메뉴 건너뛰기




Volumn 7, Issue 11, 2012, Pages

Clinical Value of Prognosis Gene Expression Signatures in Colorectal Cancer: A Systematic Review

Author keywords

[No Author keywords available]

Indexed keywords

AD09MSI GENE; AD09MSS GENE; AJ08 GENE; AR05 GENE; ARTICLE; BD07 GENE; BR05 GENE; BR06 GENE; BT04 GENE; CANCER CLASSIFICATION; CANCER PROGNOSIS; CANCER STAGING; CANCER TISSUE; CLASSIFIER; CLINICAL DATA REPOSITORY; CLINICAL EFFECTIVENESS; CLINICAL EVALUATION; COLORECTAL CANCER; DIAGNOSTIC ACCURACY; DRUG DISCRIMINATION; EC05 GENE; GENE; GENE EXPRESSION SIGNATURE; GENE EXPRESSION SYSTEM; GENE STRUCTURE; GENETIC ASSOCIATION; GENETIC CORRELATION; GENETIC DATABASE; HO09 GENE; HUMAN; INFORMATION PROCESSING; JG08 GENE; JS09 GENE; KL10 GENE; KN11 GENE; LC09 GENE; LN07G GENE; LN07NZ GENE; MICROSATELLITE INSTABILITY; MT10 GENE; NUCLEOTIDE SEQUENCE; OC10 GENE; PG10 GENE; PL10 GENE; PREDICTIVE VALUE; PREDICTOR VARIABLE; PROBABILITY; REPRODUCIBILITY; SC09 GENE; SENSITIVITY AND SPECIFICITY; SL10 GENE; SM09 GENE; ST09 GENE; SYSTEMATIC REVIEW; VALIDATION PROCESS; VL10 GENE; WG04 GENE; WN10 GENE; WT09 GENE; WT10 GENE; YM06 GENE;

EID: 84868674633     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0048877     Document Type: Article
Times cited : (76)

References (85)
  • 1
    • 76049128595 scopus 로고    scopus 로고
    • Estimates of cancer incidence and mortality in Europe in 2008
    • Ferlay J, Parkin DM, Steliarova-Foucher E, (2010) Estimates of cancer incidence and mortality in Europe in 2008. Eur J Cancer 46(4): 765-81.
    • (2010) Eur J Cancer , vol.46 , Issue.4 , pp. 765-781
    • Ferlay, J.1    Parkin, D.M.2    Steliarova-Foucher, E.3
  • 2
    • 0031051207 scopus 로고    scopus 로고
    • Adjuvant treatment of colorectal cancer
    • Saltz LB, Kelsen DP, (1997) Adjuvant treatment of colorectal cancer. Annu Rev Med 48: 191-202.
    • (1997) Annu Rev Med , vol.48 , pp. 191-202
    • Saltz, L.B.1    Kelsen, D.P.2
  • 3
    • 4344587783 scopus 로고    scopus 로고
    • American Society of Clinical Oncology recommendations on adjuvant chemotherapy for stage II colon cancer
    • Benson AB 3rd, Schrag D, Somerfield MR, Cohen AM, Figueredo AT, et al (2004) American Society of Clinical Oncology recommendations on adjuvant chemotherapy for stage II colon cancer. J Clin Oncol 22(16): 3408-19.
    • (2004) J Clin Oncol , vol.22 , Issue.16 , pp. 3408-3419
    • Benson 3rd, A.B.1    Schrag, D.2    Somerfield, M.R.3    Cohen, A.M.4    Figueredo, A.T.5
  • 4
    • 2542563257 scopus 로고    scopus 로고
    • Pooled analysis of fluorouracil-based adjuvant therapy for stage II and III colon cancer: who benefits and by how much?
    • Gill S, Loprinizi CL, Sargent DJ, Thome SD, Alberts SR, et al. (2004) Pooled analysis of fluorouracil-based adjuvant therapy for stage II and III colon cancer: who benefits and by how much?. J Clin Oncol 22(10): 1797-806.
    • (2004) J Clin Oncol , vol.22 , Issue.10 , pp. 1797-1806
    • Gill, S.1    Loprinizi, C.L.2    Sargent, D.J.3    Thome, S.D.4    Alberts, S.R.5
  • 5
    • 77957223568 scopus 로고    scopus 로고
    • A clinical risk score to predict 3-, 5- and 10-year survival in patients undergoing surgery for Dukes B colorectal cancer
    • McMillan DC, McArdle CS, Morrison DS, (2010) A clinical risk score to predict 3-, 5- and 10-year survival in patients undergoing surgery for Dukes B colorectal cancer. Br J Cancer. 103(7): 970-4.
    • (2010) Br J Cancer , vol.103 , Issue.7 , pp. 970-974
    • McMillan, D.C.1    McArdle, C.S.2    Morrison, D.S.3
  • 6
    • 79960987047 scopus 로고    scopus 로고
    • Challenges in the management of stage II colon cancer
    • Dotan E, Cohen SJ, (2011) Challenges in the management of stage II colon cancer. Semin Oncol 38(4): 511-20.
