Microsatellite DNA analysis and hydrodynamic modelling reveal the extent of larval transport and gene flow between management zones in an exploited marine fish (glaucosoma hebraicum)

Fisheries Oceanography

Volumn 21, Issue 4, 2012, Pages 243-254

  Berry, Oliver ^a   England, Phillip ^a   Fairclough, David ^b   Jackson, Gary ^b   Greenwood, Jim ^a  

^a CSIRO   (Australia)

^b WESTERN AUSTRALIAN FISHERIES AND MARINE RESEARCH LABORATORIES   (Australia)

Author keywords

Fish; Fisheries; Larval dispersal; Microsatellite; Particle tracking; West Australian dhufish

Indexed keywords

ABUNDANCE; COMMERCIAL SPECIES; DISPERSAL; EXPLOITATION; FECUNDITY; FISHERY MANAGEMENT; GENE FLOW; GENETIC ANALYSIS; GENETIC MARKER; HYDRODYNAMICS; LARVAL TRANSPORT; PERCIFORM; POPULATION DYNAMICS; RECRUITMENT (POPULATION DYNAMICS); STOCK ASSESSMENT; TRACKING;

GLAUCOSOMA HEBRAICUM; PISCES;

EID: 84868557396     PISSN: 10546006     EISSN: 13652419     Source Type: Journal    
DOI: 10.1111/j.1365-2419.2012.00623.x     Document Type: Article

References (80)

