-
1
-
-
33750606219
-
Interferon action and the double-stranded RNA-dependent enzymes ADAR1 adenosine deaminase and PKR protein kinase
-
Toth, A. M., Zhang, P., Das, S., George, C. X., and Samuel, C. E. (2006) Interferon action and the double-stranded RNA-dependent enzymes ADAR1 adenosine deaminase and PKR protein kinase Prog. Nucleic Acid Res. Mol. Biol. 81, 369-434
-
(2006)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.81
, pp. 369-434
-
-
Toth, A.M.1
Zhang, P.2
Das, S.3
George, C.X.4
Samuel, C.E.5
-
2
-
-
33646805444
-
Inhibition of PKR by RNA and DNA viruses
-
Langland, J. O., Cameron, J. M., Heck, M. C., Jancovich, J. K., and Jacobs, B. L. (2006) Inhibition of PKR by RNA and DNA viruses Virus Res. 119, 100-110
-
(2006)
Virus Res.
, vol.119
, pp. 100-110
-
-
Langland, J.O.1
Cameron, J.M.2
Heck, M.C.3
Jancovich, J.K.4
Jacobs, B.L.5
-
3
-
-
10044246238
-
The double-stranded-RNA-binding motif: Interference and much more
-
Tian, B., Bevilacqua, P. C., Diegelman-Parente, A., and Mathews, M. B. (2004) The double-stranded-RNA-binding motif: Interference and much more Nat. Rev. Mol. Cell Biol. 5, 1013-1023
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 1013-1023
-
-
Tian, B.1
Bevilacqua, P.C.2
Diegelman-Parente, A.3
Mathews, M.B.4
-
4
-
-
0032530310
-
Structure of the double-stranded RNA binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation
-
Nanduri, S., Carpick, B. W., Yang, Y., Williams, B. R., and Qin, J. (1998) Structure of the double-stranded RNA binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation EMBO J. 17, 5458-5465
-
(1998)
EMBO J.
, vol.17
, pp. 5458-5465
-
-
Nanduri, S.1
Carpick, B.W.2
Yang, Y.3
Williams, B.R.4
Qin, J.5
-
5
-
-
0032535613
-
Molecular basis of double-stranded RNA-protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA
-
Ryter, J. M. and Schultz, S. C. (1998) Molecular basis of double-stranded RNA-protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA EMBO J. 17, 7505-7513
-
(1998)
EMBO J.
, vol.17
, pp. 7505-7513
-
-
Ryter, J.M.1
Schultz, S.C.2
-
6
-
-
25144502820
-
Higher-Order Substrate Recognition of eIF2α by the RNA-Dependent Protein Kinase PKR
-
Dar, A., Dever, T., and Sicheri, F. (2005) Higher-Order Substrate Recognition of eIF2α by the RNA-Dependent Protein Kinase PKR Cell 122, 887-900
-
(2005)
Cell
, vol.122
, pp. 887-900
-
-
Dar, A.1
Dever, T.2
Sicheri, F.3
-
7
-
-
79551687500
-
Regulation of innate immunity through RNA structure and the protein kinase PKR
-
Nallagatla, S. R., Toroney, R., and Bevilacqua, P. C. (2011) Regulation of innate immunity through RNA structure and the protein kinase PKR Curr. Opin. Struct. Biol. 21, 119-127
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 119-127
-
-
Nallagatla, S.R.1
Toroney, R.2
Bevilacqua, P.C.3
-
8
-
-
33846700754
-
Activation of PKR: An open and shut case?
-
Cole, J. L. (2007) Activation of PKR: An open and shut case? Trends Biochem. Sci. 32, 57-62
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 57-62
-
-
Cole, J.L.1
-
9
-
-
0030440591
-
The regulation of the protein kinase PKR by RNA
-
Robertson, H. D. and Mathews, M. B. (1996) The regulation of the protein kinase PKR by RNA Biochimie 78, 909-914
-
(1996)
Biochimie
, vol.78
, pp. 909-914
-
-
Robertson, H.D.1
Mathews, M.B.2
-
10
-
-
9644266744
-
Mechanism of PKR activation: Dimerization and kinase activation in the absence of double-stranded RNA
-
Lemaire, P. A., Lary, J., and Cole, J. L. (2005) Mechanism of PKR activation: Dimerization and kinase activation in the absence of double-stranded RNA J. Mol. Biol. 345, 81-90
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 81-90
-
-
Lemaire, P.A.1
Lary, J.2
Cole, J.L.3
-
11
-
-
25144477805
-
Mechanistic link between PKR dimerization, autophosphorylation, and eIF2α substrate recognition
-
Dey, M., Cao, C., Dar, A. C., Tamura, T., Ozato, K., Sicheri, F., and Dever, T. E. (2005) Mechanistic link between PKR dimerization, autophosphorylation, and eIF2α substrate recognition Cell 122, 901-913
-
(2005)
Cell
, vol.122
, pp. 901-913
-
-
Dey, M.1
Cao, C.2
Dar, A.C.3
Tamura, T.4
Ozato, K.5
Sicheri, F.6
Dever, T.E.7
-
12
-
-
0016669608
-
The characteristics of inhibition of protein synthesis by double-stranded ribonucleic acid in reticulocyte lysates
-