    • (2011) Semin Oncol , vol.38 , Issue.4 , pp. 511-520
    • Dotan, E.1    Cohen, S.J.2
  • 7
    • 0345008956 scopus 로고    scopus 로고
    • Molecular determinants of colon cancer metastasis
    • Portera CA Jr, Berman RS, Ellis LM, (1998) Molecular determinants of colon cancer metastasis. Surg Oncol 7(3-4): 183-95.
    • (1998) Surg Oncol , vol.7 , Issue.3-4 , pp. 183-195
    • Portera Jr., C.A.1    Berman, R.S.2    Ellis, L.M.3
  • 9
    • 79955900130 scopus 로고    scopus 로고
    • Predictive and prognostic markers in colorectal cancer
    • George B, Kopetz S, (2011) Predictive and prognostic markers in colorectal cancer. Curr Oncol Rep 13(3): 206-15.
    • (2011) Curr Oncol Rep , vol.13 , Issue.3 , pp. 206-215
    • George, B.1    Kopetz, S.2
  • 11
    • 77953565979 scopus 로고    scopus 로고
    • Gene-expression-based prognostic assays for breast cancer
    • Kim C, Paik S, (2010) Gene-expression-based prognostic assays for breast cancer. Nat Rev Clin Oncol 7(6): 340-7.
    • (2010) Nat Rev Clin Oncol , vol.7 , Issue.6 , pp. 340-347
    • Kim, C.1    Paik, S.2
  • 12
    • 67650410053 scopus 로고    scopus 로고
    • MammaPrint 70-gene signature: another milestone in personalized medical care for breast cancer patients
    • Slodkowska EA, Ross JS, (2009) MammaPrint 70-gene signature: another milestone in personalized medical care for breast cancer patients. Expert Rev Mol Diagn 9(5): 417-22.
    • (2009) Expert Rev Mol Diagn , vol.9 , Issue.5 , pp. 417-422
    • Slodkowska, E.A.1    Ross, J.S.2
  • 13
    • 68049122102 scopus 로고    scopus 로고
    • Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement
    • PRISMA Group
    • Moher D, Liberati A, Tetzlaff J, (2009) Altman DG; PRISMA Group (2009) Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement. PLoS Med 21 6(7): e1000097.
    • (2009) PLoS Med , vol.6 , Issue.7
    • Moher, D.1    Liberati, A.2    Tetzlaff, J.3    Altman, D.G.4
  • 14
    • 59649099698 scopus 로고    scopus 로고
    • Dysregulation of the transcription factors SOX4, CBFB and SMARCC1 correlates with outcome of colorectal cancer
    • Andersen CL, Christensen LL, Thorsen K, Schepeler T, Sorensen FB, et al. (2009) Dysregulation of the transcription factors SOX4, CBFB and SMARCC1 correlates with outcome of colorectal cancer. Br J Cancer 100(3): 511-23.
    • (2009) Br J Cancer , vol.100 , Issue.3 , pp. 511-523
    • Andersen, C.L.1    Christensen, L.L.2    Thorsen, K.3    Schepeler, T.4    Sorensen, F.B.5
  • 15
    • 51449101711 scopus 로고    scopus 로고
    • Reduced expression of a gene proliferation signature is associated with enhanced malignancy in colon cancer
    • Anjomshoaa A, Lin YH, Black MA, McCall JL, Humar B, et al. (2008) Reduced expression of a gene proliferation signature is associated with enhanced malignancy in colon cancer. Br J Cancer 99(6): 966-73.
    • (2008) Br J Cancer , vol.99 , Issue.6 , pp. 966-973
    • Anjomshoaa, A.1    Lin, Y.H.2    Black, M.A.3    McCall, J.L.4    Humar, B.5
  • 16
    • 24144469347 scopus 로고    scopus 로고
    • Gene-expression profiling predicts recurrence in Dukes' C colorectal cancer
    • Arango D, Laiho P, Kokko A, Alhopuro P, Sammalkorpi H, et al. (2005) Gene-expression profiling predicts recurrence in Dukes' C colorectal cancer. Gastroenterology 129(3): 874-84.
    • (2005) Gastroenterology , vol.129 , Issue.3 , pp. 874-884
    • Arango, D.1    Laiho, P.2    Kokko, A.3    Alhopuro, P.4    Sammalkorpi, H.5
  • 17
    • 34548557220 scopus 로고    scopus 로고
    • A gene signature of 8 genes could identify the risk of recurrence and progression in Dukes' B colon cancer patients
    • Bandres E, Malumbres R, Cubedo E, Honorato B, Zarate R, et al. (2007) A gene signature of 8 genes could identify the risk of recurrence and progression in Dukes' B colon cancer patients. Oncol Rep 17(5): 1089-94.