1. Allendorf, F.W., England, P.R., Luikart, G., Ritchie, P.A. and Ryman, N. (2008) Genetic effects of harvest on wild animal populations. Trends Ecol. Evol. 23:327-337.
2. Antao, T., Lopes, A., Lopes, R.J., Beja-Pereira, A. and Luikart, G. (2008) LOSITAN: a workbench to detect molecular adaptation based on a Fst outlier method. BMC Bioinformatics 9:323-328.
3. Ayvazian, S.G., Bastow, T.P., Edmonds, J.S., How, J. and Nowara, G.B. (2004) Stock structure of Australian herring (Arripis georgiana) in southwestern Australia. Fish. Res. 67:39-53.
4. Ayvazian, S.G., Johnson, M.S. and McGlashan, D.J. (1994) High-levels of genetic subdivision of marine and estuarine populations of the estuarine catfish Cnidoglanis macrocephalus (plotosidae) in southwestern Australia. Mar. Biol. 118:25-31.
5. Baums, I.B., Paris, C.B. and Cherubin, L.M. (2006) A biooceanographic filter to larval dispersal in a reef-building coral. Limnol. Oceanogr. 51:1969-1981.
6. Beaumont, M.A. and Nichols, R.A. (1996) Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. B 263:1619-1626.
7. Beckley, L.E., Muhling, B.A. and Gaughan, D.J. (2009) Larval fishes off Western Australia: influence of the Leeuwin Current. J. R. Soc. West. Aust. 92:101-109.
8. Begg, G.A. and Waldman, J.R. (1999) An holistic approach to fish stock identification. Fish. Res. 43:35-44.
9. Bonnet, E. and Van de Peer, Y. (2002) zt: a software tool for simple and partial Mantel tests. J. Stat. Softw. 7:1-12.
10. Botsford, L.W., White, J.W., Coffroth, M.A. et al. (2009) Connectivity and resilience of coral reef metapopulations in marine protected areas: matching empirical efforts to predictive needs. Coral Reefs 28:327-337.
11. Bradbury, I.R. and Snelgrove, P.V.R. (2001) Contrasting larval transport in demersal fish and benthic invertebrates: the roles of behaviour and advective processes in determining spatial pattern. Can. J. Fish. Aquat. Sci. 58:811-823.
12. Burridge, C.P. and England, P.R. (2009) Tri- and tetranucleotide microsatellites in dhufish Glaucosoma hebraicum (Perciformes). Mol. Ecol. Resour. 9:948-951.
13. Campana, S.E. (1999) Chemistry and composition of fish otoliths: pathways, mechanisms and applications. Mar. Ecol. Prog. Ser. 188:263-297.
14. Caputi, N., Fletcher, W., Pearce, A. and Chubb, C. (1996) Effect of the Leeuwin Current on the recruitment of fish and invertebrates along the Western Australian coast. Mar. Freshw. Res. 47:147-155.
15. Christie, M.R., Johnson, D.W., Stallings, C.D. and Hixon, M.A. (2010) Self-recruitment and sweepstakes reproduction amid extensive gene flow in a coral-reef fish. Mol. Ecol. 19:1042-1057.
16. Chubb, C.F., Potter, I.C., Grant, C.J., Lenanton, R.C.J. and Wallace, J. (1981) Age structure, growth-rates and movements of sea mullet, Mugil cephalus L, and yellow-eye mullet, Aldrichetta forsteri (valenciennes), in the Swan-Avon river system, Western Australia. Aust. J. Mar. Freshw. Res. 32:605-628.
17. Condie, S.A. and Andrewartha, J.R. (2008) Circulation and connectivity on the Australian North West Shelf. Cont. Shelf Res. 28:1724-1739.
18. Condie, S.A., Waring, J., Mansbridge, J.V. and Cahill, M.L. (2005) Marine connectivity patterns around the Australian continent. Environ. Modell. Softw. 20:1149-1157.
19. Cowen, R.K. and Sponaugle, S. (2009) Larval dispersal and marine population connectivity. Ann. Rev. Mar. Sci. 1:443-466.
20. Epperson, B.K. (2005) Estimating dispersal from short distance spatial autocorrelation. Heredity 95:7-15.
21. Evanno, G., Regnaut, S. and Goudet, J. (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14:2611-2620.
22. Fairclough, D., Lai, E. and Bruce, C. (2010) West Coast Demersal Scalefish Fishery status report. In: State of the Fisheries and Aquatic Resources Report 2009/10. W.J. Fletcher&K. Santoro (eds) Perth: Department of Fisheries, pp. 80-90. URL http:// www.fish.wa.gov.au/docs/sof/2009/index.php?0402 [accessed 20 August 2010].
