Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription

Journal of Bacteriology

Volumn 194, Issue 21, 2012, Pages 5783-5793

  Rajeev, Lara ^a,b   Hillesland, Kristina L ^a,c   Zane, Grant M ^d   Zhou, Aifen ^e   Joachimiak, Marcin P ^b   He, Zhili ^e   Zhou, Jizhong ^e   Arkin, Adam P ^b   Wall, Judy D ^d   Stahl, David A ^a  

^a University of Washington   (United States)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF WASHINGTON BOTHELL   (United States)

^d University of Missouri   (United States)

^e UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON MONOXIDE; CARBON MONOXIDE DEHYDROGENASE; LACTIC ACID; PYRUVIC ACID; SULFATE; TRANSCRIPTION FACTOR; TRANSCRIPTIONAL FACTOR COOA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL METABOLISM; CONTROLLED STUDY; DESULFOVIBRIO VULGARIS; GENE DELETION; GENETIC TRANSCRIPTION; NONHUMAN; OXIDATION; PRIORITY JOURNAL; PROTEIN EXPRESSION; SENSOR;

ALDEHYDE OXIDOREDUCTASES; BACTERIAL PROTEINS; CARBON MONOXIDE; DESULFOVIBRIO VULGARIS; GENE DELETION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; LACTATES; MULTIENZYME COMPLEXES; PYRUVIC ACID; SULFATES; TRANSCRIPTION FACTORS;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO VULGARIS;

EID: 84868624316     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00749-12     Document Type: Article

References (34)