    • (2007) Oncol Rep , vol.17 , Issue.5 , pp. 1089-1094
    • Bandres, E.1    Malumbres, R.2    Cubedo, E.3    Honorato, B.4    Zarate, R.5
  • 18
    • 33750593381 scopus 로고    scopus 로고
    • Stage II colon cancer prognosis prediction by tumor gene expression profiling
    • Barrier A, Boelle PY, Roser F, Gregg J, Tse C, et al. (2006) Stage II colon cancer prognosis prediction by tumor gene expression profiling. J Clin Oncol 24(29): 4685-91.
    • (2006) J Clin Oncol , vol.24 , Issue.29 , pp. 4685-4691
    • Barrier, A.1    Boelle, P.Y.2    Roser, F.3    Gregg, J.4    Tse, C.5
  • 19
    • 26944483542 scopus 로고    scopus 로고
    • Colon cancer prognosis prediction by gene expression profiling
    • Barrier A, Lemoine A, Boelle PY, Tse C, Brault D, et al. (2005) Colon cancer prognosis prediction by gene expression profiling. Oncogene 24(40): 6155-64.
    • (2005) Oncogene , vol.24 , Issue.40 , pp. 6155-6164
    • Barrier, A.1    Lemoine, A.2    Boelle, P.Y.3    Tse, C.4    Brault, D.5
  • 20
    • 1442308342 scopus 로고    scopus 로고
    • Gene expression profiling of colon cancer by DNA microarrays and correlation with histoclinical parameters
    • Bertucci F, Salas S, Eysteries S, Nasser V, Finetti P, et al. (2004) Gene expression profiling of colon cancer by DNA microarrays and correlation with histoclinical parameters. Oncogene 23(7): 1377-91.
    • (2004) Oncogene , vol.23 , Issue.7 , pp. 1377-1391
    • Bertucci, F.1    Salas, S.2    Eysteries, S.3    Nasser, V.4    Finetti, P.5
  • 21
    • 20644443287 scopus 로고    scopus 로고
    • Molecular staging for survival prediction of colorectal cancer patients
    • Eschrich S, Yang I, Bloom G, Kwong KY, Boulware D, et al. (2005) Molecular staging for survival prediction of colorectal cancer patients. J Clin Oncol 23(15): 3526-35.
    • (2005) J Clin Oncol , vol.23 , Issue.15 , pp. 3526-3535
    • Eschrich, S.1    Yang, I.2    Bloom, G.3    Kwong, K.Y.4    Boulware, D.5
  • 22
    • 76749100269 scopus 로고    scopus 로고
    • Five-gene signature as a potential predictor of metastasis and survival in colorectal cancer
    • Hao JM, Chen JZ, Sui HM, Si-Ma XQ, Li GQ, et al. (2010) Five-gene signature as a potential predictor of metastasis and survival in colorectal cancer. J Pathol 220(4): 475-89.
    • (2010) J Pathol , vol.220 , Issue.4 , pp. 475-489
    • Hao, J.M.1    Chen, J.Z.2    Sui, H.M.3    Si-Ma, X.Q.4    Li, G.Q.5
  • 23
    • 47649088932 scopus 로고    scopus 로고
    • Development of a clinically feasible molecular assay to predict recurrence of stage II colon cancer
    • Jiang Y, Casey G, Lavery IC, Zhang Y, Talantov D, et al. (2008) Development of a clinically feasible molecular assay to predict recurrence of stage II colon cancer. J Mol Diagn 10(4): 346-54.
    • (2008) J Mol Diagn , vol.10 , Issue.4 , pp. 346-354
    • Jiang, Y.1    Casey, G.2    Lavery, I.C.3    Zhang, Y.4    Talantov, D.5
  • 24
    • 73349088103 scopus 로고    scopus 로고
    • Metastasis-Associated Gene Expression Changes Predict Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer
    • Jorissen RN, Gibbs P, Christie M, Prakash S, Lipton L, et al. (2009) Metastasis-Associated Gene Expression Changes Predict Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer. Clin Cancer Res 15(24): 7642-7651.
    • (2009) Clin Cancer Res , vol.15 , Issue.24 , pp. 7642-7651
    • Jorissen, R.N.1    Gibbs, P.2    Christie, M.3    Prakash, S.4    Lipton, L.5
  • 25
    • 77955559492 scopus 로고    scopus 로고
    • Gene signature is associated with early stage rectal cancer recurrence
    • Kalady MF, Dejulius K, Church JM, Lavery IC, Fazio VW, (2010) Gene signature is associated with early stage rectal cancer recurrence. J Am Coll Surg 211(2): 187-95.
    • (2010) J Am Coll Surg , vol.211 , Issue.2 , pp. 187-195
    • Kalady, M.F.1    Dejulius, K.2    Church, J.M.3    Lavery, I.C.4    Fazio, V.W.5
  • 26
    • 83355174077 scopus 로고    scopus 로고
    • Development and Independent Validation of a Prognostic Assay for Stage II Colon Cancer Using Formalin-Fixed Paraffin-Embedded Tissue
    • Kennedy RD, Bylesjo M, Kerr P, Davison T, Black JM, et al. (2011) Development and Independent Validation of a Prognostic Assay for Stage II Colon Cancer Using Formalin-Fixed Paraffin-Embedded Tissue. J Clin Oncol 29(35): 4620-6.