23. Feng, M., Waite, A. and Thompson, P.A. (2009) Climate variability and ocean production in the Leeuwin Current system off the west coast of Western Australia. In: The Leeuwin Current 2007 Symposium. K. Meney & M. Brocx (eds) J. R. Soc. West. Aust. 92:67-81.
24. Feng, M., Slawinski, D., Beckley, L.E. and Keesing, J.K. (2010) Retention and dispersal of shelf waters influenced by interactions of ocean boundary current and coastal geography. Mar. Freshw. Res. 61:1259-1267.
25. Feng, M., Caputi, N., Penn, J. et al. (2011) Ocean circulation, Stokes drift, and connectivity of western rock lobster (Panulirus cygnus) population. Can. J. Fish. Aquat. Sci. 68:1182-1196.
26. Gaughan, D.J. (2007) Potential mechanisms of influence of the Leeuwin Current eddy system on teleost recruitment to the Western Australian continental shelf. Deep Sea Res. Part 2 Top. Stud. Oceanogr. 54:1129-1140.
27. Guo, S.W. and Thompson, E.A. (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361-372.
28. Hastings, A. and Botsford, L.W. (2006) Persistence of spatial populations depends on returning home. Proc. Nat. Acad. Sci. U.S.A. 103:6067-6072.
29. Hesp, S.A., Potter, I.C. and Hall, N.G. (2002) Age and size composition, growth rate, reproductive biology, and habitats of the West Australian dhufish (Glaucosoma hebraicum) and their relevance to the management of this species. Fish. Bull. 100:214-227.
30. Hilborn, R. and Walters, C.J. (Eds) (1992) Quantitative Fisheries Stock Assessment: Choice, Dynamics and Uncertainty. Norwell, MA: Kluwer Academic Publishers.
31. Hill, M.F., Hastings, A. and Botsford, L.W. (2002) The effects of small dispersal rates on extinction times in structured metapopulation models. Am. Nat. 160:389-402.
32. Hutchins, J.B. and Pearce, A.F. (1994) Influence of the Leeuwin Current on recruitment of tropical reef fishes at Rottnest Island, Western Australia. Bull. Mar. Sci. 54:245-255.
33. Hutchins, B. and Swainston, R. (1996) Sea Fishes of Southern Australia. Willetton, WA: Swainston Publishing.
34. Marked genetic structuring in localised spawning populations of cod Gadus morhua in the North Sea and adjoining waters, as revealed by microsatellites
35. Ivanova, N.V., Dewaard, J.R. and Hebert, P.D.N. (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol. Ecol. Notes 6:998-1002.
36. James, M.K., Armsworth, P.R., Mason, L.B. and Bode, L. (2002) The structure of reef fish metapopulations: modelling larval dispersal and retention patterns. Proc. R. Soc. Lond. B 269:2079-2086.
37. Keesing, J.K., Heine, J.N., Babcock, R.C., Craig, P.D. and Koslow, J.A. (2006) Strategic Research Fund for the Marine Environment Final Report Volume 2, The SRFME core projects. Report. 266 pp. URL http://www.srfme.org.au/reports.htm [accessed 20 August 2010].
38. Kenchington, R. (1990) Managing Marine Environments. New York: Taylor and Frances.
39. Leis, J.M. (2003) What does larval fish biology tell us about the design and efficacy of marine protected areas?. In: Aquatic Protected Areas: What Works Best and What do We Know? Proceedings of the World Congress on Aquatic Protected Areas. J.P. Beumer, A. Grant & D.C. Smith (eds) Cairns, QLD: Australian Society for Fish Biology, pp. 170-180.
40. Leis, J.M. (2006) Are larvae of demersal fishes plankton or nekton? In: Advances in Marine Biology, vol. 51. London: Academic Press Ltd, pp. 57-141.
41. Leis, J.M. (2007) Behaviour as input for modelling dispersal of fish larvae: behaviour, biogeography, hydrodynamics, ontogeny, physiology and phylogeny meet hydrography. Mar. Ecol. Prog. Ser. 347:185-193.
42. Leis, J. (2010) Ontogeny of behaviour in larvae of marine demersal fishes. Ichthyol. Res. 57:325-342.
43. Lenanton, R. (1978) Age, spawning time and fecundity of Australian herring (Arripis georgianus C & V.) (Pisces: Arripidae) from the waters around Rottnest Island, Western Australia. Aust. J. Mar. Freshw. Res. 29:599-612.