Hunter, T., Hunt, T., Jackson, R. J., and Robertson, H. D. (1975) The characteristics of inhibition of protein synthesis by double-stranded ribonucleic acid in reticulocyte lysates J. Biol. Chem. 250, 409-417
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 409-417
-
-
Hunter, T.1
Hunt, T.2
Jackson, R.J.3
Robertson, H.D.4
-
13
-
-
0026713151
-
Interactions between double-stranded RNA regulators and the protein kinase DAI
-
Manche, L., Green, S. R., Schmedt, C., and Mathews, M. B. (1992) Interactions between double-stranded RNA regulators and the protein kinase DAI Mol. Cell. Biol. 12, 5238-5248
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 5238-5248
-
-
Manche, L.1
Green, S.R.2
Schmedt, C.3
Mathews, M.B.4
-
14
-
-
0024549254
-
Purification and activation of the double-stranded RNA-dependent eIF-2 kinase DAI
-
Kostura, M. and Mathews, M. B. (1989) Purification and activation of the double-stranded RNA-dependent eIF-2 kinase DAI Mol. Cell. Biol. 9, 1576-1586
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 1576-1586
-
-
Kostura, M.1
Mathews, M.B.2
-
15
-
-
47049113097
-
Mechanism of PKR Activation by dsRNA
-
Lemaire, P. A., Anderson, E., Lary, J., and Cole, J. L. (2008) Mechanism of PKR Activation by dsRNA J. Mol. Biol. 381, 351-360
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 351-360
-
-
Lemaire, P.A.1
Anderson, E.2
Lary, J.3
Cole, J.L.4
-
16
-
-
0029782652
-
Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR
-
Bevilacqua, P. C. and Cech, T. R. (1996) Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR Biochemistry 35, 9983-9994
-
(1996)
Biochemistry
, vol.35
, pp. 9983-9994
-
-
Bevilacqua, P.C.1
Cech, T.R.2
-
17
-
-
33846077126
-
Mechanism of interaction of the double-stranded RNA (dsRNA) binding domain of protein kinase R with short dsRNA sequences
-
Ucci, J. W., Kobayashi, Y., Choi, G., Alexandrescu, A. T., and Cole, J. L. (2007) Mechanism of interaction of the double-stranded RNA (dsRNA) binding domain of protein kinase R with short dsRNA sequences Biochemistry 46, 55-65
-
(2007)
Biochemistry
, vol.46
, pp. 55-65
-
-
Ucci, J.W.1
Kobayashi, Y.2
Choi, G.3
Alexandrescu, A.T.4
Cole, J.L.5
-
18
-
-
0029078852
-
Functional characterization of the RNA-binding domain and motif of the double-stranded RNA-dependent protein kinase DAI (PKR)
-
Schmedt, C., Green, S. R., Manche, L., Taylor, D. R., Ma, Y., and Mathews, M. B. (1995) Functional characterization of the RNA-binding domain and motif of the double-stranded RNA-dependent protein kinase DAI (PKR) J. Mol. Biol. 249, 29-44
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 29-44
-
-
Schmedt, C.1
Green, S.R.2
Manche, L.3
Taylor, D.R.4
Ma, Y.5
Mathews, M.B.6
-
19
-
-
1642309516
-
Global analysis of non-specific protein-nucleic interactions by sedimentation equilibrium
-
Ucci, J. W. and Cole, J. L. (2004) Global analysis of non-specific protein-nucleic interactions by sedimentation equilibrium Biophys. Chem. 108, 127-140
-
(2004)
Biophys. Chem.
, vol.108
, pp. 127-140
-
-
Ucci, J.W.1
Cole, J.L.2
-
20
-
-
80855131662
-
Heparin Activates PKR by Inducing Dimerization
-
Anderson, E., Pierre-Louis, W. S., Wong, C. J., Lary, J. W., and Cole, J. L. (2011) Heparin Activates PKR by Inducing Dimerization J. Mol. Biol. 413, 973-984
-
(2011)
J. Mol. Biol.
, vol.413
, pp. 973-984
-
-
Anderson, E.1
Pierre-Louis, W.S.2
Wong, C.J.3
Lary, J.W.4
Cole, J.L.5
-
21
-
-
84861163705
-
Analysis of high-affinity assembly for AMPA receptor amino-terminal domains
-
Zhao, H., Berger, A. J., Brown, P. H., Kumar, J., Balbo, A., May, C. A., Casillas, E., Laue, T. M., Patterson, G. H., Mayer, M. L., and Schuck, P. (2012) Analysis of high-affinity assembly for AMPA receptor amino-terminal domains J. Gen. Physiol. 139, 371-388
-
(2012)
J. Gen. Physiol.
, vol.139
, pp. 371-388
-
-
Zhao, H.1
Berger, A.J.2
Brown, P.H.3
Kumar, J.4
Balbo, A.5
May, C.A.6
Casillas, E.7
Laue, T.M.8
Patterson, G.H.9
Mayer, M.L.10
Schuck, P.11
-
22
-
-
0002498995
-
Computer-aided interpretation of sedimentation data for proteins
-
Eds. In, pp, Royal Society of Chemistry, Cambridge, England
-
Harding, S. E., Rowe, A. J., and Horton, J. C., Eds. (1992) Computer-aided interpretation of sedimentation data for proteins. In Analytical Ultracentrifugation in Biochemistry and Polymer Science, pp 90-125, Royal Society of Chemistry, Cambridge, England.