    • (2011) J Clin Oncol , vol.29 , Issue.35 , pp. 4620-4626
    • Kennedy, R.D.1    Bylesjo, M.2    Kerr, P.3    Davison, T.4    Black, J.M.5
  • 27
    • 64549147055 scopus 로고    scopus 로고
    • Preoperative chemoradiotherapy in locally advanced rectal cancer: correlation of a gene expression-based response signature with recurrence
    • Liersch T, Grade M, Gaedcke J, Varma S, Difilippantonio MJ, et al. (2009) Preoperative chemoradiotherapy in locally advanced rectal cancer: correlation of a gene expression-based response signature with recurrence. Cancer Genet Cytogenet. 190(2): 57-65.
    • (2009) Cancer Genet Cytogenet , vol.190 , Issue.2 , pp. 57-65
    • Liersch, T.1    Grade, M.2    Gaedcke, J.3    Varma, S.4    Difilippantonio, M.J.5
  • 28
    • 33846889777 scopus 로고    scopus 로고
    • Multiple gene expression classifiers from different array platforms predict poor prognosis of colorectal cancer
    • Lin YH, Friederichs J, Black MA, Mages J, Rosenberg R, et al. (2007) Multiple gene expression classifiers from different array platforms predict poor prognosis of colorectal cancer. Clin Cancer Res 13(2 Pt 1): 498-507.
    • (2007) Clin Cancer Res , vol.13 , Issue.2 Pt 1 , pp. 498-507
    • Lin, Y.H.1    Friederichs, J.2    Black, M.A.3    Mages, J.4    Rosenberg, R.5
  • 29
    • 78650848876 scopus 로고    scopus 로고
    • A 12-gene genomic instability signature predicts clinical outcomes in multiple cancer types
    • Mettu RK, Wan YW, Habermann JK, Ried T, Guo NL, (2010) A 12-gene genomic instability signature predicts clinical outcomes in multiple cancer types. Int J Biol Markers 25(4): 219-28.
    • (2010) Int J Biol Markers , vol.25 , Issue.4 , pp. 219-228
    • Mettu, R.K.1    Wan, Y.W.2    Habermann, J.K.3    Ried, T.4    Guo, N.L.5
  • 30
    • 77957582401 scopus 로고    scopus 로고
    • Relationship between tumor gene expression and recurrence in four independent studies of patients with stage II/III colon cancer treated with surgery alone or surgery plus adjuvant fluorouracil plus leucovorin
    • O'Connell MJ, Lavery I, Yothers G, Paik S, Clark-Langone KM, et al. (2010) Relationship between tumor gene expression and recurrence in four independent studies of patients with stage II/III colon cancer treated with surgery alone or surgery plus adjuvant fluorouracil plus leucovorin. J Clin Oncol 28(25): 3937-44.
    • (2010) J Clin Oncol , vol.28 , Issue.25 , pp. 3937-3944
    • O'Connell, M.J.1    Lavery, I.2    Yothers, G.3    Paik, S.4    Clark-Langone, K.M.5
  • 31
    • 78149408714 scopus 로고    scopus 로고
    • Integration of genetic signature and TNM staging system for predicting the relapse of locally advanced colorectal cancer
    • Peng J, Wang Z, Chen W, Ding Y, Wang H, et al. (2010) Integration of genetic signature and TNM staging system for predicting the relapse of locally advanced colorectal cancer. Int J Colorectal Dis 25(11): 1277-85.
    • (2010) Int J Colorectal Dis , vol.25 , Issue.11 , pp. 1277-1285
    • Peng, J.1    Wang, Z.2    Chen, W.3    Ding, Y.4    Wang, H.5
  • 32
    • 76849112149 scopus 로고    scopus 로고
    • A 'DNA replication' signature of progression and negative outcome in colorectal cancer
    • Pillaire MJ, Selves J, Gordien K, Gourraud PA, Gentil C, et al. (2010) A 'DNA replication' signature of progression and negative outcome in colorectal cancer. Oncogene 29(6): 876-87.
    • (2010) Oncogene , vol.29 , Issue.6 , pp. 876-887
    • Pillaire, M.J.1    Selves, J.2    Gordien, K.3    Gourraud, P.A.4    Gentil, C.5
  • 33
    • 79951506562 scopus 로고    scopus 로고
    • Gene expression signature to improve prognosis prediction of stage II and III colorectal cancer
    • Salazar R, Roepman P, Capella G, Moreno V, Simon I, et al. (2011) Gene expression signature to improve prognosis prediction of stage II and III colorectal cancer. J Clin Oncol 29(1): 17-24.