44. Lenanton, R., Ayvazian, S., Pearce, A., Steckis, R. and Young, G. (1996) Tailor (Pomatomus saltatrix) off Western Australia: where does it spawn and how are the larvae distributed? Mar. Freshw. Res. 47:337-346.
45. Lenanton, R., StJohn, J., Keay, I. et al. (2009a) Spatial Scales of Exploitation Among Populations of Demersal Scalefish: Implications for Management. Part 2: Stock Structure and Biology of Two Indicator Species, West Australian Dhufish (Glaucosoma hebraicum) and Pink Snapper (Pagrus auratus), in the West Coast Bioregion. Report. North Beach, WA: Department of Fisheries. URL http://www.fish.wa.gov.au/docs/frr/frr174/ frr174.pdf [accessed 20 August 2010].
46. Lenanton, R., Caputi, N., Kangas, M. and Craine, M. (2009b) The ongoing influence of the Leeuwin Current on economically important fish and invertebrates off Temperate Western Australia -has it changed? In: The Leeuwin Current 2007 Symposium. K. Meney & M. Brocx (eds) J. R. Soc. West. Aust. 92, 111-127.
47. Lowe, W.H. and Allendorf, F.W. (2010) What can genetics tell us about population connectivity? Mol. Ecol. 19:3038-3051.
48. MacDonald, C.M. (1980) Population Structure, Biochemical Adaptation and Systematics in Temperate Marine Fishes of the Genera Arripis and Chrysophrys (Pisces: Perciformes). Ph.D. Thesis, Australian National University.
49. Mantel, N. (1967) Detection of disease clustering and a generalized regression approach. Cancer Res. 27:209.
50. Nahas, E.L., Jackson, G., Pattiaratchi, C.B. and Ivey, G.N. (2003) Hydrodynamic modelling of snapper Pagrus auratus egg and larval dispersal in Shark Bay, Western Australia: reproductive isolation at a fine spatial scale. Mar. Ecol. Prog. Ser. 265:213-226.
51. Nei, M. (1987) Molecular Evolutionary Genetics. New York: Columbia University Press, 512 pp.
52. Newman, S.J., Buckworth, R.C., Mackie, M.C. et al. (2009) Spatial subdivision among assemblages of Spanish mackerel, Scomberomorus commerson (Pisces: Scombridae) across northern Australia: implications for fisheries management. Glob. Ecol. Biogeogr. 18:711-723.
53. van Oosterhout, C., Weetman, D. and Hutchinson, W.F. (2006) Estimation and adjustment of microsatellite null alleles in nonequilibrium populations. Mol. Ecol. Notes 6:255-256.
54. Palsbøll, P.J., Berube, M. and Allendorf, F.W. (2007) Identification of management units using population genetic data. Trends Ecol. Evol. 22:11-16.
55. Parada, C., Mullon, C., Roy, C., Fréon, P., Hutchings, L. and van der Lingen, C. (2008) Does vertical migratory behaviour retain fish larvae onshore in upwelling ecosystems? A modelling study of anchovy in the southern Benguela Afr. J. Mar. Sci. 30:437-452.
56. Paris, C.B., Cherubin, L.M. and Cowen, R.K. (2007) Surfing, spinning, or diving from reef to reef: effects on population connectivity. Mar. Ecol. Prog. Ser. 347:285-300.
57. Peakall, R. and Smouse, P.E. (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6:288-295.
58. Pearce, A.F. and Hutchins, J.B. (2009) Oceanic processes and the recruitment of tropical fish at Rottnest Island (Western Australia). J. R. Soc. West. Aust. 92:177-193.
59. Pearce, A. and Pattiaratchi, C. (1999) The Capes Current: a summer countercurrent flowing past Cape Leeuwin and Cape Naturaliste, Western Australia. Cont. Shelf Res. 19:401-420.
60. Peucker, A.J., Dann, P. and Burridge, C.P. (2009) Range-wide phylogeography of the little penguin (Eudyptula minor): evidence of long-distance dispersal. Auk 126:397-408.
61. Pineda, J., Hare, J.A. and Sponaugle, S. (2007) Larval transport and dispersal in the coastal ocean and consequences for population connectivity. Oceanography 20:22-39.
62. Pironet, F.N. and Neira, F.J. (1998) Hormone-induced spawning and development of artificially reared larvae of the West Australian dhufish, Glaucosoma hebraicum (Glaucosomatidae). Mar. Freshw. Res. 49:133-142.
