Arthrobacter cupressi sp. nov., an actinomycete isolated from the rhizosphere soil of Cupressus sempervirens

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 11, 2012, Pages 2731-2736

  Zhang, Jian ^a   Ma, Yuchao ^a,b   Yu, Huimin ^a  

^a TSINGHUA UNIVERSITY   (China)

^b BEIJING FORESTRY UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID;

AEROBIC CELL CULTURE; ARTHROBACTER; ARTHROBACTER CUPRESSI; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CHINA; CUPRESSUS; CUPRESSUS SEMPERVIRENS; DNA DNA HYBRIDIZATION; GENE SEQUENCE; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; RHIZOSPHERE; SOIL;

ARTHROBACTER; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; CUPRESSUS; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHYLOGENY; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

ACTINOBACTERIA; ARTHROBACTER; CUPRESSUS; CUPRESSUS SEMPERVIRENS;

EID: 84868330206     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.036889-0     Document Type: Article

References (31)

1. Atlas, R. M. (1993). Handbook of Microbiological Media. Edited by L. C. Parks. Boca Raton, FL: CRC Press.
2. Barrow, G. I. & Feltham, R. K. A. (editors) (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
3. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
4. Collins, M. D. (1985). Analysis of isoprenoid quinones. Methods Microbiol 18, 329-366.
5. Conn, H. J. & Dimmick, I. (1947). Soil bacteria similar in morphology to Mycobacterium and Corynebacterium. J Bacteriol 54, 291-303.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Ding, L., Hirose, T. & Yokota, A. (2009). Four novel Arthrobacter species isolated from filtration substrate. Int J Syst Evol Microbiol 59, 856-862.
8. Embley, T. M. & Wait, R. (1994). Structural lipids of eubacteria. In Chemical Methods in Prokaryotic Systematics, pp. 121-161. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
9. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
10. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
11. Jones, D. & Keddie, R. M. (1992). The genus Arthrobacter. In The Prokaryotes: a Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd edn, vol. 2, pp. 1283-1299. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
12. Kageyama, A., Morisaki, K., Ōmura, S. & Takahashi, Y. (2008). Arthrobacter oryzae sp. nov. and Arthrobacter humicola sp. nov. Int J Syst Evol Microbiol 58, 53-56.
13. Keddie, R. M., Collins, M. D. & Jones, D. (1986). Genus Arthrobacter Conn and Dimmick 1947, 300AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1288-1301. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
14. Kim, K. K., Lee, K. C., Oh, H. M., Kim, M. J., Eom, M. K. & Lee, J. S. (2008). Arthrobacter defluvii sp. nov., 4-chlorophenol-degrading bacteria isolated from sewage. Int J Syst Evol Microbiol 58, 1916-1921.
15. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
16. Lee, S., Rhee, H., Tae, W., Shin, J. & Park, B. (1989). Purification and characterization of cholesterol oxidase from Pseudomonas sp. and taxonomic study of the strain. Appl Microbiol Biotechnol 31, 542-546.
17. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
18. Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin layer chromatographic analysis of whole-cell methanolysates. J Gen Microbiol 88, 200-204.
19. Minnikin, D., O'Donnell, A., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
22. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
23. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
24. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Manual of Methods for General and Microbiology Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
25. Stackebrandt, E., Fowler, V. J., Fiedler, F. & Seiler, H. (1983). Taxonomic studies on Arthrobacter nicotianae and related taxa: description of Arthrobacter uratoxydans sp. nov. and Arthrobacter sulfureus sp. nov. and reclassification of Brevibacterium protophormiae as Arthrobacter protophormiae comb. nov. Syst Appl Microbiol 4, 470-486.
26. Takahashi, Y., Katoh, S., Shikura, N., Tomoda, H. & Ōmura, S. (2003). Superoxide dismutase produced by soil bacteria increases bacterial colony growth from soil samples. J Gen Appl Microbiol 49, 263-266.
27. Tamura, K. & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10, 512-526.
28. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
29. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
30. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
31. Yanagi, M. & Yamasato, K. (1993). Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett 107, 115-120.