    • (2011) J Clin Oncol , vol.29 , Issue.1 , pp. 17-24
    • Salazar, R.1    Roepman, P.2    Capella, G.3    Moreno, V.4    Simon, I.5
  • 34
    • 70349454207 scopus 로고    scopus 로고
    • Association of inflammation-related and microRNA gene expression with cancer-specific mortality of colon adenocarcinoma
    • Schetter AJ, Nguyen GH, Bowman ED, Mathe EA, Yuen ST, et al. (2009) Association of inflammation-related and microRNA gene expression with cancer-specific mortality of colon adenocarcinoma. Clin Cancer Res15(18): 5878-87.
    • (2009) Clin Cancer Res , vol.15 , Issue.18 , pp. 5878-5887
    • Schetter, A.J.1    Nguyen, G.H.2    Bowman, E.D.3    Mathe, E.A.4    Yuen, S.T.5
  • 35
    • 77249143960 scopus 로고    scopus 로고
    • Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer
    • Smith JJ, Deane NG, Wu F, Merchant NB, Zhang B, et al. (2010) Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer. Gastroenterology 138(3): 958-68.
    • (2010) Gastroenterology , vol.138 , Issue.3 , pp. 958-968
    • Smith, J.J.1    Deane, N.G.2    Wu, F.3    Merchant, N.B.4    Zhang, B.5
  • 36
    • 67349182473 scopus 로고    scopus 로고
    • An expression module of WIPF1-coexpressed genes identifies patients with favorable prognosis in three tumor types
    • Staub E, Groene J, Heinze M, Mennerich D, Roepcke S, et al. (2009) An expression module of WIPF1-coexpressed genes identifies patients with favorable prognosis in three tumor types. J Mol Med (Berl) 87(6): 633-44.
    • (2009) J Mol Med (Berl) , vol.87 , Issue.6 , pp. 633-644
    • Staub, E.1    Groene, J.2    Heinze, M.3    Mennerich, D.4    Roepcke, S.5
  • 37
    • 78650025420 scopus 로고    scopus 로고
    • An online gene expression assay for determining adjuvant therapy eligibility in patients with stage 2 or 3 colon cancer
    • Van Laar RK, (2010) An online gene expression assay for determining adjuvant therapy eligibility in patients with stage 2 or 3 colon cancer. Br J Cancer 103(12): 1852-7.
    • (2010) Br J Cancer , vol.103 , Issue.12 , pp. 1852-1857
    • Van Laar, R.K.1
  • 38
    • 77954355878 scopus 로고    scopus 로고
    • A breast cancer prognostic signature predicts clinical outcomes in multiple tumor types
    • Wan YW, Quian Y, Rathanagiriswaran S, Castranova V, Guo NL, (2010) A breast cancer prognostic signature predicts clinical outcomes in multiple tumor types. Oncol Rep 24(2): 489-94.
    • (2010) Oncol Rep , vol.24 , Issue.2 , pp. 489-494
    • Wan, Y.W.1    Quian, Y.2    Rathanagiriswaran, S.3    Castranova, V.4    Guo, N.L.5
  • 39
    • 2442684455 scopus 로고    scopus 로고
    • Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer
    • Wang Y, Jatkoe T, Zhang Y, Mutch MG, Talantov D, et al. (2004) Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer. J Clin Oncol 22(9): 1564-71.
    • (2004) J Clin Oncol , vol.22 , Issue.9 , pp. 1564-1571
    • Wang, Y.1    Jatkoe, T.2    Zhang, Y.3    Mutch, M.G.4    Talantov, D.5
  • 40
    • 59449083459 scopus 로고    scopus 로고
    • Gene expression signature for recurrence in stage III colorectal cancers
    • Watanabe T, Kobunai T, Sakamoto E, Yamamoto Y, Konishi T, et al. (2009) Gene expression signature for recurrence in stage III colorectal cancers. Cancer 115(2): 283-92.
    • (2009) Cancer , vol.115 , Issue.2 , pp. 283-292
    • Watanabe, T.1    Kobunai, T.2    Sakamoto, E.3    Yamamoto, Y.4    Konishi, T.5
  • 41
    • 77954217237 scopus 로고    scopus 로고
    • Prediction of liver metastasis after colorectal cancer using reverse transcription-polymerase chain reaction analysis of 10 genes
    • Watanabe T, Kobunai T, Yamamoto Y, Kanazawa T, Konishi T, et al. (2010) Prediction of liver metastasis after colorectal cancer using reverse transcription-polymerase chain reaction analysis of 10 genes. Eur J Cancer. 46(11): 2119-26.
    • (2010) Eur J Cancer , vol.46 , Issue.11 , pp. 2119-2126
    • Watanabe, T.1    Kobunai, T.2    Yamamoto, Y.3    Kanazawa, T.4    Konishi, T.5
  • 42
    • 34250853675 scopus 로고    scopus 로고
    • The gene expression profile represents the molecular nature of liver metastasis in colorectal cancer
    • Yamasaki M, Takemasa I, Komori T, Watanabe S, Sekimoto M, et al. (2007) The gene expression profile represents the molecular nature of liver metastasis in colorectal cancer. Int J Oncol 30(1): 129-38.