63. Potter, I.C., Cheal, A.J. and Loneragan, N.R. (1988) Protracted estuarine phase in the life-cycle of the marine pufferfish Torquigener pleurogramma. Mar. Biol. 98:317-329.
64. Pritchard, J.K., Stephens, M. and Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959.
65. Rousset, F. (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Resour. 8:103-106.
66. Schiller, A., Oke, P.R., Brassington, G. et al. (2008) Eddyresolving ocean circulation in the Asian-Australian region inferred from an ocean reanalysis effort. Prog. Oceanogr. 76:334-365.
67. Selkoe, K.A., Gaines, S.D., Caselle, J.E. and Warner, R.R. (2006) Current shifts and kin aggregation explain genetic patchiness in fish recruits. Ecology 87:3082-3094.
68. Selkoe, K.A., Henzler, C.M. and Gaines, S.D. (2008) Seascape genetics and the spatial ecology of marine populations. Fish Fish. 9:363-377.
69. Shand, J., Archer, M.A., Thomas, N. and Cleary, J. (2001) Retinal development of West Australian Dhufish, Glaucosoma hebraicum. Vis. Neurosci. 18:711-724.
70. Shinzig, M. (1992) Genetic Structure of Marine and Estuarine Populations of the Blowfish Torquigener pleurogramma in South-Western Australia. Honours Thesis, The University of Western Australia.
71. Smith, R.L., Huyer, A., Godfrey, J.S. and Church, J.A. (1991) The Leeuwin Current off Western Australia, 1986-1987. J. Phys. Oceanogr. 21:323-345.
72. Sokal, R.R. and Wartenberg, D.E. (1983) A test of spatial autocorrelation analysis using an isolation-by-distance model. Genetics 105:219-237.
73. StJohn, J., Fisher, S., Keay, I., Lenanton, R., C., W. and D. Gaughan, D. (2009a) Level of intermixing among populations. In: Spatial Scales of Exploitation Among Populations of Demersal Scalefish: Implications for Management. Part 2: Stock Structure and Biology of two Indicator Species, West Australian Dhufish (Glaucosoma hebraicum) and Pink Snapper (Pagrus auratus), in the West Coast Bioregion Final FRDC Report-Project 2003/052. Final report to Fisheries Research and Development Corporation on project 2003/052. Fisheries Research Report No. 174. R. Lenanton, J. StJohn, I. Keay, C. Wakefield, G. Jackson, B. Wise & D. Gaughan (eds) Perth: Department of Fisheries, pp. 14-24.
74. StJohn, J., Keay, I. and Wright, I. (2009b) Effects of onboard handling techniques and methods of release on recapture rates of temperate demersal species in Western Australia. In: Maximising Survival of Released Undersize West Coast Reef Fish. Final report to Fisheries Research and Development Corporation on project 2000/194. Fisheries Research Report No. 191. R. Lenanton, B. Wise, J. StJohn, I. Keay&D. Gaughan (eds) Perth: Department of Fisheries Western Australia, pp. 36-77.
75. Ward, R.D. (2006) The importance of identifying spatial population structure in restocking and stock enhancement programmes. Fish. Res. 80:9-18.
76. Waters, J.M., O'Loughlin, P.M. and Roy, M.S. (2004) Cladogenesis in a starfish species complex from southern Australia: evidence for vicariant speciation? Mol. Phylogenet. Evol. 32:236-245.
77. Watts, R.J. and Johnson, M.S. (2004) Estuaries, lagoons and enclosed embayments: habitats that enhance population subdivision of inshore fishes. Mar. Freshw. Res. 55:641-651.
78. Weir, B.S. and Cockerham, C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
79. Whitlock, M.C. and McCauley, D.E. (1999) Indirect measures of gene flow and migration: FST "1/(4Nm+1). Heredity 82:117-125.
80. Wise, B.S., StJohn, J. and Lenanton, R. (2007) Spatial Scales of Exploitation Among Populations of Demersal Scalefish: Implications for Management. Part 1: Stock Status of the Key Indicator Species for the Demersal Scalefish Fishery in the West Coast Bioregion. Final report to Fisheries Research and Development Corporation on Project No. 2003/052. Fisheries Research Report No. 163. Report. Perth, WA: Department of Fisheries, 130 pp. URL http://www.fish.wa.gov.au/docs/frr/ frr163 [accessed 20 August 2010].