메뉴 건너뛰기




Volumn 78, Issue 19, 2012, Pages 6946-6953

Intercity spread of echovirus 6 in shandong province, china: Application of environmental surveillance in tracing circulating enteroviruses

Author keywords

[No Author keywords available]

Indexed keywords

CODING REGION; ENVIRONMENTAL ISOLATES; ENVIRONMENTAL SURVEILLANCE; GENE DIVERSITY; MAXIMUM LIKELIHOOD METHODS; MOST RECENT COMMON ANCESTORS; PHYLOGENETIC ANALYSIS; SENSITIVE METHOD; SEROTYPES; SHANDONG PROVINCE;

EID: 84868312923     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01861-12     Document Type: Article
Times cited : (30)

References (29)
  • 2
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • doi: 10.1186/1471-2148-7-214
    • Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214. doi:10.1186/1471-2148-7-214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 3
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 4
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 5
    • 0034852115 scopus 로고    scopus 로고
    • Poliovirus surveillance by examining sewage specimens. Quantitative recovery of virus after introduction into sewerage at remote upstream location
    • Hovi T, Stenvik M, Partanen H, Kangas A. 2001. Poliovirus surveillance by examining sewage specimens. Quantitative recovery of virus after introduction into sewerage at remote upstream location. Epidemiol. Infect. 127:101-106.
    • (2001) Epidemiol. Infect. , vol.127 , pp. 101-106
    • Hovi, T.1    Stenvik, M.2    Partanen, H.3    Kangas, A.4
  • 6
    • 82455199169 scopus 로고    scopus 로고
    • Role of environmental poliovirus surveillance in global polio eradication and beyond
    • Hovi T, et al. 2012. Role of environmental poliovirus surveillance in global polio eradication and beyond. Epidemiol. Infect. 140:1-13.
    • (2012) Epidemiol. Infect. , vol.140 , pp. 1-13
    • Hovi, T.1
  • 7
    • 33748773591 scopus 로고    scopus 로고
    • Molecular epidemiology of echoviruses 11 and 13, based on an environmental surveillance conducted in Toyama Prefecture, 2002-2003
    • Iwai M, et al. 2006. Molecular epidemiology of echoviruses 11 and 13, based on an environmental surveillance conducted in Toyama Prefecture, 2002-2003. Appl. Environ. Microbiol. 72:6381-6387.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6381-6387
    • Iwai, M.1
  • 8
    • 42449139751 scopus 로고    scopus 로고
    • Calibration of multiple poliovirus molecular clocks covering an extended evolutionary range
    • Jorba J, Campagnoli R, De L, Kew O. 2008. Calibration of multiple poliovirus molecular clocks covering an extended evolutionary range. J. Virol. 82:4429-4440.
    • (2008) J. Virol. , vol.82 , pp. 4429-4440
    • Jorba, J.1    Campagnoli, R.2    De, L.3    Kew, O.4
  • 9
    • 70350343142 scopus 로고    scopus 로고
    • Environmental surveillance of non-polio enteroviruses in Iran
    • doi: 10.1186/1743-422X-6-149
    • Kargar M, Sadeghipour S, Nategh R. 2009. Environmental surveillance of non-polio enteroviruses in Iran. Virol. J. 6:149. doi:10.1186/1743-422X-6-149.
    • (2009) Virol. J. , vol.6 , pp. 149
    • Kargar, M.1    Sadeghipour, S.2    Nategh, R.3
  • 10
    • 78049504128 scopus 로고    scopus 로고
    • High degree of genetic diversity of non-polio enteroviruses identified in Georgia by environmental and clinical surveillance, 2002-2005
    • Khetsuriani N, et al. 2010. High degree of genetic diversity of non-polio enteroviruses identified in Georgia by environmental and clinical surveillance, 2002-2005. J. Med. Microbiol. 59:1340-1347.
    • (2010) J. Med. Microbiol. , vol.59 , pp. 1340-1347
    • Khetsuriani, N.1
  • 11
    • 84858002398 scopus 로고    scopus 로고
    • Picornaviridae
