynthesis and translocation. Annu Rev Plant Biol 57: 431-449.
-
(2006)
Annu Rev Plant Biol
, vol.57
, pp. 431-449
-
-
Sakakibara, H.1
-
79
-
-
34447117580
-
Arabidopsis thaliana squalene epoxidase 1 is essential for root and seed development
-
Rasbery JM, Shan H, LeClair RJ, Norman M, Matsuda SPT, et al. (2007) Arabidopsis thaliana squalene epoxidase 1 is essential for root and seed development. J Biol Chem 282: 17002-17013.
-
(2007)
J Biol Chem
, vol.282
, pp. 17002-17013
-
-
Rasbery, J.M.1
Shan, H.2
LeClair, R.J.3
Norman, M.4
Matsuda, S.P.T.5
|