-
(1992)
Analytical Ultracentrifugation in Biochemistry and Polymer Science
, pp. 90-125
-
-
Harding, S.E.1
Rowe, A.J.2
Horton, J.C.3
-
23
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
-
Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling Biophys. J. 78, 1606-1619
-
(2000)
Biophys. J.
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
24
-
-
78650944082
-
Analysis of PKR-RNA interactions by sedimentation velocity
-
Wong, C. J., Launer-Felty, K., and Cole, J. L. (2011) Analysis of PKR-RNA interactions by sedimentation velocity Methods Enzymol. 488, 59-79
-
(2011)
Methods Enzymol.
, vol.488
, pp. 59-79
-
-
Wong, C.J.1
Launer-Felty, K.2
Cole, J.L.3
-
25
-
-
0026747656
-
Boundary analysis in sedimentation transport experiments: A procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile
-
Stafford, W. F. (1992) Boundary analysis in sedimentation transport experiments: A procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile Anal. Biochem. 203, 295-301
-
(1992)
Anal. Biochem.
, vol.203
, pp. 295-301
-
-
Stafford, W.F.1
-
26
-
-
33745216899
-
Improved methods for fitting sedimentation coefficient distributions derived by time-derivative techniques
-
Philo, J. S. (2006) Improved methods for fitting sedimentation coefficient distributions derived by time-derivative techniques Anal. Biochem. 354, 238-246
-
(2006)
Anal. Biochem.
, vol.354
, pp. 238-246
-
-
Philo, J.S.1
-
27
-
-
1642368109
-
Analysis of heterologous interacting systems by sedimentation velocity: Curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants
-
Stafford, W. F. and Sherwood, P. J. (2004) Analysis of heterologous interacting systems by sedimentation velocity: Curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants Biophys. Chem. 108, 231-243
-
(2004)
Biophys. Chem.
, vol.108
, pp. 231-243
-
-
Stafford, W.F.1
Sherwood, P.J.2
-
28
-
-
1842481270
-
Analysis of heterogeneous interactions
-
Cole, J. L. (2004) Analysis of heterogeneous interactions Methods Enzymol. 384, 212-232
-
(2004)
Methods Enzymol.
, vol.384
, pp. 212-232
-
-
Cole, J.L.1
-
29
-
-
0018196563
-
Cooperative and non-cooperative binding of large ligands to a finite one-dimensional lattice: A model for ligand-oligonucleotide interactions
-
Epstein, I. R. (1978) Cooperative and non-cooperative binding of large ligands to a finite one-dimensional lattice: A model for ligand-oligonucleotide interactions Biophys. Chem. 8, 327-339
-
(1978)
Biophys. Chem.
, vol.8
, pp. 327-339
-
-
Epstein, I.R.1
-
30
-
-
0014144576
-
Protein-nucleic acid interactions. II. Oligopeptide-polyribonucleotide binding studies
-
Latt, S. A. and Sober, H. A. (1967) Protein-nucleic acid interactions. II. Oligopeptide-polyribonucleotide binding studies Biochemistry 6, 3293-3306
-
(1967)
Biochemistry
, vol.6
, pp. 3293-3306
-
-
Latt, S.A.1
Sober, H.A.2
-
31
-
-
0034696765
-
Consequences of the non-specific binding of a protein to a linear polymer: Reconciliation of stoichiometric and equilibrium titration data for the thrombin-heparin interaction
-
Munro, P. D., Jackson, C. M., and Winzor, D. J. (2000) Consequences of the non-specific binding of a protein to a linear polymer: Reconciliation of stoichiometric and equilibrium titration data for the thrombin-heparin interaction J. Theor. Biol. 203, 407-418
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 407-418
-
-
Munro, P.D.1
Jackson, C.M.2
Winzor, D.J.3
-
32
-
-
0037046161
-
Identification of binding sites for both dsRBMs of PKR on kinase-activating and kinase-inhibiting RNA ligands
-
Spanggord, R. J., Vuyisich, M., and Beal, P. A. (2002) Identification of binding sites for both dsRBMs of PKR on kinase-activating and kinase-inhibiting RNA ligands Biochemistry 41, 4511-4520
-
(2002)
Biochemistry
, vol.41
, pp. 4511-4520
-
-
Spanggord, R.J.1
Vuyisich, M.2
Beal, P.A.3
|