    • King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, CA
    • Knowles NJ, et al. 2011. Picornaviridae, p 855-880. In King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy. Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, CA.
    • (2011) Virus taxonomy , pp. 855-880
    • Knowles, N.J.1
  • 12
    • 79960700061 scopus 로고    scopus 로고
    • Complete nucleotide sequence analysis of the VP1 genomic region of Echoviruses 6 isolated from sewage in Greece revealed 98% similarity with Echoviruses 6 that were characterized from an aseptic meningitis outbreak 1 year later
    • Kyriakopoulou Z, et al. 2011. Complete nucleotide sequence analysis of the VP1 genomic region of Echoviruses 6 isolated from sewage in Greece revealed 98% similarity with Echoviruses 6 that were characterized from an aseptic meningitis outbreak 1 year later. Clin. Microbiol. Infect. 17: 1170-1173.
    • (2011) Clin. Microbiol. Infect. , vol.17 , pp. 1170-1173
    • Kyriakopoulou, Z.1
  • 13
    • 85081767342 scopus 로고    scopus 로고
    • Surveillance and analysis on etiology of acute meningitis/ encephalitis syndrome in Jinan city of Shandong Province in 2010
    • Lin X, et al. 2012. Surveillance and analysis on etiology of acute meningitis/ encephalitis syndrome in Jinan city of Shandong Province in 2010. Zhongguo Yi Miao He Mian Yi 18:127-130.
    • (2012) Zhongguo Yi Miao He Mian Yi , vol.18 , pp. 127-130
    • Lin, X.1
  • 14
    • 84864092050 scopus 로고    scopus 로고
    • Feasibility of quantitative environmental surveillance in poliovirus eradication strategies
    • Lodder WJ, et al. 2012. Feasibility of quantitative environmental surveillance in poliovirus eradication strategies. Appl. Environ. Microbiol. 78: 3800-3805.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 3800-3805
    • Lodder, W.J.1
  • 15
    • 0033020133 scopus 로고    scopus 로고
    • Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification
    • Oberste MS, Maher K, Kilpatrick DR, Pallansch MA. 1999. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J. Virol. 73:1941-1948.
    • (1999) J. Virol. , vol.73 , pp. 1941-1948
    • Oberste, M.S.1    Maher, K.2    Kilpatrick, D.R.3    Pallansch, M.A.4
  • 16
    • 0034007206 scopus 로고    scopus 로고
    • Comparison of classic and molecular approaches for the identification of untypeable enteroviruses
    • Oberste MS, et al. 2000. Comparison of classic and molecular approaches for the identification of untypeable enteroviruses. J. Clin. Microbiol. 38: 1170-1174.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1170-1174
    • Oberste, M.S.1
  • 17
    • 34447577520 scopus 로고    scopus 로고
    • Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses
    • Knipe DM, et al (ed), 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA
    • Pallansch M, Roos R. 2007. Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses, p 839-893. In Knipe DM, et al (ed), Fields virology, 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA.
    • (2007) Fields virology , pp. 839-893
    • Pallansch, M.1    Roos, R.2
  • 18
    • 77953259894 scopus 로고    scopus 로고
    • Highly divergent neurovirulent vaccine-derived polioviruses of all three serotypes are recurrently detected in Finnish sewage
    • Roivainen M, et al. 2010. Highly divergent neurovirulent vaccine-derived polioviruses of all three serotypes are recurrently detected in Finnish sewage. Euro Surveill. 15:pii19566. http://www.eurosurveillance.org/ViewArticle.aspx ?ArticleId_19566.
    • (2010) Euro Surveill , vol.15
    • Roivainen, M.1
  • 19
    • 79960339347 scopus 로고    scopus 로고
    • A large Finnish echovirus 30 outbreak was preceded by silent circulation of the same genotype