    • (2007) Int J Oncol , vol.30 , Issue.1 , pp. 129-138
    • Yamasaki, M.1    Takemasa, I.2    Komori, T.3    Watanabe, S.4    Sekimoto, M.5
  • 43
    • 83355166957 scopus 로고    scopus 로고
    • Validation study of a quantitative multigene reverse transcriptase-polymerase chain reaction assay for assessment of recurrence risk in patients with stage II colon cancer
    • Gray RG, Quirke P, Handley K, Lopatin M, Magill L, et al. (2011) Validation study of a quantitative multigene reverse transcriptase-polymerase chain reaction assay for assessment of recurrence risk in patients with stage II colon cancer. J Clin Oncol 10 29(35): 4611-9.
    • (2011) J Clin Oncol , vol.29 , Issue.35 , pp. 4611-4619
    • Gray, R.G.1    Quirke, P.2    Handley, K.3    Lopatin, M.4    Magill, L.5
  • 44
    • 33747884345 scopus 로고    scopus 로고
    • Gene expression omnibus: microarray data storage, submission, retrieval, and analysis
    • Barrett T, Edgar R, (2006) Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol 411: 352-69.
    • (2006) Methods Enzymol , vol.411 , pp. 352-369
    • Barrett, T.1    Edgar, R.2
  • 45
    • 13444249955 scopus 로고    scopus 로고
    • ArrayExpress-a public repository for microarray gene expression data at the EBI
    • Parkinson H, Sarkans U, Shojatalab M, Abeygunawardena N, Contrino S, et al. (2005) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 33(Database issue): D553-5.
    • (2005) Nucleic Acids Res , vol.33 , Issue.Database issue , pp. 553-555
    • Parkinson, H.1    Sarkans, U.2    Shojatalab, M.3    Abeygunawardena, N.4    Contrino, S.5
  • 46
    • 78651319979 scopus 로고    scopus 로고
    • Ongoing and future developments at the Universal Protein Resource
    • UniProt Consortium
    • UniProt Consortium (2011) Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res 39(Database issue): D214-9.
    • (2011) Nucleic Acids Res , vol.39 , Issue.Database issue , pp. 214-219
  • 47
  • 49
    • 0035478854 scopus 로고    scopus 로고
    • Random Forest
    • Breiman L, (2001) Random Forest. Machine Learning 45(1): 5-32.
    • (2001) Machine Learning , vol.45 , Issue.1 , pp. 5-32
    • Breiman, L.1
  • 51
    • 84872386141 scopus 로고    scopus 로고
    • Bias of the Random Forest Out-of-Bag (OOB) Error for Certain Input Parameters
    • doi:10.4236/ojs.2011.13024
    • Mitchell MW (2011) Bias of the Random Forest Out-of-Bag (OOB) Error for Certain Input Parameters. Open Journal of Statistics doi:10.4236/ojs.2011.13024.
    • (2011) Open Journal of Statistics
    • Mitchell, M.W.1
  • 52
    • 0345040873 scopus 로고    scopus 로고
    • Classification and regression by randomForest
    • Liaw A, Wiene M, (2002) Classification and regression by randomForest. R News 2(3): 18-22.
    • (2002) R News , vol.2 , Issue.3 , pp. 18-22
    • Liaw, A.1    Wiene, M.2
  • 55
    • 64049108468 scopus 로고    scopus 로고
    • Exploratory undersampling for class-imbalance learning
    • Liu XY, Wu J, Zhou ZH, (2009) Exploratory undersampling for class-imbalance learning. IEEE Trans Syst Man Cybern B Cybern 39(2): 539-50.
    • (2009) IEEE Trans Syst Man Cybern B Cybern , vol.39 , Issue.2 , pp. 539-550
    • Liu, X.Y.1    Wu, J.2    Zhou, Z.H.3
  • 56
    • 84878816676 scopus 로고    scopus 로고
    • R package version 0.93. Available
    • Hastie T (2009) svmpath: the SVM Path algorithm. R package version 0.93. Available: http://CRAN.R-project.org/package=svmpath.
    • (2009) Svmpath: The SVM Path algorithm
    • Hastie, T.1
  • 57
    • 0033931867 scopus 로고    scopus 로고
    • Assessing the accuracy of prediction algorithms for classification: an overview
    • Baldi P, Brunak S, Chauvin Y, Andersen CA, Nielsen H, (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 16(5): 412-24.
    • (2000) Bioinformatics , vol.16 , Issue.5 , pp. 412-424
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Andersen, C.A.4    Nielsen, H.5
  • 58
    • 78650735473 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
    • Shi L, Campbell G, Jones WD, Campagne F, Wen Z, et al. (2010) The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol 28(8): 827-38.
    • (2010) Nat Biotechnol , vol.28 , Issue.8 , pp. 827-838
    • Shi, L.1    Campbell, G.2    Jones, W.D.3    Campagne, F.4    Wen, Z.5
  • 60
    • 1342330535 scopus 로고    scopus 로고
    • Is cross-validation valid for small-sample microarray classification?