1. Bender KS, et al. 2007. Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough. Appl. Environ. Microbiol. 73: 5389-5400.
2. Berlier Y, et al. 1987. Inhibition studies of three classes of Desulfovibrio hydrogenase: application to the further characterization of the multiple hydrogenases found in Desulfovibrio vulgaris Hildenborough. Biochem. Biophys. Res. Commun. 146: 147-153.
3. Biegel E, Schmidt S, Gonzalez JM, Müller V. 2011. Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes. Cell. Mol. Life Sci. 68: 613-634.
4. Chhabra SR, et al. 2006. Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J. Bacteriol. 188: 1817-1828.
5. Cord-Ruwisch R. 1985. A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J. Microbiol. Methods 4: 33-36.
6. Davidge KS, et al. 2009. Carbon monoxide-releasing antibacterial molecules target respiration and global transcriptional regulators. J. Biol. Chem. 284: 4516-4524.
7. Davydova M, Sabirova R, Vylegzhanina N, Tarasova N. 2004. Carbon monoxide and oxidative stress in Desulfovibrio desulfuricans B-1388. J. Biochem. Mol. Toxicol. 18: 87-91.
8. Davydova MN, Tarasova NB. 2005. Carbon monoxide inhibits superoxide dismutase and stimulates reactive oxygen species production by Desulfovibrio desulfuricans 1388. Anaerobe 11: 335-338.
9. Fox JD, Kerby RL, Roberts GP, Ludden PW. 1996. Characterization of the CO-induced, CO-tolerant hydrogenase from Rhodospirillum rubrum and the gene encoding the large subunit of the enzyme. J. Bacteriol. 178: 1515-1524.
10. He Q, et al. 2006. Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. Appl. Environ. Microbiol. 72: 4370-4381.
11. He Y, Shelver D, Kerby RL, Roberts GP. 1996. Characterization of a CO-responsive transcriptional activator from Rhodospirillum rubrum. J. Biol. Chem. 271: 120-123.
12. Heidelberg JF, et al. 2004. The genome sequence of the anaerobic, sulfatereducing bacterium Desulfovibrio vulgaris Hildenborough. Nat. Biotechnol. 22: 554-559.
13. Heo J, Halbleib CM, Ludden PW. 2001. Redox-dependent activation of CO dehydrogenase from Rhodospirillum rubrum. Proc. Natl. Acad. Sci. U. S. A. 98: 7690-7693.
14. Kerby RL, et al. 1992. Genetic and physiological characterization of the Rhodospirillum rubrum carbon monoxide dehydrogenase system. J. Bacteriol. 174: 5284-5294.
15. Lupton FS, Conrad R, Zeikus JG. 1984. Physiological function of hydrogen metabolism during growth of sulfidogenic bacteria on organic substrates. J. Bacteriol. 159: 843-849.
16. Lupton FS, Conrad R, Zeikus JG. 1984. CO metabolism of Desulfovibrio vulgaris strain Madison: physiological function in the absence or presence of exogenous substrates. FEMS Microbiol. Lett. 23: 263-268.
17. Mukhopadhyay A, et al. 2006. Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J. Bacteriol. 188: 4068-4078.
18. Nobre LS, Al-Shahrour F, Dopazo J, Saraiva LM. 2009. Exploring the antimicrobial action of a carbon monoxide-releasing compound through whole genome transcription profiling of Escherichia coli. Microbiology 155: 813-824.
19. Noguera DR, Brusseau GA, Rittmann BE, Stahl DA. 1998. A unified model describing the role of hydrogen in the growth of Desulfovibrio vulgaris under different environmental conditions. Biotechnol. Bioeng. 59: 732-746.
20. Odom JP, Jr, et al. 1981. Hydrogen cycling as a general mechanism for energy coupling in the sulfate reducing bacteria, Desulfovibrio sp. FEMS Microbiol. Lett. 12: 47-50.
21. Parshina SN, et al. 2010. Carbon monoxide as an electron donor for the biological reduction of sulphate. Int. J. Microbiol. 2010: 319527.
22. Rabus R, Hansen T, Widdel F. 2006. Dissimilatory sulfate- and sulfur-reducing prokaryotes, p 659-768. In Dwarkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackbrandt E (ed), The prokaryotes. Springer, New York, NY.
23. Rodionov DA, Dubchak I, Arkin A, Alm E, Gelfand MS. 2004. Reconstruction of regulatory and metabolic pathways in metal-reducing deltaproteobacteria. Genome Biol. 5: R90.
24. Seufert K, et al. 2011. Cis-dicarbonyl binding at cobalt and iron porphyrins with saddle-shape conformation. Nat. Chem. 3: 114-119.
25. Shelver D, Kerby RL, He Y, Roberts GP. 1997. CooA, a CO-sensing transcription factor from Rhodospirillum rubrum, is a CO-binding heme protein. Proc. Natl. Acad. Sci. U. S. A. 94: 11216-11220.
26. Tavares AF, et al. 2011. Reactive oxygen species mediate bactericidal killing elicited by carbon monoxide-releasing molecules. J. Biol. Chem. 286: 26708-26717.
27. Thompson DK, et al. 2002. Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Appl. Environ. Microbiol. 68: 881-892.
28. Tsuji K, Yagi T. 1980. Significance of hydrogen burst from growing cultures of Desulfovibrio vulgaris Miyazaki, and the role of hydrogenase and cytochrome c in energy production system. Arch. Microbiol. 125: 35-42.
29. Voordouw G. 2002. Carbon monoxide cycling by Desulfovibrio vulgaris Hildenborough. J. Bacteriol. 184: 5903-5911.
30. Walker CB, et al. 2009. The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J. Bacteriol. 191: 5793-5801.
31. Wu M, et al. 2005. Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901. PLoS Genet. 1: e65. doi: 10.1371/journal.pgen.0010065.
32. Youn H, Kerby RL, Conrad M, Roberts GP. 2004. Functionally critical elements of CooA-related CO sensors. J. Bacteriol. 186: 1320-1329.
33. Zane GM, Yen HC, Wall JD. 2010. Effect of the deletion of qmoABC and the promoter distal gene encoding a hypothetical protein on sulfate reduction in Desulfovibrio vulgaris Hildenborough. Appl. Environ. Microbiol. 76: 5500-5509.
34. Zhou A, et al. 2010. Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough. Environ. Microbiol. 12: 2645-2657.