    • Savolainen-Kopra C, et al. 2011. A large Finnish echovirus 30 outbreak was preceded by silent circulation of the same genotype. Virus Genes 42:28-36.
    • (2011) Virus Genes , vol.42 , pp. 28-36
    • Savolainen-Kopra, C.1
  • 20
    • 0019531958 scopus 로고
    • Seasonal occurrence of viruses in the Milwaukee area
    • Sedmak G, Abel C, Voight B, Wisniewski H. 1981. Seasonal occurrence of viruses in the Milwaukee area. Wis. Med. J. 80:31-35.
    • (1981) Wis. Med. J. , vol.80 , pp. 31-35
    • Sedmak, G.1    Abel, C.2    Voight, B.3    Wisniewski, H.4
  • 21
    • 2142855639 scopus 로고    scopus 로고
    • Assessment of an enterovirus sewage surveillance system by comparison of clinical isolates with sewage isolates from Milwaukee, Wisconsin, collected August 1994 to December 2002
    • Sedmak G, Bina D, MacDonald J. 2003. Assessment of an enterovirus sewage surveillance system by comparison of clinical isolates with sewage isolates from Milwaukee, Wisconsin, collected August 1994 to December 2002. Appl. Environ. Microbiol. 69:7181-7187.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7181-7187
    • Sedmak, G.1    Bina, D.2    MacDonald, J.3
  • 22
    • 33847630916 scopus 로고    scopus 로고
    • Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
    • doi: 10.1186/1471-2105-8-63
    • Shih AC, Lee DT, Peng CL, Wu YW. 2007. Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences. BMC Bioinformatics 8:63. doi:10.1186/1471-2105-8-63.
    • (2007) BMC Bioinformatics , vol.8 , pp. 63
    • Shih, A.C.1    Lee, D.T.2    Peng, C.L.3    Wu, Y.W.4
  • 23
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 24
    • 77952238099 scopus 로고    scopus 로고
    • Isolation of a recombinant type 3/type 2 poliovirus with a chimeric capsid VP1 from sewage in Shandong
    • Tao Z, et al. 2010. Isolation of a recombinant type 3/type 2 poliovirus with a chimeric capsid VP1 from sewage in Shandong, China. Virus Res. 150: 56-60.
    • (2010) China. Virus Res. , vol.150 , pp. 56-60
    • Tao, Z.1
  • 25
    • 79958294288 scopus 로고    scopus 로고
    • Cocirculation of two transmission lineages of echovirus 6 in Jinan, China, as revealed by environmental surveillance and sequence analysis
    • Tao Z, et al. 2011. Cocirculation of two transmission lineages of echovirus 6 in Jinan, China, as revealed by environmental surveillance and sequence analysis. Appl. Environ. Microbiol. 77:3786-3792.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 3786-3792
    • Tao, Z.1
  • 27
    • 84863718075 scopus 로고    scopus 로고
    • Evaluating the prevalence and molecular epidemiology of echovirus 11 isolated from sewage in Shandong Province, China in 2010
    • Yang J, et al. 2012. Evaluating the prevalence and molecular epidemiology of echovirus 11 isolated from sewage in Shandong Province, China in 2010. Virus Genes 44:388-394.
    • (2012) Virus Genes , vol.44 , pp. 388-394
    • Yang, J.1
  • 28
    • 0034727451 scopus 로고    scopus 로고
    • Characterisation of vaccine-derived polioviruses isolated from sewage and river water in Japan
    • Yoshida H, Horie H, Matsuura K, Miyamura T. 2000. Characterisation of vaccine-derived polioviruses isolated from sewage and river water in Japan. Lancet 356:1461-1463.
    • (2000) Lancet , vol.356 , pp. 1461-1463
    • Yoshida, H.1    Horie, H.2    Matsuura, K.3    Miyamura, T.4
  • 29
    • 0036246657 scopus 로고    scopus 로고
    • Prevalence of vaccine-derived polioviruses in the environment
    • Yoshida H, et al. 2002. Prevalence of vaccine-derived polioviruses in the environment. J. Gen. Virol. 83:1107-1111.
    • (2002) J. Gen. Virol. , vol.83 , pp. 1107-1111
    • Yoshida, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.