    • Braga-Neto UM, Dougherty ER, (2004) Is cross-validation valid for small-sample microarray classification? Bioinformatics 12 20(3): 374-80.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 374-380
    • Braga-Neto, U.M.1    Dougherty, E.R.2
  • 65
    • 33847116111 scopus 로고    scopus 로고
    • Appropriateness of some resampling-based inference procedures for assessing performance of prognostic classifiers derived from microarray data
    • Lusa L, McShane LM, Radmacher MD, Shih JH, Wright GW, et al. (2007) Appropriateness of some resampling-based inference procedures for assessing performance of prognostic classifiers derived from microarray data. Stat Med 28 26(5): 1102-13.
    • (2007) Stat Med , vol.26 , Issue.5 , pp. 1102-1113
    • Lusa, L.1    McShane, L.M.2    Radmacher, M.D.3    Shih, J.H.4    Wright, G.W.5
  • 66
    • 36849064682 scopus 로고    scopus 로고
    • Adjuvant chemotherapy versus observation in patients with colorectal cancer: a randomised study
    • Gray R, Barnwell J, McConkey C, Hills RK, Williams NS, et al. (2007) Adjuvant chemotherapy versus observation in patients with colorectal cancer: a randomised study. Lancet 370(9604): 2020-9.
    • (2007) Lancet , vol.370 , Issue.9604 , pp. 2020-2029
    • Gray, R.1    Barnwell, J.2    McConkey, C.3    Hills, R.K.4    Williams, N.S.5
  • 67
    • 70350148373 scopus 로고    scopus 로고
    • Gene expression profiles as predictors of poor outcomes in stage II colorectal cancer: A systematic review and meta-analysis
    • Lu AT, Salpeter SR, Reeve AE, Escrich S, Johnston PG, et al. (2009) Gene expression profiles as predictors of poor outcomes in stage II colorectal cancer: A systematic review and meta-analysis. Clin Colorectal Cancer 8(4): 207-14.
    • (2009) Clin Colorectal Cancer , vol.8 , Issue.4 , pp. 207-214
    • Lu, A.T.1    Salpeter, S.R.2    Reeve, A.E.3    Escrich, S.4    Johnston, P.G.5
  • 68
    • 33644688970 scopus 로고    scopus 로고
    • Roadmap for developing and validating therapeutically relevant genomic classifiers
    • Simon R, (2005) Roadmap for developing and validating therapeutically relevant genomic classifiers. J Clin Oncol 10 23(29): 7332-41.
    • (2005) J Clin Oncol , vol.23 , Issue.29 , pp. 7332-7341
    • Simon, R.1
  • 69
    • 33846978784 scopus 로고    scopus 로고
    • Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
    • Dupuy A, Simon RM, (2007) Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 17 99(2): 147-57.
    • (2007) J Natl Cancer Inst , vol.99 , Issue.2 , pp. 147-157
    • Dupuy, A.1    Simon, R.M.2
  • 70
    • 84861182680 scopus 로고    scopus 로고
    • Gene expression profiling to dissect the complexity of cancer biology: Pitfalls and promise
    • Mar 7
    • Raspe E, Decraene C, Berx G (2012) Gene expression profiling to dissect the complexity of cancer biology: Pitfalls and promise. Semin Cancer Biol. Mar 7.
    • (2012) Semin Cancer Biol
    • Raspe, E.1    Decraene, C.2    Berx, G.3
  • 71
    • 59149088407 scopus 로고    scopus 로고
    • Repeatability of published microarray gene expression analyses
    • Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, et al. (2009) Repeatability of published microarray gene expression analyses. Nat Genet. 2009 41(2): 149-55.
    • (2009) Nat Genet , vol.41 , Issue.2 , pp. 149-155
    • Ioannidis, J.P.1    Allison, D.B.2    Ball, C.A.3    Coulibaly, I.4    Cui, X.5
  • 72
    • 33644834827 scopus 로고    scopus 로고
    • Disease-free survival versus overall survival as a primary end point for adjuvant colon cancer studies: individual patient data from 20,898 patients on 18 randomized trials
    • Sargent DJ, Wieand HS, Haller DG, Gray R, Benedetti JK, et al. (2005) Disease-free survival versus overall survival as a primary end point for adjuvant colon cancer studies: individual patient data from 20,898 patients on 18 randomized trials. J Clin Oncol 1 23(34): 8664-70.
    • (2005) J Clin Oncol , vol.23 , Issue.34 , pp. 8664-8670
    • Sargent, D.J.1    Wieand, H.S.2    Haller, D.G.3    Gray, R.4    Benedetti, J.K.5
  • 73
    • 35648964774 scopus 로고    scopus 로고
    • End points for colon cancer adjuvant trials: observations and recommendations based on individual patient data from 20,898 patients enrolled onto 18 randomized trials from the ACCENT Group
    • Sargent DJ, Patiyil S, Yothers G, Haller DG, Gray R, et al. (2007) End points for colon cancer adjuvant trials: observations and recommendations based on individual patient data from 20,898 patients enrolled onto 18 randomized trials from the ACCENT Group. J Clin Oncol 10 25(29): 4569-74.
    • (2007) J Clin Oncol , vol.25 , Issue.29 , pp. 4569-4574
    • Sargent, D.J.1    Patiyil, S.2    Yothers, G.3    Haller, D.G.4    Gray, R.5
  • 74
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • Hanahan D, Weinberg RA, (2000) The hallmarks of cancer. Cell 7 100(1): 57-70.
    • (2000) Cell , vol.100 , Issue.1 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 75
    • 77952294121 scopus 로고    scopus 로고
    • Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome
    • Barry WT, Kernagis DN, Dressman HK, Griffis RJ, Hunter JD, et al. (2010) Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome. J Clin Oncol 1 28(13): 2198-206.
    • (2010) J Clin Oncol , vol.28 , Issue.13 , pp. 2198-2206
    • Barry, W.T.1    Kernagis, D.N.2    Dressman, H.K.3    Griffis, R.J.4    Hunter, J.D.5
  • 76
    • 84934436484 scopus 로고    scopus 로고
    • Complementary techniques: laser capture microdissection-increasing specificity of gene expression profiling of cancer specimens
    • Esposito G, (2007) Complementary techniques: laser capture microdissection-increasing specificity of gene expression profiling of cancer specimens. Adv Exp Med Biol 593: 54-65.
    • (2007) Adv Exp Med Biol , vol.593 , pp. 54-65
    • Esposito, G.1
  • 77
    • 33845336842 scopus 로고    scopus 로고
    • Expression and genomic profiling of colorectal cancer
    • Cardoso J, Boer J, Morreau H, Fodde R, (2007) Expression and genomic profiling of colorectal cancer. Biochim Biophys Acta 1775(1): 103-37.
    • (2007) Biochim Biophys Acta , vol.1775 , Issue.1 , pp. 103-137
    • Cardoso, J.1    Boer, J.2    Morreau, H.3    Fodde, R.4
  • 78
    • 78650555583 scopus 로고    scopus 로고
    • Breast cancer biomarker discovery in the functional genomic age: a systematic review of 42 gene expression signatures
    • Abba MC, Lacunza E, Butti M, Aldaz CM, (2010) Breast cancer biomarker discovery in the functional genomic age: a systematic review of 42 gene expression signatures. Biomark Insights 27 5: 103-18.
    • (2010) Biomark Insights , vol.5 , pp. 103-118
    • Abba, M.C.1    Lacunza, E.2    Butti, M.3    Aldaz, C.M.4
  • 79
    • 79955562970 scopus 로고    scopus 로고
    • Consensus pathways implicated in prognosis of colorectal cancer identified through systematic enrichment analysis of gene expression profiling studies
    • Lascorz J, Chen B, Hemminki K, Forsti A, (2011) Consensus pathways implicated in prognosis of colorectal cancer identified through systematic enrichment analysis of gene expression profiling studies. PLoS One 6(4): e18867.
    • (2011) PLoS One , vol.6 , Issue.4
    • Lascorz, J.1    Chen, B.2    Hemminki, K.3    Forsti, A.4
  • 82
    • 77951906327 scopus 로고    scopus 로고
    • Factors influencing local failure in rectal cancer: analysis of 2315 patients from a population-based series
    • Syk E, Glimelius B, Nilsson PJ, (2010) Factors influencing local failure in rectal cancer: analysis of 2315 patients from a population-based series. Dis Colon Rectum 53(5): 744-52.
    • (2010) Dis Colon Rectum , vol.53 , Issue.5 , pp. 744-752
    • Syk, E.1    Glimelius, B.2    Nilsson, P.J.3
  • 83
    • 30644464444 scopus 로고    scopus 로고
    • Gene selection and classification of microarray data using random forest
    • Diaz-Uriarte R, Alvarez de Andres S, (2006) Gene selection and classification of microarray data using random forest. BMC Bioinformatics 7: 3.
    • (2006) BMC Bioinformatics , vol.7 , pp. 3
    • Diaz-Uriarte, R.1    Alvarez de Andres, S.2
  • 84
    • 0036489046 scopus 로고    scopus 로고
    • Comparison of discrimination methods for classification of tumors using gene expression data
    • Dudoit S, Fridlyand J, Speed TP, (2002) Comparison of discrimination methods for classification of tumors using gene expression data. J Am Stat Assoc 97: 77-87.
    • (2002) J Am Stat Assoc , vol.97 , pp. 77-87
    • Dudoit, S.1    Fridlyand, J.2    Speed, T.P.3
  • 85
    • 80052725362 scopus 로고    scopus 로고
    • Oncotype DX tumor gene expression profiling in stage II colon cancer. Application: prognostic, risk prediction
    • Webber EM, Lin JS, Evelyn P Whitlock (2010) Oncotype DX tumor gene expression profiling in stage II colon cancer. Application: prognostic, risk prediction. PLoS Curr 2;2.
    • (2010) PLoS Curr , vol.2 , pp. 2
    • Webber, E.M.1    Lin, J.S.2    Evelyn, P.3    Whitlock4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.